Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/5034132953016fce324418fe21c9f6/fi_workdir/tih_rna_sample_00569_B23MVV7LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0b1f9f4eb329270af489f441506c98/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0b1f9f4eb329270af489f441506c98/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5635
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5635
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5635
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC020550.2--APBA1 HAVANA mRNA 5135 29201 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC020550.2--APBA1^ENST00000265381.7" ; Parent "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC020550.2--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020550.2--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC023866.2--ALB HAVANA gene 7467 22183 . + . FI_gene_label "ALB^ENSG00000163631.17" ; ID "AC023866.2--ALB^ALB^ENSG00000163631.17" ; ccdsid "CCDS3555.1" ; exon_id "ENSE00003469460.1" ; exon_number 1 ; gene_id "AC023866.2--ALB^ALB^ENSG00000163631.17" ; gene_name ALB ; gene_type protein_coding ; havana_gene "OTTHUMG00000129919.6" ; havana_transcript "OTTHUMT00000252173.4" ; hgnc_id "HGNC:399" ; level 2 ; orig_coord_info "chr4,73404328,73404406,+" ; protein_id "ENSP00000295897.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AC023866.2--ALB^ENST00000295897.9" ; transcript_name "ALB-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC023866.2--ALB HAVANA mRNA 7467 22183 . + . FI_gene_label "ALB^ENSG00000163631.17" ; ID "AC023866.2--ALB^ENST00000295897.9" ; Parent "AC023866.2--ALB^ALB^ENSG00000163631.17" ; ccdsid "CCDS3555.1" ; exon_id "ENSE00003469460.1" ; exon_number 1 ; gene_id "AC023866.2--ALB^ALB^ENSG00000163631.17" ; gene_name ALB ; gene_type protein_coding ; havana_gene "OTTHUMG00000129919.6" ; havana_transcript "OTTHUMT00000252173.4" ; hgnc_id "HGNC:399" ; level 2 ; orig_coord_info "chr4,73404328,73404406,+" ; protein_id "ENSP00000295897.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AC023866.2--ALB^ENST00000295897.9" ; transcript_name "ALB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC090735.1--PRKCA HAVANA gene 5839 26060 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC090735.1--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
AC090735.1--PRKCA HAVANA mRNA 5839 26060 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "AC090735.1--PRKCA^ENST00000284384.6" ; Parent "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC090735.1--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC104041.1--APBA1 HAVANA mRNA 27146 51212 . + . FI_gene_label "APBA1^ENSG00000107282.8" ; ID "AC104041.1--APBA1^ENST00000265381.7" ; Parent "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; ccdsid "CCDS6630.1" ; exon_id "ENSE00001089894.1" ; exon_number 2 ; gene_id "AC104041.1--APBA1^APBA1^ENSG00000107282.8" ; gene_name APBA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019984.5" ; havana_transcript "OTTHUMT00000052589.3" ; hgnc_id "HGNC:578" ; level 2 ; orig_coord_info "chr9,69516011,69517210,-" ; protein_id "ENSP00000265381.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC104041.1--APBA1^ENST00000265381.7" ; transcript_name "APBA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFAP1--SMARCA2 HAVANA gene 85271 96274 . + . FI_gene_label "SMARCA2^ENSG00000080503.24" ; ID "AFAP1--SMARCA2^SMARCA2^ENSG00000080503.24" ; ccdsid "CCDS75808.1" ; exon_id "ENSE00001401989.1" ; exon_number 1 ; gene_id "AFAP1--SMARCA2^SMARCA2^ENSG00000080503.24" ; gene_name SMARCA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019445.14" ; havana_transcript "OTTHUMT00000051503.3" ; hgnc_id "HGNC:11098" ; level 2 ; orig_coord_info "chr9,2158976,2158978,+" ; protein_id "ENSP00000305411.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "AFAP1--SMARCA2^ENST00000302401.8" ; transcript_name "SMARCA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
AFAP1--SMARCA2 HAVANA mRNA 85271 96274 . + . FI_gene_label "SMARCA2^ENSG00000080503.24" ; ID "AFAP1--SMARCA2^ENST00000302401.8" ; Parent "AFAP1--SMARCA2^SMARCA2^ENSG00000080503.24" ; ccdsid "CCDS75808.1" ; exon_id "ENSE00001401989.1" ; exon_number 1 ; gene_id "AFAP1--SMARCA2^SMARCA2^ENSG00000080503.24" ; gene_name SMARCA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019445.14" ; havana_transcript "OTTHUMT00000051503.3" ; hgnc_id "HGNC:11098" ; level 2 ; orig_coord_info "chr9,2158976,2158978,+" ; protein_id "ENSP00000305411.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "AFAP1--SMARCA2^ENST00000302401.8" ; transcript_name "SMARCA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AFAP1--SMARCA2 ENSEMBL gene 1001 31427 . + . FI_gene_label "AFAP1^ENSG00000196526.10" ; ID "AFAP1--SMARCA2^AFAP1^ENSG00000196526.10" ; ccdsid "CCDS3397.1" ; exon_id "ENSE00001425148.1" ; exon_number 2 ; gene_id "AFAP1--SMARCA2^AFAP1^ENSG00000196526.10" ; gene_name AFAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000125515.5" ; hgnc_id "HGNC:24017" ; level 3 ; orig_coord_info "chr4,7871952,7872078,-" ; protein_id "ENSP00000351245.2" ; tag basic appris_principal_1 CCDS ; transcript_id "AFAP1--SMARCA2^ENST00000358461.6" ; transcript_name "AFAP1-201" ; transcript_support_level 2 ; transcript_type protein_coding
AFAP1--SMARCA2 ENSEMBL mRNA 1001 31427 . + . FI_gene_label "AFAP1^ENSG00000196526.10" ; ID "AFAP1--SMARCA2^ENST00000358461.6" ; Parent "AFAP1--SMARCA2^AFAP1^ENSG00000196526.10" ; ccdsid "CCDS3397.1" ; exon_id "ENSE00001425148.1" ; exon_number 2 ; gene_id "AFAP1--SMARCA2^AFAP1^ENSG00000196526.10" ; gene_name AFAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000125515.5" ; hgnc_id "HGNC:24017" ; level 3 ; orig_coord_info "chr4,7871952,7872078,-" ; protein_id "ENSP00000351245.2" ; tag basic appris_principal_1 CCDS ; transcript_id "AFAP1--SMARCA2^ENST00000358461.6" ; transcript_name "AFAP1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANXA8--VSTM4 HAVANA gene 18489 22658 . + . FI_gene_label "VSTM4^ENSG00000165633.13" ; ID "ANXA8--VSTM4^VSTM4^ENSG00000165633.13" ; ccdsid "CCDS7228.1" ; exon_id "ENSE00001340783.3" ; exon_number 1 ; gene_id "ANXA8--VSTM4^VSTM4^ENSG00000165633.13" ; gene_name VSTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018184.4" ; havana_transcript "OTTHUMT00000047967.1" ; hgnc_id "HGNC:26470" ; level 2 ; orig_coord_info "chr10,49115431,49115485,-" ; protein_id "ENSP00000298454.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANXA8--VSTM4^ENST00000298454.3" ; transcript_name "VSTM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
