Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/2c3cbe12ba5d4e8499f2e5889e6ae2/tih_rna_sample_00569_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/4464d0e383fd3a2da0d3afaa27fe45/tih_rna_sample_00569_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/1d41559e2a4365b55d42a6eb472d99/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/1d41559e2a4365b55d42a6eb472d99/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AFAP1--SMARCA2
starfusion
arriba
NOTCH2--SPAG17
starfusion
arriba
TWSG1--PTPRM
starfusion
arriba
EXOC4--CHCHD3
starfusion
arriba
ROR2--RABL3
starfusion
arriba
WWTR1--KRT6A
starfusion
SLC2A9--WDR1
starfusion
MRPL39--SLC4A4
starfusion
arriba
MED12L--PRKCA
starfusion
EXOC4--FP236383.3
starfusion
AC090735.1--PRKCA
starfusion
TLK2P1--AC110079.1
starfusion
GUCY1B2--NKAIN2
starfusion
AC104041.1--APBA1
starfusion
AC020550.2--APBA1
starfusion
TLK2--AC240565.1
starfusion
OR10Z1--CAPZB
starfusion
LINC00381--NKAIN2
starfusion
AC023866.2--ALB
starfusion
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
TVP23C--CDRT4
arriba
PCDHA9--PCDHAC2
arriba
PCDHA9--PCDHAC1
arriba
PCDHA9--PCDHA13
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA11
arriba
ZNF488--VSTM4
arriba
ANXA8--VSTM4
arriba
AC092807.3--DDAH1
arriba
NXPE3--AC107297.1
arriba
NXPE3--AC078828.1
arriba
PLXNA4--CNTNAP2
arriba
MTRF1LP2--GSDMC
arriba
GSDMC--GSDMC
arriba

  0%|          | 0/44 [00:00<?, ?it/s]
Processing AFAP1--SMARCA2:   0%|          | 0/44 [00:00<?, ?it/s]
Processing AFAP1--SMARCA2:   2%|▏         | 1/44 [00:00<00:04,  9.21it/s]
Processing NOTCH2--SPAG17:   2%|▏         | 1/44 [00:00<00:04,  9.21it/s]
Processing NOTCH2--SPAG17:   5%|▍         | 2/44 [00:00<00:04,  9.46it/s]
Processing TWSG1--PTPRM:   5%|▍         | 2/44 [00:00<00:04,  9.46it/s]  
Processing TWSG1--PTPRM:   7%|▋         | 3/44 [00:00<00:04,  9.54it/s]
Processing EXOC4--CHCHD3:   7%|▋         | 3/44 [00:00<00:04,  9.54it/s]
Processing EXOC4--CHCHD3:   9%|▉         | 4/44 [00:00<00:04,  9.58it/s]
Processing ROR2--RABL3:   9%|▉         | 4/44 [00:00<00:04,  9.58it/s]  
Processing ROR2--RABL3:  11%|█▏        | 5/44 [00:00<00:04,  9.60it/s]
Processing WWTR1--KRT6A:  11%|█▏        | 5/44 [00:00<00:04,  9.60it/s]
Processing WWTR1--KRT6A:  14%|█▎        | 6/44 [00:00<00:03,  9.61it/s]
Processing SLC2A9--WDR1:  14%|█▎        | 6/44 [00:00<00:03,  9.61it/s]
Processing SLC2A9--WDR1:  16%|█▌        | 7/44 [00:00<00:03,  9.62it/s]
Processing MRPL39--SLC4A4:  16%|█▌        | 7/44 [00:00<00:03,  9.62it/s]
Processing MRPL39--SLC4A4:  18%|█▊        | 8/44 [00:00<00:03,  9.63it/s]
Processing MED12L--PRKCA:  18%|█▊        | 8/44 [00:00<00:03,  9.63it/s] 
Processing MED12L--PRKCA:  20%|██        | 9/44 [00:00<00:03,  9.63it/s]
Processing EXOC4--FP236383.3:  20%|██        | 9/44 [00:00<00:03,  9.63it/s]
Processing EXOC4--FP236383.3:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing AC090735.1--PRKCA:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing AC090735.1--PRKCA:  25%|██▌       | 11/44 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 11/44 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 12/44 [00:01<00:03,  9.64it/s]
Processing GUCY1B2--NKAIN2:  27%|██▋       | 12/44 [00:01<00:03,  9.64it/s]   
Processing GUCY1B2--NKAIN2:  30%|██▉       | 13/44 [00:01<00:03,  9.64it/s]
Processing AC104041.1--APBA1:  30%|██▉       | 13/44 [00:01<00:03,  9.64it/s]
Processing AC104041.1--APBA1:  32%|███▏      | 14/44 [00:01<00:03,  9.64it/s]
Processing AC020550.2--APBA1:  32%|███▏      | 14/44 [00:01<00:03,  9.64it/s]
Processing AC020550.2--APBA1:  34%|███▍      | 15/44 [00:01<00:03,  9.64it/s]
Processing TLK2--AC240565.1:  34%|███▍      | 15/44 [00:01<00:03,  9.64it/s] 
Processing TLK2--AC240565.1:  36%|███▋      | 16/44 [00:01<00:02,  9.64it/s]
Processing OR10Z1--CAPZB:  36%|███▋      | 16/44 [00:01<00:02,  9.64it/s]   
Processing OR10Z1--CAPZB:  39%|███▊      | 17/44 [00:01<00:02,  9.64it/s]
Processing LINC00381--NKAIN2:  39%|███▊      | 17/44 [00:01<00:02,  9.64it/s]
Processing LINC00381--NKAIN2:  41%|████      | 18/44 [00:01<00:02,  9.64it/s]
