Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/edc90179d880f4dd82b77f5a60bdee/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/2a4a3cb9e019f0f7cbc949228025d6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/2a4a3cb9e019f0f7cbc949228025d6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3a629bdeef588d9d7d8be6eacf91b0/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (6966913) splicing reads. 204570 splicing junctions. 166330 known splicing junctions. 38240 novel splicing junctions.
sampling 10% (13933826) splicing reads. 230809 splicing junctions. 175684 known splicing junctions. 55125 novel splicing junctions.
sampling 15% (20900739) splicing reads. 245763 splicing junctions. 180086 known splicing junctions. 65677 novel splicing junctions.
sampling 20% (27867652) splicing reads. 255236 splicing junctions. 182587 known splicing junctions. 72649 novel splicing junctions.
sampling 25% (34834565) splicing reads. 261947 splicing junctions. 184162 known splicing junctions. 77785 novel splicing junctions.
sampling 30% (41801478) splicing reads. 266901 splicing junctions. 185307 known splicing junctions. 81594 novel splicing junctions.
sampling 35% (48768391) splicing reads. 270824 splicing junctions. 186241 known splicing junctions. 84583 novel splicing junctions.
sampling 40% (55735304) splicing reads. 273826 splicing junctions. 186882 known splicing junctions. 86944 novel splicing junctions.
sampling 45% (62702217) splicing reads. 276308 splicing junctions. 187387 known splicing junctions. 88921 novel splicing junctions.
sampling 50% (69669130) splicing reads. 278361 splicing junctions. 187796 known splicing junctions. 90565 novel splicing junctions.
sampling 55% (76636043) splicing reads. 280089 splicing junctions. 188146 known splicing junctions. 91943 novel splicing junctions.
sampling 60% (83602956) splicing reads. 281552 splicing junctions. 188419 known splicing junctions. 93133 novel splicing junctions.
sampling 65% (90569869) splicing reads. 282724 splicing junctions. 188618 known splicing junctions. 94106 novel splicing junctions.
sampling 70% (97536782) splicing reads. 283717 splicing junctions. 188814 known splicing junctions. 94903 novel splicing junctions.
sampling 75% (104503695) splicing reads. 284511 splicing junctions. 188968 known splicing junctions. 95543 novel splicing junctions.
sampling 80% (111470608) splicing reads. 285189 splicing junctions. 189104 known splicing junctions. 96085 novel splicing junctions.
sampling 85% (118437521) splicing reads. 285695 splicing junctions. 189200 known splicing junctions. 96495 novel splicing junctions.
sampling 90% (125404434) splicing reads. 286072 splicing junctions. 189271 known splicing junctions. 96801 novel splicing junctions.
sampling 95% (132371347) splicing reads. 286340 splicing junctions. 189326 known splicing junctions. 97014 novel splicing junctions.
sampling 100% (139338260) splicing reads. 286525 splicing junctions. 189361 known splicing junctions. 97164 novel splicing junctions.
null device 
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