ANXA8--VSTM4 HAVANA mRNA 18489 22658 . + . FI_gene_label "VSTM4^ENSG00000165633.13" ; ID "ANXA8--VSTM4^ENST00000298454.3" ; Parent "ANXA8--VSTM4^VSTM4^ENSG00000165633.13" ; ccdsid "CCDS7228.1" ; exon_id "ENSE00001340783.3" ; exon_number 1 ; gene_id "ANXA8--VSTM4^VSTM4^ENSG00000165633.13" ; gene_name VSTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018184.4" ; havana_transcript "OTTHUMT00000047967.1" ; hgnc_id "HGNC:26470" ; level 2 ; orig_coord_info "chr10,49115431,49115485,-" ; protein_id "ENSP00000298454.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANXA8--VSTM4^ENST00000298454.3" ; transcript_name "VSTM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANXA8--VSTM4 HAVANA gene 1143 11405 . + . FI_gene_label "ANXA8^ENSG00000265190.7" ; ID "ANXA8--VSTM4^ANXA8^ENSG00000265190.7" ; exon_id "ENSE00002729180.1" ; exon_number 1 ; gene_id "ANXA8--VSTM4^ANXA8^ENSG00000265190.7" ; gene_name ANXA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188209.3" ; havana_transcript "OTTHUMT00000476767.1" ; hgnc_id "HGNC:546" ; level 2 ; orig_coord_info "chr10,47483913,47483933,-" ; protein_id "ENSP00000463244.1" ; transcript_id "ANXA8--VSTM4^ENST00000577813.1" ; transcript_name "ANXA8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ANXA8--VSTM4 HAVANA mRNA 1143 11405 . + . FI_gene_label "ANXA8^ENSG00000265190.7" ; ID "ANXA8--VSTM4^ENST00000577813.1" ; Parent "ANXA8--VSTM4^ANXA8^ENSG00000265190.7" ; exon_id "ENSE00002729180.1" ; exon_number 1 ; gene_id "ANXA8--VSTM4^ANXA8^ENSG00000265190.7" ; gene_name ANXA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188209.3" ; havana_transcript "OTTHUMT00000476767.1" ; hgnc_id "HGNC:546" ; level 2 ; orig_coord_info "chr10,47483913,47483933,-" ; protein_id "ENSP00000463244.1" ; transcript_id "ANXA8--VSTM4^ENST00000577813.1" ; transcript_name "ANXA8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
EXOC4--CHCHD3 HAVANA gene 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--CHCHD3^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--CHCHD3^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--CHCHD3^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--CHCHD3 HAVANA mRNA 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--CHCHD3^ENST00000253861.5" ; Parent "EXOC4--CHCHD3^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--CHCHD3^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--CHCHD3^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--CHCHD3 HAVANA gene 42112 59539 . + . FI_gene_label "CHCHD3^ENSG00000106554.13" ; ID "EXOC4--CHCHD3^CHCHD3^ENSG00000106554.13" ; ccdsid "CCDS5828.1" ; exon_id "ENSE00001174753.9" ; exon_number 1 ; gene_id "EXOC4--CHCHD3^CHCHD3^ENSG00000106554.13" ; gene_name CHCHD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155231.3" ; havana_transcript "OTTHUMT00000338899.2" ; hgnc_id "HGNC:21906" ; level 2 ; orig_coord_info "chr7,133081857,133081937,-" ; protein_id "ENSP00000262570.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "EXOC4--CHCHD3^ENST00000262570.10" ; transcript_name "CHCHD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--CHCHD3 HAVANA mRNA 42112 59539 . + . FI_gene_label "CHCHD3^ENSG00000106554.13" ; ID "EXOC4--CHCHD3^ENST00000262570.10" ; Parent "EXOC4--CHCHD3^CHCHD3^ENSG00000106554.13" ; ccdsid "CCDS5828.1" ; exon_id "ENSE00001174753.9" ; exon_number 1 ; gene_id "EXOC4--CHCHD3^CHCHD3^ENSG00000106554.13" ; gene_name CHCHD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155231.3" ; havana_transcript "OTTHUMT00000338899.2" ; hgnc_id "HGNC:21906" ; level 2 ; orig_coord_info "chr7,133081857,133081937,-" ; protein_id "ENSP00000262570.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "EXOC4--CHCHD3^ENST00000262570.10" ; transcript_name "CHCHD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--FP236383.3 HAVANA gene 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--FP236383.3^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--FP236383.3^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--FP236383.3^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--FP236383.3 HAVANA mRNA 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--FP236383.3^ENST00000253861.5" ; Parent "EXOC4--FP236383.3^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--FP236383.3^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--FP236383.3^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUCY1B2--NKAIN2 HAVANA mRNA 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^ENST00000368416.5" ; Parent "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC00381--NKAIN2 HAVANA gene 10218 17864 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "LINC00381--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC00381--NKAIN2 HAVANA mRNA 10218 17864 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "LINC00381--NKAIN2^ENST00000368416.5" ; Parent "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "LINC00381--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED12L--PRKCA HAVANA gene 2198 52128 . + . FI_gene_label "MED12L^ENSG00000144893.12" ; ID "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; exon_id "ENSE00001922631.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; gene_name MED12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159844.4" ; havana_transcript "OTTHUMT00000357776.1" ; hgnc_id "HGNC:16050" ; level 2 ; orig_coord_info "chr3,151086927,151087025,+" ; protein_id "ENSP00000273432.4" ; tag basic ; transcript_id "MED12L--PRKCA^ENST00000273432.8" ; transcript_name "MED12L-201" ; transcript_support_level 2 ; transcript_type protein_coding
