File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/e155020a22ab151dcd6b1381f0cb48/.command.out
Size
1.2 KB
Attempt
  AIH curated blacklist: matched 2 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 17
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 17 (100.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 2
  All 2 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high): 1
  confidence_below_min(medium<high);aih_curated_blacklist: 1
  confidence_below_min(low<high);aih_curated_blacklist: 1

Breakdown by confidence:
  low: 0 pass, 12 fail (total: 12)
  medium: 0 pass, 5 fail (total: 5)
Arriba filter: 17 rows -> 0 PASS; wrote tih_rna_sample_00584_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00584_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00584_B23MVV7LT4_1.arriba.fusions.filter_summary.txt