Processing AC023866.2--ALB:  41%|████      | 18/44 [00:01<00:02,  9.64it/s]  
Processing AC023866.2--ALB:  43%|████▎     | 19/44 [00:01<00:02,  9.64it/s]
Processing PCDHA10--PCDHAC2:  43%|████▎     | 19/44 [00:01<00:02,  9.64it/s]
Processing PCDHA10--PCDHAC2:  45%|████▌     | 20/44 [00:02<00:02,  9.64it/s]
Processing PCDHA10--PCDHAC1:  45%|████▌     | 20/44 [00:02<00:02,  9.64it/s]
Processing PCDHA10--PCDHAC1:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHA10--PCDHA13:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHA10--PCDHA13:  50%|█████     | 22/44 [00:02<00:02,  9.64it/s]
Processing TVP23C--CDRT4:  50%|█████     | 22/44 [00:02<00:02,  9.64it/s]   
Processing TVP23C--CDRT4:  52%|█████▏    | 23/44 [00:02<00:02,  9.64it/s]
Processing PCDHA9--PCDHAC2:  52%|█████▏    | 23/44 [00:02<00:02,  9.64it/s]
Processing PCDHA9--PCDHAC2:  55%|█████▍    | 24/44 [00:02<00:02,  9.64it/s]
Processing PCDHA9--PCDHAC1:  55%|█████▍    | 24/44 [00:02<00:02,  9.64it/s]
Processing PCDHA9--PCDHAC1:  57%|█████▋    | 25/44 [00:02<00:01,  9.64it/s]
Processing PCDHA9--PCDHA13:  57%|█████▋    | 25/44 [00:02<00:01,  9.64it/s]
Processing PCDHA9--PCDHA13:  59%|█████▉    | 26/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA8:  59%|█████▉    | 26/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA8:  61%|██████▏   | 27/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGC5:  61%|██████▏   | 27/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGC5:  64%|██████▎   | 28/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGB6:  64%|██████▎   | 28/44 [00:02<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGB6:  66%|██████▌   | 29/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGC4:  66%|██████▌   | 29/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGC4:  68%|██████▊   | 30/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA10:  68%|██████▊   | 30/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA10:  70%|███████   | 31/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGB7:  70%|███████   | 31/44 [00:03<00:01,  9.64it/s] 
Processing PCDHGA6--PCDHGB7:  73%|███████▎  | 32/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA9:  73%|███████▎  | 32/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA9:  75%|███████▌  | 33/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA12:  75%|███████▌  | 33/44 [00:03<00:01,  9.64it/s]
Processing PCDHGA6--PCDHGA12:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing PCDHGA6--PCDHGC3:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s] 
Processing PCDHGA6--PCDHGC3:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]
Processing PCDHGA6--PCDHGA11:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]
Processing PCDHGA6--PCDHGA11:  82%|████████▏ | 36/44 [00:03<00:00,  9.64it/s]
Processing ZNF488--VSTM4:  82%|████████▏ | 36/44 [00:03<00:00,  9.64it/s]    
Processing ZNF488--VSTM4:  84%|████████▍ | 37/44 [00:03<00:00,  9.64it/s]
Processing ANXA8--VSTM4:  84%|████████▍ | 37/44 [00:03<00:00,  9.64it/s] 
Processing ANXA8--VSTM4:  86%|████████▋ | 38/44 [00:03<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  86%|████████▋ | 38/44 [00:03<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  89%|████████▊ | 39/44 [00:04<00:00,  9.64it/s]
Processing NXPE3--AC107297.1:  89%|████████▊ | 39/44 [00:04<00:00,  9.64it/s]
Processing NXPE3--AC107297.1:  91%|█████████ | 40/44 [00:04<00:00,  9.64it/s]
Processing NXPE3--AC078828.1:  91%|█████████ | 40/44 [00:04<00:00,  9.64it/s]
Processing NXPE3--AC078828.1:  93%|█████████▎| 41/44 [00:04<00:00,  9.64it/s]
Processing PLXNA4--CNTNAP2:  93%|█████████▎| 41/44 [00:04<00:00,  9.64it/s]  
Processing PLXNA4--CNTNAP2:  95%|█████████▌| 42/44 [00:04<00:00,  9.64it/s]
Processing MTRF1LP2--GSDMC:  95%|█████████▌| 42/44 [00:04<00:00,  9.64it/s]
Processing MTRF1LP2--GSDMC:  98%|█████████▊| 43/44 [00:04<00:00,  9.64it/s]
Processing GSDMC--GSDMC:  98%|█████████▊| 43/44 [00:04<00:00,  9.64it/s]   
Processing GSDMC--GSDMC: 100%|██████████| 44/44 [00:04<00:00,  9.64it/s]
Processing GSDMC--GSDMC: 100%|██████████| 44/44 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory