File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/c17f89a147cb5caee55c1b32d99598/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:51:01
                             Started mapping on |	Jun 08 08:57:42
                                    Finished on |	Jun 08 09:10:29
       Mapping speed, Million of reads per hour |	214.01

                          Number of input reads |	45595088
                      Average input read length |	231
                                    UNIQUE READS:
                   Uniquely mapped reads number |	43390285
                        Uniquely mapped reads % |	95.16%
                          Average mapped length |	228.74
                       Number of splices: Total |	41630982
            Number of splices: Annotated (sjdb) |	40918292
                       Number of splices: GT/AG |	41037708
                       Number of splices: GC/AG |	312474
                       Number of splices: AT/AC |	28540
               Number of splices: Non-canonical |	252260
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.52
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1449522
             % of reads mapped to multiple loci |	3.18%
        Number of reads mapped to too many loci |	61457
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	640164
                 % of reads unmapped: too short |	1.40%
                Number of reads unmapped: other |	53660
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%