MED12L--PRKCA HAVANA mRNA 2198 52128 . + . FI_gene_label "MED12L^ENSG00000144893.12" ; ID "MED12L--PRKCA^ENST00000273432.8" ; Parent "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; exon_id "ENSE00001922631.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; gene_name MED12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159844.4" ; havana_transcript "OTTHUMT00000357776.1" ; hgnc_id "HGNC:16050" ; level 2 ; orig_coord_info "chr3,151086927,151087025,+" ; protein_id "ENSP00000273432.4" ; tag basic ; transcript_id "MED12L--PRKCA^ENST00000273432.8" ; transcript_name "MED12L-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MED12L--PRKCA HAVANA gene 58706 78927 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MED12L--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MED12L--PRKCA HAVANA mRNA 58706 78927 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "MED12L--PRKCA^ENST00000284384.6" ; Parent "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MED12L--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MRPL39--SLC4A4 HAVANA gene 17059 50370 . + . FI_gene_label "SLC4A4^ENSG00000080493.18" ; ID "MRPL39--SLC4A4^SLC4A4^ENSG00000080493.18" ; ccdsid "CCDS43236.1" ; exon_id "ENSE00001170749.3" ; exon_number 2 ; gene_id "MRPL39--SLC4A4^SLC4A4^ENSG00000080493.18" ; gene_name SLC4A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129907.7" ; havana_transcript "OTTHUMT00000362090.4" ; hgnc_id "HGNC:11030" ; level 2 ; orig_coord_info "chr4,71236577,71236649,+" ; protein_id "ENSP00000264485.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL39--SLC4A4^ENST00000264485.11" ; transcript_name "SLC4A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL39--SLC4A4 HAVANA mRNA 17059 50370 . + . FI_gene_label "SLC4A4^ENSG00000080493.18" ; ID "MRPL39--SLC4A4^ENST00000264485.11" ; Parent "MRPL39--SLC4A4^SLC4A4^ENSG00000080493.18" ; ccdsid "CCDS43236.1" ; exon_id "ENSE00001170749.3" ; exon_number 2 ; gene_id "MRPL39--SLC4A4^SLC4A4^ENSG00000080493.18" ; gene_name SLC4A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129907.7" ; havana_transcript "OTTHUMT00000362090.4" ; hgnc_id "HGNC:11030" ; level 2 ; orig_coord_info "chr4,71236577,71236649,+" ; protein_id "ENSP00000264485.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL39--SLC4A4^ENST00000264485.11" ; transcript_name "SLC4A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL39--SLC4A4 HAVANA gene 1001 11873 . + . FI_gene_label "MRPL39^ENSG00000154719.14" ; ID "MRPL39--SLC4A4^MRPL39^ENSG00000154719.14" ; ccdsid "CCDS33522.1" ; exon_id "ENSE00001316199.3" ; exon_number 1 ; gene_id "MRPL39--SLC4A4^MRPL39^ENSG00000154719.14" ; gene_name MRPL39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000078371.4" ; havana_transcript "OTTHUMT00000171195.2" ; hgnc_id "HGNC:14027" ; level 2 ; orig_coord_info "chr21,25607403,25607475,-" ; protein_id "ENSP00000305682.7" ; tag basic CCDS ; transcript_id "MRPL39--SLC4A4^ENST00000307301.11" ; transcript_name "MRPL39-201" ; transcript_support_level 5 ; transcript_type protein_coding
MRPL39--SLC4A4 HAVANA mRNA 1001 11873 . + . FI_gene_label "MRPL39^ENSG00000154719.14" ; ID "MRPL39--SLC4A4^ENST00000307301.11" ; Parent "MRPL39--SLC4A4^MRPL39^ENSG00000154719.14" ; ccdsid "CCDS33522.1" ; exon_id "ENSE00001316199.3" ; exon_number 1 ; gene_id "MRPL39--SLC4A4^MRPL39^ENSG00000154719.14" ; gene_name MRPL39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000078371.4" ; havana_transcript "OTTHUMT00000171195.2" ; hgnc_id "HGNC:14027" ; level 2 ; orig_coord_info "chr21,25607403,25607475,-" ; protein_id "ENSP00000305682.7" ; tag basic CCDS ; transcript_id "MRPL39--SLC4A4^ENST00000307301.11" ; transcript_name "MRPL39-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MTRF1LP2--GSDMC HAVANA gene 5703 17732 . + . FI_gene_label "GSDMC^ENSG00000147697.9" ; ID "MTRF1LP2--GSDMC^GSDMC^ENSG00000147697.9" ; ccdsid "CCDS6360.1" ; exon_id "ENSE00001089778.5" ; exon_number 2 ; gene_id "MTRF1LP2--GSDMC^GSDMC^ENSG00000147697.9" ; gene_name GSDMC ; gene_type protein_coding ; havana_gene "OTTHUMG00000164851.2" ; havana_transcript "OTTHUMT00000380586.2" ; hgnc_id "HGNC:7151" ; level 2 ; orig_coord_info "chr8,129777368,129777587,-" ; protein_id "ENSP00000276708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTRF1LP2--GSDMC^ENST00000276708.9" ; transcript_name "GSDMC-201" ; transcript_support_level 1 ; transcript_type protein_coding
MTRF1LP2--GSDMC HAVANA mRNA 5703 17732 . + . FI_gene_label "GSDMC^ENSG00000147697.9" ; ID "MTRF1LP2--GSDMC^ENST00000276708.9" ; Parent "MTRF1LP2--GSDMC^GSDMC^ENSG00000147697.9" ; ccdsid "CCDS6360.1" ; exon_id "ENSE00001089778.5" ; exon_number 2 ; gene_id "MTRF1LP2--GSDMC^GSDMC^ENSG00000147697.9" ; gene_name GSDMC ; gene_type protein_coding ; havana_gene "OTTHUMG00000164851.2" ; havana_transcript "OTTHUMT00000380586.2" ; hgnc_id "HGNC:7151" ; level 2 ; orig_coord_info "chr8,129777368,129777587,-" ; protein_id "ENSP00000276708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTRF1LP2--GSDMC^ENST00000276708.9" ; transcript_name "GSDMC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--SPAG17 HAVANA gene 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--SPAG17^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--SPAG17^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--SPAG17^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2--SPAG17 HAVANA mRNA 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--SPAG17^ENST00000256646.7" ; Parent "NOTCH2--SPAG17^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--SPAG17^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--SPAG17^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--SPAG17 HAVANA gene 58986 112385 . + . FI_gene_label "SPAG17^ENSG00000155761.14" ; ID "NOTCH2--SPAG17^SPAG17^ENSG00000155761.14" ; ccdsid "CCDS899.1" ; exon_id "ENSE00003551381.2" ; exon_number 1 ; gene_id "NOTCH2--SPAG17^SPAG17^ENSG00000155761.14" ; gene_name SPAG17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012198.5" ; havana_transcript "OTTHUMT00000033723.3" ; hgnc_id "HGNC:26620" ; level 2 ; orig_coord_info "chr1,118185071,118185157,-" ; protein_id "ENSP00000337804.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--SPAG17^ENST00000336338.10" ; transcript_name "SPAG17-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2--SPAG17 HAVANA mRNA 58986 112385 . + . FI_gene_label "SPAG17^ENSG00000155761.14" ; ID "NOTCH2--SPAG17^ENST00000336338.10" ; Parent "NOTCH2--SPAG17^SPAG17^ENSG00000155761.14" ; ccdsid "CCDS899.1" ; exon_id "ENSE00003551381.2" ; exon_number 1 ; gene_id "NOTCH2--SPAG17^SPAG17^ENSG00000155761.14" ; gene_name SPAG17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012198.5" ; havana_transcript "OTTHUMT00000033723.3" ; hgnc_id "HGNC:26620" ; level 2 ; orig_coord_info "chr1,118185071,118185157,-" ; protein_id "ENSP00000337804.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--SPAG17^ENST00000336338.10" ; transcript_name "SPAG17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NXPE3--AC078828.1 HAVANA gene 1010 16960 . + . FI_gene_label "NXPE3^ENSG00000144815.16" ; ID "NXPE3--AC078828.1^NXPE3^ENSG00000144815.16" ; ccdsid "CCDS2945.1" ; exon_id "ENSE00001249029.8" ; exon_number 4 ; gene_id "NXPE3--AC078828.1^NXPE3^ENSG00000144815.16" ; gene_name NXPE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159179.16" ; havana_transcript "OTTHUMT00000353712.2" ; hgnc_id "HGNC:28238" ; level 2 ; orig_coord_info "chr3,101785597,101785689,+" ; protein_id "ENSP00000273347.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NXPE3--AC078828.1^ENST00000273347.10" ; transcript_name "NXPE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NXPE3--AC078828.1 HAVANA mRNA 1010 16960 . + . FI_gene_label "NXPE3^ENSG00000144815.16" ; ID "NXPE3--AC078828.1^ENST00000273347.10" ; Parent "NXPE3--AC078828.1^NXPE3^ENSG00000144815.16" ; ccdsid "CCDS2945.1" ; exon_id "ENSE00001249029.8" ; exon_number 4 ; gene_id "NXPE3--AC078828.1^NXPE3^ENSG00000144815.16" ; gene_name NXPE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159179.16" ; havana_transcript "OTTHUMT00000353712.2" ; hgnc_id "HGNC:28238" ; level 2 ; orig_coord_info "chr3,101785597,101785689,+" ; protein_id "ENSP00000273347.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NXPE3--AC078828.1^ENST00000273347.10" ; transcript_name "NXPE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NXPE3--AC107297.1 HAVANA gene 1010 16960 . + . FI_gene_label "NXPE3^ENSG00000144815.16" ; ID "NXPE3--AC107297.1^NXPE3^ENSG00000144815.16" ; ccdsid "CCDS2945.1" ; exon_id "ENSE00001249029.8" ; exon_number 4 ; gene_id "NXPE3--AC107297.1^NXPE3^ENSG00000144815.16" ; gene_name NXPE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159179.16" ; havana_transcript "OTTHUMT00000353712.2" ; hgnc_id "HGNC:28238" ; level 2 ; orig_coord_info "chr3,101785597,101785689,+" ; protein_id "ENSP00000273347.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NXPE3--AC107297.1^ENST00000273347.10" ; transcript_name "NXPE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NXPE3--AC107297.1 HAVANA mRNA 1010 16960 . + . FI_gene_label "NXPE3^ENSG00000144815.16" ; ID "NXPE3--AC107297.1^ENST00000273347.10" ; Parent "NXPE3--AC107297.1^NXPE3^ENSG00000144815.16" ; ccdsid "CCDS2945.1" ; exon_id "ENSE00001249029.8" ; exon_number 4 ; gene_id "NXPE3--AC107297.1^NXPE3^ENSG00000144815.16" ; gene_name NXPE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159179.16" ; havana_transcript "OTTHUMT00000353712.2" ; hgnc_id "HGNC:28238" ; level 2 ; orig_coord_info "chr3,101785597,101785689,+" ; protein_id "ENSP00000273347.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NXPE3--AC107297.1^ENST00000273347.10" ; transcript_name "NXPE3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OR10Z1--CAPZB HAVANA gene 11248 38923 . + . FI_gene_label "CAPZB^ENSG00000077549.19" ; ID "OR10Z1--CAPZB^CAPZB^ENSG00000077549.19" ; ccdsid "CCDS41277.1" ; exon_id "ENSE00001546290.4" ; exon_number 1 ; gene_id "OR10Z1--CAPZB^CAPZB^ENSG00000077549.19" ; gene_name CAPZB ; gene_type protein_coding ; havana_gene "OTTHUMG00000002556.12" ; havana_transcript "OTTHUMT00000476514.3" ; hgnc_id "HGNC:1491" ; level 2 ; orig_coord_info "chr1,19485436,19485438,-" ; protein_id "ENSP00000264202.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OR10Z1--CAPZB^ENST00000264202.8" ; transcript_name "CAPZB-201" ; transcript_support_level 1 ; transcript_type protein_coding
OR10Z1--CAPZB HAVANA mRNA 11248 38923 . + . FI_gene_label "CAPZB^ENSG00000077549.19" ; ID "OR10Z1--CAPZB^ENST00000264202.8" ; Parent "OR10Z1--CAPZB^CAPZB^ENSG00000077549.19" ; ccdsid "CCDS41277.1" ; exon_id "ENSE00001546290.4" ; exon_number 1 ; gene_id "OR10Z1--CAPZB^CAPZB^ENSG00000077549.19" ; gene_name CAPZB ; gene_type protein_coding ; havana_gene "OTTHUMG00000002556.12" ; havana_transcript "OTTHUMT00000476514.3" ; hgnc_id "HGNC:1491" ; level 2 ; orig_coord_info "chr1,19485436,19485438,-" ; protein_id "ENSP00000264202.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OR10Z1--CAPZB^ENST00000264202.8" ; transcript_name "CAPZB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OR10Z1--CAPZB ENSEMBL gene 2172 3113 . + . FI_gene_label "OR10Z1^ENSG00000198967.4" ; ID "OR10Z1--CAPZB^OR10Z1^ENSG00000198967.4" ; ccdsid "CCDS30901.1" ; exon_id "ENSE00001435037.1" ; exon_number 1 ; gene_id "OR10Z1--CAPZB^OR10Z1^ENSG00000198967.4" ; gene_name OR10Z1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019637.3" ; hgnc_id "HGNC:14996" ; level 3 ; orig_coord_info "chr1,158606439,158607377,+" ; protein_id "ENSP00000354707.1" ; tag basic appris_principal_1 CCDS ; transcript_id "OR10Z1--CAPZB^ENST00000361284.1" ; transcript_name "OR10Z1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR10Z1--CAPZB ENSEMBL mRNA 2172 3113 . + . FI_gene_label "OR10Z1^ENSG00000198967.4" ; ID "OR10Z1--CAPZB^ENST00000361284.1" ; Parent "OR10Z1--CAPZB^OR10Z1^ENSG00000198967.4" ; ccdsid "CCDS30901.1" ; exon_id "ENSE00001435037.1" ; exon_number 1 ; gene_id "OR10Z1--CAPZB^OR10Z1^ENSG00000198967.4" ; gene_name OR10Z1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019637.3" ; hgnc_id "HGNC:14996" ; level 3 ; orig_coord_info "chr1,158606439,158607377,+" ; protein_id "ENSP00000354707.1" ; tag basic appris_principal_1 CCDS ; transcript_id "OR10Z1--CAPZB^ENST00000361284.1" ; transcript_name "OR10Z1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHA13 HAVANA gene 10901 19341 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA9--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA9--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA9--PCDHA13 HAVANA mRNA 10901 19341 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA9--PCDHA13^ENST00000289272.3" ; Parent "PCDHA9--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA9--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHA13 HAVANA gene 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHA13^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHA13^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHA13^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA9--PCDHA13 HAVANA mRNA 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHA13^ENST00000378122.4" ; Parent "PCDHA9--PCDHA13^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHA13^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHA13^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHAC1 HAVANA gene 10901 20916 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA9--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA9--PCDHAC1 HAVANA mRNA 10901 20916 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA9--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA9--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHAC1 HAVANA gene 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHAC1^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC1^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHAC1^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA9--PCDHAC1 HAVANA mRNA 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHAC1^ENST00000378122.4" ; Parent "PCDHA9--PCDHAC1^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC1^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHAC1^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHAC2 HAVANA gene 10907 21642 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA9--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA9--PCDHAC2 HAVANA mRNA 10907 21642 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA9--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA9--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA9--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA9--PCDHAC2 HAVANA gene 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHAC2^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC2^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHAC2^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA9--PCDHAC2 HAVANA mRNA 1001 7900 . + . FI_gene_label "PCDHA9^ENSG00000204961.7" ; ID "PCDHA9--PCDHAC2^ENST00000378122.4" ; Parent "PCDHA9--PCDHAC2^PCDHA9^ENSG00000204961.7" ; exon_id "ENSE00001476360.4" ; exon_number 1 ; gene_id "PCDHA9--PCDHAC2^PCDHA9^ENSG00000204961.7" ; gene_name PCDHA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163373.3" ; havana_transcript "OTTHUMT00000477561.1" ; hgnc_id "HGNC:8675" ; level 2 ; orig_coord_info "chr5,140848496,140851021,+" ; protein_id "ENSP00000367362.3" ; tag basic ; transcript_id "PCDHA9--PCDHAC2^ENST00000378122.4" ; transcript_name "PCDHA9-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PLXNA4--CNTNAP2 HAVANA gene 4029 49775 . + . FI_gene_label "PLXNA4^ENSG00000221866.9" ; ID "PLXNA4--CNTNAP2^PLXNA4^ENSG00000221866.9" ; ccdsid "CCDS43646.1" ; exon_id "ENSE00001262081.1" ; exon_number 2 ; gene_id "PLXNA4--CNTNAP2^PLXNA4^ENSG00000221866.9" ; gene_name PLXNA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155108.3" ; hgnc_id "HGNC:9102" ; level 2 ; orig_coord_info "chr7,132507506,132508693,-" ; protein_id "ENSP00000323194.4" ; tag NAGNAG_splice_site basic appris_principal_1 CCDS ; transcript_id "PLXNA4--CNTNAP2^ENST00000321063.8" ; transcript_name "PLXNA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PLXNA4--CNTNAP2 HAVANA mRNA 4029 49775 . + . FI_gene_label "PLXNA4^ENSG00000221866.9" ; ID "PLXNA4--CNTNAP2^ENST00000321063.8" ; Parent "PLXNA4--CNTNAP2^PLXNA4^ENSG00000221866.9" ; ccdsid "CCDS43646.1" ; exon_id "ENSE00001262081.1" ; exon_number 2 ; gene_id "PLXNA4--CNTNAP2^PLXNA4^ENSG00000221866.9" ; gene_name PLXNA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155108.3" ; hgnc_id "HGNC:9102" ; level 2 ; orig_coord_info "chr7,132507506,132508693,-" ; protein_id "ENSP00000323194.4" ; tag NAGNAG_splice_site basic appris_principal_1 CCDS ; transcript_id "PLXNA4--CNTNAP2^ENST00000321063.8" ; transcript_name "PLXNA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PLXNA4--CNTNAP2 HAVANA gene 53575 113608 . + . FI_gene_label "CNTNAP2^ENSG00000174469.23" ; ID "PLXNA4--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; ccdsid "CCDS5889.1" ; exon_id "ENSE00001384688.4" ; exon_number 1 ; gene_id "PLXNA4--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; gene_name CNTNAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152743.11" ; havana_transcript "OTTHUMT00000327668.3" ; hgnc_id "HGNC:13830" ; level 2 ; orig_coord_info "chr7,146116877,146116973,+" ; protein_id "ENSP00000354778.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLXNA4--CNTNAP2^ENST00000361727.8" ; transcript_name "CNTNAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLXNA4--CNTNAP2 HAVANA mRNA 53575 113608 . + . FI_gene_label "CNTNAP2^ENSG00000174469.23" ; ID "PLXNA4--CNTNAP2^ENST00000361727.8" ; Parent "PLXNA4--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; ccdsid "CCDS5889.1" ; exon_id "ENSE00001384688.4" ; exon_number 1 ; gene_id "PLXNA4--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; gene_name CNTNAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152743.11" ; havana_transcript "OTTHUMT00000327668.3" ; hgnc_id "HGNC:13830" ; level 2 ; orig_coord_info "chr7,146116877,146116973,+" ; protein_id "ENSP00000354778.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLXNA4--CNTNAP2^ENST00000361727.8" ; transcript_name "CNTNAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ROR2--RABL3 HAVANA gene 25457 39399 . + . FI_gene_label "RABL3^ENSG00000144840.10" ; ID "ROR2--RABL3^RABL3^ENSG00000144840.10" ; ccdsid "CCDS3001.1" ; exon_id "ENSE00001206486.3" ; exon_number 1 ; gene_id "ROR2--RABL3^RABL3^ENSG00000144840.10" ; gene_name RABL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159668.2" ; havana_transcript "OTTHUMT00000356776.1" ; hgnc_id "HGNC:18072" ; level 2 ; orig_coord_info "chr3,120742462,120742507,-" ; protein_id "ENSP00000273375.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--RABL3^ENST00000273375.8" ; transcript_name "RABL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROR2--RABL3 HAVANA mRNA 25457 39399 . + . FI_gene_label "RABL3^ENSG00000144840.10" ; ID "ROR2--RABL3^ENST00000273375.8" ; Parent "ROR2--RABL3^RABL3^ENSG00000144840.10" ; ccdsid "CCDS3001.1" ; exon_id "ENSE00001206486.3" ; exon_number 1 ; gene_id "ROR2--RABL3^RABL3^ENSG00000144840.10" ; gene_name RABL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159668.2" ; havana_transcript "OTTHUMT00000356776.1" ; hgnc_id "HGNC:18072" ; level 2 ; orig_coord_info "chr3,120742462,120742507,-" ; protein_id "ENSP00000273375.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--RABL3^ENST00000273375.8" ; transcript_name "RABL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ROR2--RABL3 HAVANA gene 1001 18483 . + . FI_gene_label "ROR2^ENSG00000169071.15" ; ID "ROR2--RABL3^ROR2^ENSG00000169071.15" ; ccdsid "CCDS6691.1" ; exon_id "ENSE00001468100.2" ; exon_number 1 ; gene_id "ROR2--RABL3^ROR2^ENSG00000169071.15" ; gene_name ROR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020211.5" ; havana_transcript "OTTHUMT00000053040.2" ; hgnc_id "HGNC:10257" ; level 2 ; orig_coord_info "chr9,91949867,91949963,-" ; protein_id "ENSP00000364860.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--RABL3^ENST00000375708.4" ; transcript_name "ROR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROR2--RABL3 HAVANA mRNA 1001 18483 . + . FI_gene_label "ROR2^ENSG00000169071.15" ; ID "ROR2--RABL3^ENST00000375708.4" ; Parent "ROR2--RABL3^ROR2^ENSG00000169071.15" ; ccdsid "CCDS6691.1" ; exon_id "ENSE00001468100.2" ; exon_number 1 ; gene_id "ROR2--RABL3^ROR2^ENSG00000169071.15" ; gene_name ROR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020211.5" ; havana_transcript "OTTHUMT00000053040.2" ; hgnc_id "HGNC:10257" ; level 2 ; orig_coord_info "chr9,91949867,91949963,-" ; protein_id "ENSP00000364860.