Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/7d689d02309ab4996dad6f89d912a0/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e00864f6fc0c0bac74836b63c0d691/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e00864f6fc0c0bac74836b63c0d691/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/14a19fb5f4ba677d8c6d6065a18b8f/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 239568152
[W::hts_idx_load3] The index file is older than the data file: FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	239568152
Known Splicing Events:	235862589
Partial Novel Splicing Events:	1552655
Novel Splicing Events:	2084551
Filtered Splicing Events:	68357

Total splicing  Junctions:	465812
Known Splicing Junctions:	244925
Partial Novel Splicing Junctions:	152573
Novel Splicing Junctions:	68314

===================================================================
Create BED file ...
Create Interact file ...