File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/acaf751dfa9b41e7dc3fcdb4e8fdb5/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:09:50
                             Started mapping on |	Jun 08 10:16:27
                                    Finished on |	Jun 08 11:39:08
       Mapping speed, Million of reads per hour |	214.74

                          Number of input reads |	295922654
                      Average input read length |	263
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284703845
                        Uniquely mapped reads % |	96.21%
                          Average mapped length |	262.67
                       Number of splices: Total |	327498271
            Number of splices: Annotated (sjdb) |	322804877
                       Number of splices: GT/AG |	324078689
                       Number of splices: GC/AG |	2076723
                       Number of splices: AT/AC |	220814
               Number of splices: Non-canonical |	1122045
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7579139
             % of reads mapped to multiple loci |	2.56%
        Number of reads mapped to too many loci |	568728
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2745034
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	325908
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%