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR2--RABL3^ENST00000375708.4" ; transcript_name "ROR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC2A9--WDR1 HAVANA gene 8846 24377 . + . FI_gene_label "SLC2A9^ENSG00000109667.12" ; ID "SLC2A9--WDR1^SLC2A9^ENSG00000109667.12" ; ccdsid "CCDS3407.1" ; exon_id "ENSE00000816684.6" ; exon_number 1 ; gene_id "SLC2A9--WDR1^SLC2A9^ENSG00000109667.12" ; gene_name SLC2A9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044263.6" ; havana_transcript "OTTHUMT00000207055.2" ; hgnc_id "HGNC:13446" ; level 2 ; orig_coord_info "chr4,10021280,10021429,-" ; protein_id "ENSP00000264784.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLC2A9--WDR1^ENST00000264784.8" ; transcript_name "SLC2A9-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC2A9--WDR1 HAVANA mRNA 8846 24377 . + . FI_gene_label "SLC2A9^ENSG00000109667.12" ; ID "SLC2A9--WDR1^ENST00000264784.8" ; Parent "SLC2A9--WDR1^SLC2A9^ENSG00000109667.12" ; ccdsid "CCDS3407.1" ; exon_id "ENSE00000816684.6" ; exon_number 1 ; gene_id "SLC2A9--WDR1^SLC2A9^ENSG00000109667.12" ; gene_name SLC2A9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044263.6" ; havana_transcript "OTTHUMT00000207055.2" ; hgnc_id "HGNC:13446" ; level 2 ; orig_coord_info "chr4,10021280,10021429,-" ; protein_id "ENSP00000264784.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLC2A9--WDR1^ENST00000264784.8" ; transcript_name "SLC2A9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC2A9--WDR1 ENSEMBL gene 31436 54791 . + . FI_gene_label "WDR1^ENSG00000071127.17" ; ID "SLC2A9--WDR1^WDR1^ENSG00000071127.17" ; exon_id "ENSE00001492135.1" ; exon_number 1 ; gene_id "SLC2A9--WDR1^WDR1^ENSG00000071127.17" ; gene_name WDR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160253.3" ; hgnc_id "HGNC:12754" ; level 3 ; orig_coord_info "chr4,10116651,10116666,-" ; protein_id "ENSP00000371889.2" ; tag basic ; transcript_id "SLC2A9--WDR1^ENST00000382451.6" ; transcript_name "WDR1-202" ; transcript_support_level 1 ; transcript_type protein_coding
SLC2A9--WDR1 ENSEMBL mRNA 31436 54791 . + . FI_gene_label "WDR1^ENSG00000071127.17" ; ID "SLC2A9--WDR1^ENST00000382451.6" ; Parent "SLC2A9--WDR1^WDR1^ENSG00000071127.17" ; exon_id "ENSE00001492135.1" ; exon_number 1 ; gene_id "SLC2A9--WDR1^WDR1^ENSG00000071127.17" ; gene_name WDR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160253.3" ; hgnc_id "HGNC:12754" ; level 3 ; orig_coord_info "chr4,10116651,10116666,-" ; protein_id "ENSP00000371889.2" ; tag basic ; transcript_id "SLC2A9--WDR1^ENST00000382451.6" ; transcript_name "WDR1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TWSG1--PTPRM HAVANA gene 1007 10658 . + . FI_gene_label "TWSG1^ENSG00000128791.12" ; ID "TWSG1--PTPRM^TWSG1^ENSG00000128791.12" ; ccdsid "CCDS11844.1" ; exon_id "ENSE00001187778.2" ; exon_number 2 ; gene_id "TWSG1--PTPRM^TWSG1^ENSG00000128791.12" ; gene_name TWSG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131597.5" ; havana_transcript "OTTHUMT00000254480.3" ; hgnc_id "HGNC:12429" ; level 2 ; orig_coord_info "chr18,9337230,9337352,+" ; protein_id "ENSP00000262120.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TWSG1--PTPRM^ENST00000262120.10" ; transcript_name "TWSG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TWSG1--PTPRM HAVANA mRNA 1007 10658 . + . FI_gene_label "TWSG1^ENSG00000128791.12" ; ID "TWSG1--PTPRM^ENST00000262120.10" ; Parent "TWSG1--PTPRM^TWSG1^ENSG00000128791.12" ; ccdsid "CCDS11844.1" ; exon_id "ENSE00001187778.2" ; exon_number 2 ; gene_id "TWSG1--PTPRM^TWSG1^ENSG00000128791.12" ; gene_name TWSG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131597.5" ; havana_transcript "OTTHUMT00000254480.3" ; hgnc_id "HGNC:12429" ; level 2 ; orig_coord_info "chr18,9337230,9337352,+" ; protein_id "ENSP00000262120.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TWSG1--PTPRM^ENST00000262120.10" ; transcript_name "TWSG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TWSG1--PTPRM HAVANA gene 13659 60902 . + . FI_gene_label "PTPRM^ENSG00000173482.17" ; ID "TWSG1--PTPRM^PTPRM^ENSG00000173482.17" ; ccdsid "CCDS11840.1" ; exon_id "ENSE00002698597.1" ; exon_number 1 ; gene_id "TWSG1--PTPRM^PTPRM^ENSG00000173482.17" ; gene_name PTPRM ; gene_type protein_coding ; havana_gene "OTTHUMG00000131575.5" ; havana_transcript "OTTHUMT00000254456.1" ; hgnc_id "HGNC:9675" ; level 2 ; orig_coord_info "chr18,7567819,7567891,+" ; protein_id "ENSP00000331418.8" ; tag basic appris_principal_4 CCDS ; transcript_id "TWSG1--PTPRM^ENST00000332175.12" ; transcript_name "PTPRM-201" ; transcript_support_level 1 ; transcript_type protein_coding
TWSG1--PTPRM HAVANA mRNA 13659 60902 . + . FI_gene_label "PTPRM^ENSG00000173482.17" ; ID "TWSG1--PTPRM^ENST00000332175.12" ; Parent "TWSG1--PTPRM^PTPRM^ENSG00000173482.17" ; ccdsid "CCDS11840.1" ; exon_id "ENSE00002698597.1" ; exon_number 1 ; gene_id "TWSG1--PTPRM^PTPRM^ENSG00000173482.17" ; gene_name PTPRM ; gene_type protein_coding ; havana_gene "OTTHUMG00000131575.5" ; havana_transcript "OTTHUMT00000254456.1" ; hgnc_id "HGNC:9675" ; level 2 ; orig_coord_info "chr18,7567819,7567891,+" ; protein_id "ENSP00000331418.8" ; tag basic appris_principal_4 CCDS ; transcript_id "TWSG1--PTPRM^ENST00000332175.12" ; transcript_name "PTPRM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WWTR1--KRT6A HAVANA gene 27380 33114 . + . FI_gene_label "KRT6A^ENSG00000205420.11" ; ID "WWTR1--KRT6A^KRT6A^ENSG00000205420.11" ; ccdsid "CCDS41786.1" ; exon_id "ENSE00001403739.4" ; exon_number 1 ; gene_id "WWTR1--KRT6A^KRT6A^ENSG00000205420.11" ; gene_name KRT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169597.3" ; havana_transcript "OTTHUMT00000404978.3" ; hgnc_id "HGNC:6443" ; level 2 ; orig_coord_info "chr12,52492649,52493188,-" ; protein_id "ENSP00000369317.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--KRT6A^ENST00000330722.7" ; transcript_name "KRT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
WWTR1--KRT6A HAVANA mRNA 27380 33114 . + . FI_gene_label "KRT6A^ENSG00000205420.11" ; ID "WWTR1--KRT6A^ENST00000330722.7" ; Parent "WWTR1--KRT6A^KRT6A^ENSG00000205420.11" ; ccdsid "CCDS41786.1" ; exon_id "ENSE00001403739.4" ; exon_number 1 ; gene_id "WWTR1--KRT6A^KRT6A^ENSG00000205420.11" ; gene_name KRT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169597.3" ; havana_transcript "OTTHUMT00000404978.3" ; hgnc_id "HGNC:6443" ; level 2 ; orig_coord_info "chr12,52492649,52493188,-" ; protein_id "ENSP00000369317.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--KRT6A^ENST00000330722.7" ; transcript_name "KRT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WWTR1--KRT6A HAVANA gene 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--KRT6A^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--KRT6A^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--KRT6A^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WWTR1--KRT6A HAVANA mRNA 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--KRT6A^ENST00000360632.8" ; Parent "WWTR1--KRT6A^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--KRT6A^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--KRT6A^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF488--VSTM4 HAVANA gene 8530 12699 . + . FI_gene_label "VSTM4^ENSG00000165633.13" ; ID "ZNF488--VSTM4^VSTM4^ENSG00000165633.13" ; ccdsid "CCDS7228.1" ; exon_id "ENSE00001340783.3" ; exon_number 1 ; gene_id "ZNF488--VSTM4^VSTM4^ENSG00000165633.13" ; gene_name VSTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018184.4" ; havana_transcript "OTTHUMT00000047967.1" ; hgnc_id "HGNC:26470" ; level 2 ; orig_coord_info "chr10,49115431,49115485,-" ; protein_id "ENSP00000298454.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF488--VSTM4^ENST00000298454.3" ; transcript_name "VSTM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF488--VSTM4 HAVANA mRNA 8530 12699 . + . FI_gene_label "VSTM4^ENSG00000165633.13" ; ID "ZNF488--VSTM4^ENST00000298454.3" ; Parent "ZNF488--VSTM4^VSTM4^ENSG00000165633.13" ; ccdsid "CCDS7228.1" ; exon_id "ENSE00001340783.3" ; exon_number 1 ; gene_id "ZNF488--VSTM4^VSTM4^ENSG00000165633.13" ; gene_name VSTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018184.4" ; havana_transcript "OTTHUMT00000047967.1" ; hgnc_id "HGNC:26470" ; level 2 ; orig_coord_info "chr10,49115431,49115485,-" ; protein_id "ENSP00000298454.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF488--VSTM4^ENST00000298454.3" ; transcript_name "VSTM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF488--VSTM4 HAVANA gene 1001 5516 . + . FI_gene_label "ZNF488^ENSG00000265763.4" ; ID "ZNF488--VSTM4^ZNF488^ENSG00000265763.4" ; ccdsid "CCDS73120.1" ; exon_id "ENSE00002692582.1" ; exon_number 2 ; gene_id "ZNF488--VSTM4^ZNF488^ENSG00000265763.4" ; gene_name ZNF488 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188322.2" ; havana_transcript "OTTHUMT00000476891.2" ; hgnc_id "HGNC:23535" ; level 2 ; orig_coord_info "chr10,47367810,47368829,-" ; protein_id "ENSP00000462269.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF488--VSTM4^ENST00000585316.3" ; transcript_name "ZNF488-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF488--VSTM4 HAVANA mRNA 1001 5516 . + . FI_gene_label "ZNF488^ENSG00000265763.4" ; ID "ZNF488--VSTM4^ENST00000585316.3" ; Parent "ZNF488--VSTM4^ZNF488^ENSG00000265763.4" ; ccdsid "CCDS73120.1" ; exon_id "ENSE00002692582.1" ; exon_number 2 ; gene_id "ZNF488--VSTM4^ZNF488^ENSG00000265763.4" ; gene_name ZNF488 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188322.2" ; havana_transcript "OTTHUMT00000476891.2" ; hgnc_id "HGNC:23535" ; level 2 ; orig_coord_info "chr10,47367810,47368829,-" ; protein_id "ENSP00000462269.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF488--VSTM4^ENST00000585316.3" ; transcript_name "ZNF488-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC020550.2--APBA1 HAVANA gene 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
AC020550.2--APBA1 HAVANA RNA 1001 2134 . + . FI_gene_label "AC020550.2^ENSG00000287858.1" ; ID "AC020550.2--APBA1^ENST00000664764.1" ; Parent "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; exon_id "ENSE00003881987.1" ; exon_number 1 ; gene_id "AC020550.2--APBA1^AC020550.2^ENSG00000287858.1" ; gene_name "AC020550.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195766.1" ; havana_transcript "OTTHUMT00000528638.1" ; level 2 ; orig_coord_info "chr2,197640441,197640501,+" ; tag basic TAGENE ; transcript_id "AC020550.2--APBA1^ENST00000664764.1" ; transcript_name "AC020550.2-201" ; transcript_type lncRNA
L1 and L2 created:
AC023866.2--ALB HAVANA gene 1001 3387 . + . FI_gene_label "AC023866.2^ENSG00000254222.1" ; ID "AC023866.2--ALB^AC023866.2^ENSG00000254222.1" ; exon_id "ENSE00002128990.1" ; exon_number 1 ; gene_id "AC023866.2--ALB^AC023866.2^ENSG00000254222.1" ; gene_name "AC023866.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164350.1" ; havana_transcript "OTTHUMT00000378381.1" ; level 2 ; orig_coord_info "chr8,61292005,61292039,-" ; tag basic ; transcript_id "AC023866.2--ALB^ENST00000521378.1" ; transcript_name "AC023866.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC023866.2--ALB HAVANA RNA 1001 3387 . + . FI_gene_label "AC023866.2^ENSG00000254222.1" ; ID "AC023866.2--ALB^ENST00000521378.1" ; Parent "AC023866.2--ALB^AC023866.2^ENSG00000254222.1" ; exon_id "ENSE00002128990.1" ; exon_number 1 ; gene_id "AC023866.2--ALB^AC023866.2^ENSG00000254222.1" ; gene_name "AC023866.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164350.1" ; havana_transcript "OTTHUMT00000378381.1" ; level 2 ; orig_coord_info "chr8,61292005,61292039,-" ; tag basic ; transcript_id "AC023866.2--ALB^ENST00000521378.1" ; transcript_name "AC023866.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC090735.1--PRKCA HAVANA gene 1001 2591 . + . FI_gene_label "AC090735.1^ENSG00000253784.1" ; ID "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; exon_id "ENSE00002118654.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; gene_name "AC090735.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164520.1" ; havana_transcript "OTTHUMT00000379091.1" ; level 2 ; orig_coord_info "chr8,72881699,72881740,-" ; tag basic ; transcript_id "AC090735.1--PRKCA^ENST00000523881.1" ; transcript_name "AC090735.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC090735.1--PRKCA HAVANA RNA 1001 2591 . + . FI_gene_label "AC090735.1^ENSG00000253784.1" ; ID "AC090735.1--PRKCA^ENST00000523881.1" ; Parent "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; exon_id "ENSE00002118654.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; gene_name "AC090735.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164520.1" ; havana_transcript "OTTHUMT00000379091.1" ; level 2 ; orig_coord_info "chr8,72881699,72881740,-" ; tag basic ; transcript_id "AC090735.1--PRKCA^ENST00000523881.1" ; transcript_name "AC090735.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC104041.1--APBA1 HAVANA gene 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
AC104041.1--APBA1 HAVANA RNA 3640 17052 . + . FI_gene_label "AC104041.1^ENSG00000259692.6" ; ID "AC104041.1--APBA1^ENST00000559299.2" ; Parent "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; exon_id "ENSE00002541371.1" ; exon_number 1 ; gene_id "AC104041.1--APBA1^AC104041.1^ENSG00000259692.6" ; gene_name "AC104041.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172170.6" ; havana_transcript "OTTHUMT00000417173.2" ; level 2 ; orig_coord_info "chr15,81995427,81995666,-" ; tag basic ; transcript_id "AC104041.1--APBA1^ENST00000559299.2" ; transcript_name "AC104041.1-204" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
EXOC4--FP236383.3 HAVANA gene 42112 48707 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "EXOC4--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "EXOC4--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "EXOC4--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
EXOC4--FP236383.3 HAVANA RNA 42112 48707 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "EXOC4--FP236383.3^ENST00000623860.3" ; Parent "EXOC4--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "EXOC4--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "EXOC4--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
GUCY1B2--NKAIN2 HAVANA RNA 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^ENST00000389600.6" ; Parent "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
LINC00381--NKAIN2 HAVANA gene 1016 4365 . + . FI_gene_label "LINC00381^ENSG00000226240.2" ; ID "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; exon_id "ENSE00001743371.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; gene_name LINC00381 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017081.2" ; havana_transcript "OTTHUMT00000045275.1" ; hgnc_id "HGNC:42708" ; level 2 ; orig_coord_info "chr13,74419173,74419228,+" ; transcript_id "LINC00381--NKAIN2^ENST00000423629.1" ; transcript_name "LINC00381-201" ; transcript_support_level 5 ; transcript_type lncRNA
LINC00381--NKAIN2 HAVANA RNA 1016 4365 . + . FI_gene_label "LINC00381^ENSG00000226240.2" ; ID "LINC00381--NKAIN2^ENST00000423629.1" ; Parent "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; exon_id "ENSE00001743371.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; gene_name LINC00381 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017081.2" ; havana_transcript "OTTHUMT00000045275.1" ; hgnc_id "HGNC:42708" ; level 2 ; orig_coord_info "chr13,74419173,74419228,+" ; transcript_id "LINC00381--NKAIN2^ENST00000423629.1" ; transcript_name "LINC00381-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
MTRF1LP2--GSDMC HAVANA gene 1001 2702 . + . FI_gene_label "MTRF1LP2^ENSG00000224110.3" ; ID "MTRF1LP2--GSDMC^MTRF1LP2^ENSG00000224110.3" ; exon_id "ENSE00002041386.1" ; exon_number 1 ; gene_id "MTRF1LP2--GSDMC^MTRF1LP2^ENSG00000224110.3" ; gene_name MTRF1LP2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000160430.1" ; havana_transcript "OTTHUMT00000360562.1" ; hgnc_id "HGNC:50612" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,129728744,129729307,+" ; tag pseudo_consens basic ; transcript_id "MTRF1LP2--GSDMC^ENST00000506027.1" ; transcript_name "MTRF1LP2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MTRF1LP2--GSDMC HAVANA RNA 1001 2702 . + . FI_gene_label "MTRF1LP2^ENSG00000224110.3" ; ID "MTRF1LP2--GSDMC^ENST00000506027.1" ; Parent "MTRF1LP2--GSDMC^MTRF1LP2^ENSG00000224110.3" ; exon_id "ENSE00002041386.1" ; exon_number 1 ; gene_id "MTRF1LP2--GSDMC^MTRF1LP2^ENSG00000224110.3" ; gene_name MTRF1LP2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000160430.1" ; havana_transcript "OTTHUMT00000360562.1" ; hgnc_id "HGNC:50612" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,129728744,129729307,+" ; tag pseudo_consens basic ; transcript_id "MTRF1LP2--GSDMC^ENST00000506027.1" ; transcript_name "MTRF1LP2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NXPE3--AC078828.1 HAVANA gene 19961 21418 . + . FI_gene_label "AC078828.1^ENSG00000243296.1" ; ID "NXPE3--AC078828.1^AC078828.1^ENSG00000243296.1" ; exon_id "ENSE00001874478.1" ; exon_number 1 ; gene_id "NXPE3--AC078828.1^AC078828.1^ENSG00000243296.1" ; gene_name "AC078828.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159412.1" ; havana_transcript "OTTHUMT00000355167.1" ; level 2 ; orig_coord_info "chr3,99500347,99500541,+" ; tag basic ; transcript_id "NXPE3--AC078828.1^ENST00000471993.1" ; transcript_name "AC078828.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
NXPE3--AC078828.1 HAVANA RNA 19961 21418 . + . FI_gene_label "AC078828.1^ENSG00000243296.1" ; ID "NXPE3--AC078828.1^ENST00000471993.1" ; Parent "NXPE3--AC078828.1^AC078828.1^ENSG00000243296.1" ; exon_id "ENSE00001874478.1" ; exon_number 1 ; gene_id "NXPE3--AC078828.1^AC078828.1^ENSG00000243296.1" ; gene_name "AC078828.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159412.1" ; havana_transcript "OTTHUMT00000355167.1" ; level 2 ; orig_coord_info "chr3,99500347,99500541,+" ; tag basic ; transcript_id "NXPE3--AC078828.1^ENST00000471993.1" ; transcript_name "AC078828.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NXPE3--AC107297.1 HAVANA gene 19961 20136 . + . FI_gene_label "AC107297.1^ENSG00000240572.1" ; ID "NXPE3--AC107297.1^AC107297.1^ENSG00000240572.1" ; exon_id "ENSE00001957728.1" ; exon_number 1 ; gene_id "NXPE3--AC107297.1^AC107297.1^ENSG00000240572.1" ; gene_name "AC107297.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159397.1" ; havana_transcript "OTTHUMT00000355112.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,99326377,99326552,-" ; tag basic ; transcript_id "NXPE3--AC107297.1^ENST00000459991.1" ; transcript_name "AC107297.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NXPE3--AC107297.1 HAVANA RNA 19961 20136 . + . FI_gene_label "AC107297.1^ENSG00000240572.1" ; ID "NXPE3--AC107297.1^ENST00000459991.1" ; Parent "NXPE3--AC107297.1^AC107297.1^ENSG00000240572.1" ; exon_id "ENSE00001957728.1" ; exon_number 1 ; gene_id "NXPE3--AC107297.1^AC107297.1^ENSG00000240572.1" ; gene_name "AC107297.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159397.1" ; havana_transcript "OTTHUMT00000355112.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,99326377,99326552,-" ; tag basic ; transcript_id "NXPE3--AC107297.1^ENST00000459991.1" ; transcript_name "AC107297.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
520 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
764 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 44 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed