File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/8811132295e49cdd4aabee654dd324/.command.log
Size
98.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (tih_rna_sample_00690_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/1eeb04d0d3fd85fee43c1d02da3182/tih_rna_sample_00690_B23MVV7LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/add399cb8765e4a34bd8456a2748b0/tih_rna_sample_00690_B23MVV7LT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/8811132295e49cdd4aabee654dd324/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/8811132295e49cdd4aabee654dd324/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/1eeb04d0d3fd85fee43c1d02da3182/tih_rna_sample_00690_B23MVV7LT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.MGc47hy77x/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.MGc47hy77x/./star-fusion.preliminary
-sample contains 209831059 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir  -J /tmp/nxf.MGc47hy77x/tih_rna_sample_00690_B23MVV7LT4_1.Chimeric.out.junction  -O /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.MGc47hy77x/tih_rna_sample_00690_B23MVV7LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2210000], rate=52514.85/min -building interval tree based on /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2210000], rate=46805.51/min -building interval tree based on /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2180000], rate=40370.37/min 
[2190000], rate=40343.87/min 
[2200000], rate=40317.65/min -building interval tree based on /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[100000], rate=150000.00/min 
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[1840000], rate=31506.85/min 
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[1890000], rate=31755.81/min 
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[2000000], rate=32679.74/min 
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[2180000], rate=32296.30/min 
[2190000], rate=32300.88/min 
[2200000], rate=32329.17/min 
[2210000], rate=32365.15/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 8000000.00 reads per min processed...  
 7500000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5333333.33 reads per min processed...  
 5400000.00 reads per min processed...  
 5454545.45 reads per min processed...  
 5076923.08 reads per min processed...  
 5142857.14 reads per min processed...  
 5200000.00 reads per min processed...  
 4941176.47 reads per min processed...  
 5000000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4857142.86 reads per min processed...  
 4909090.91 reads per min processed...  
 4750000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4846153.85 reads per min processed...  
 4714285.71 reads per min processed...  
 4600000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4545454.55 reads per min processed...  
 4457142.86 reads per min processed...  
 4500000.00 reads per min processed...  
 4421052.63 reads per min processed...  
 4461538.46 reads per min processed...  
 4390243.90 reads per min processed...  
 4428571.43 reads per min processed...  
 4363636.36 reads per min processed...  
 4400000.00 reads per min processed...  
 4434782.61 reads per min processed...  
 4375000.00 reads per min processed...  
 4408163.27 reads per min processed...  
 4352941.18 reads per min processed...  
 4384615.38 reads per min processed...  
 4415094.34 reads per min processed...  
 4363636.36 reads per min processed...  
 4392857.14 reads per min processed...  
 4421052.63 reads per min processed...  
 4448275.86 reads per min processed...  
 4474576.27 reads per min processed...  
 4500000.00 reads per min processed...  
 4600000.00 reads per min processed...  
 4548387.10 reads per min processed...  
 4571428.57 reads per min processed...  
 4523076.92 reads per min processed...  
 4545454.55 reads per min processed...  
 4567164.18 reads per min processed...  
 4588235.29 reads per min processed...  
 4542857.14 reads per min processed...  
 4563380.28 reads per min processed...  
 4583333.33 reads per min processed...  
 4602739.73 reads per min processed...  
 4560000.00 reads per min processed...  
 4519480.52 reads per min processed...  
 4538461.54 reads per min processed...  
 4556962.03 reads per min processed...  
 4575000.00 reads per min processed...  
 4536585.37 reads per min processed...  
 4554216.87 reads per min processed...  
 4571428.57 reads per min processed...  
 4534883.72 reads per min processed...  
 4551724.14 reads per min processed...  
 4568181.82 reads per min processed...  
 4584269.66 reads per min processed...  
 4549450.55 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.MGc47hy77x/tih_rna_sample_00690_B23MVV7LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -462827.702163
EM: Round [1] log likelihood: -462584.858476
EM: Round [2] log likelihood: -462494.757583
EM: Round [3] log likelihood: -462452.352966
EM: Round [4] log likelihood: -462430.176842
EM: Round [5] log likelihood: -462417.881007
EM: Round [6] log likelihood: -462410.747417
EM: Round [7] log likelihood: -462406.423953
EM: Round [8] log likelihood: -462403.687579
EM: Round [9] log likelihood: -462401.882551
EM: Round [10] log likelihood: -462400.645846
EM: Round [11] log likelihood: -462399.769358
EM: Round [12] log likelihood: -462399.129409
EM: Round [13] log likelihood: -462398.649845
EM: Round [14] log likelihood: -462398.282170
EM: Round [15] log likelihood: -462397.994531
EM: Round [16] log likelihood: -462397.765417
EM: Round [17] log likelihood: -462397.579935
EM: Round [18] log likelihood: -462397.427545
EM: Round [19] log likelihood: -462397.300647
EM: Round [20] log likelihood: -462397.193661
EM: Round [21] log likelihood: -462397.102433
EM: Round [22] log likelihood: -462397.023823
EM: Round [23] log likelihood: -462396.955432
EM: Round [24] log likelihood: -462396.895402
EM: Round [25] log likelihood: -462396.842282
EM: Round [26] log likelihood: -462396.794924
EM: Round [27] log likelihood: -462396.752415
EM: Round [28] log likelihood: -462396.714019
EM: Round [29] log likelihood: -462396.679138
EM: Round [30] log likelihood: -462396.647287
EM: Round [31] log likelihood: -462396.618062
EM: Round [32] log likelihood: -462396.591131
EM: Round [33] log likelihood: -462396.566214
EM: Round [34] log likelihood: -462396.543077
EM: Round [35] log likelihood: -462396.521523
EM: Round [36] log likelihood: -462396.501381
EM: Round [37] log likelihood: -462396.482507
EM: Round [38] log likelihood: -462396.464777
EM: Round [39] log likelihood: -462396.448081
EM: Round [40] log likelihood: -462396.432327
EM: Round [41] log likelihood: -462396.417432
EM: Round [42] log likelihood: -462396.403324
EM: Round [43] log likelihood: -462396.389938
EM: Round [44] log likelihood: -462396.377219
EM: Round [45] log likelihood: -462396.365115
EM: Round [46] log likelihood: -462396.353581
EM: Round [47] log likelihood: -462396.342577
EM: Round [48] log likelihood: -462396.332066
EM: Round [49] log likelihood: -462396.322016
EM: Round [50] log likelihood: -462396.312395
EM: Round [51] log likelihood: -462396.303178
EM: Round [52] log likelihood: -462396.294340
EM: Round [53] log likelihood: -462396.285856
EM: Round [54] log likelihood: -462396.277708
EM: Round [55] log likelihood: -462396.269875
EM: Round [56] log likelihood: -462396.262339
EM: Round [57] log likelihood: -462396.255085
EM: Round [58] log likelihood: -462396.248097
EM: Round [59] log likelihood: -462396.241362
EM: Round [60] log likelihood: -462396.234866
EM: Round [61] log likelihood: -462396.228597
EM: Round [62] log likelihood: -462396.222543
EM: Round [63] log likelihood: -462396.216695
EM: Round [64] log likelihood: -462396.211043
EM: Round [65] log likelihood: -462396.205577
EM: Round [66] log likelihood: -462396.200288
EM: Round [67] log likelihood: -462396.195169
EM: Round [68] log likelihood: -462396.190212
EM: Round [69] log likelihood: -462396.185409
EM: Round [70] log likelihood: -462396.180755
EM: Round [71] log likelihood: -462396.176242
EM: Round [72] log likelihood: -462396.171865
EM: Round [73] log likelihood: -462396.167617
EM: Round [74] log likelihood: -462396.163495
EM: Round [75] log likelihood: -462396.159492
EM: Round [76] log likelihood: -462396.155603
EM: Round [77] log likelihood: -462396.151825
EM: Round [78] log likelihood: -462396.148153
EM: Round [79] log likelihood: -462396.144583
EM: Round [80] log likelihood: -462396.141111
EM: Round [81] log likelihood: -462396.137733
EM: Round [82] log likelihood: -462396.134446
EM: Round [83] log likelihood: -462396.131247
EM: Round [84] log likelihood: -462396.128132
EM: Round [85] log likelihood: -462396.125099
EM: Round [86] log likelihood: -462396.122144
EM: Round [87] log likelihood: -462396.119265
EM: Round [88] log likelihood: -462396.116459
EM: Round [89] log likelihood: -462396.113724
EM: Round [90] log likelihood: -462396.111058
EM: Round [91] log likelihood: -462396.108457
EM: Round [92] log likelihood: -462396.105921
EM: Round [93] log likelihood: -462396.103446
EM: Round [94] log likelihood: -462396.101032
EM: Round [95] log likelihood: -462396.098675
EM: Round [96] log likelihood: -462396.096375
EM: Round [97] log likelihood: -462396.094129
EM: Round [98] log likelihood: -462396.091935
EM: Round [99] log likelihood: -462396.089793
EM: Round [100] log likelihood: -462396.087701
EM: Round [101] log likelihood: -462396.085657
EM: Round [102] log likelihood: -462396.083659
EM: Round [103] log likelihood: -462396.081707
EM: Round [104] log likelihood: -462396.079799
EM: Round [105] log likelihood: -462396.077934
EM: Round [106] log likelihood: -462396.076111
EM: Round [107] log likelihood: -462396.074328
EM: Round [108] log likelihood: -462396.072584
EM: Round [109] log likelihood: -462396.070879
EM: Round [110] log likelihood: -462396.069211
EM: Round [111] log likelihood: -462396.067579
EM: Round [112] log likelihood: -462396.065982
EM: Round [113] log likelihood: -462396.064420
EM: Round [114] log likelihood: -462396.062891
EM: Round [115] log likelihood: -462396.061395
EM: Round [116] log likelihood: -462396.059930
EM: Round [117] log likelihood: -462396.058496
EM: Round [118] log likelihood: -462396.057092
EM: Round [119] log likelihood: -462396.055718
EM: Round [120] log likelihood: -462396.054372
EM: Round [121] log likelihood: -462396.053054
EM: Round [122] log likelihood: -462396.051763
EM: Round [123] log likelihood: -462396.050499
EM: Round [124] log likelihood: -462396.049261
EM: Round [125] log likelihood: -462396.048048
EM: Round [126] log likelihood: -462396.046859
EM: Round [127] log likelihood: -462396.045695
EM: Round [128] log likelihood: -462396.044554
EM: Round [129] log likelihood: -462396.043436
EM: Round [130] log likelihood: -462396.042341
EM: Round [131] log likelihood: -462396.041267
EM: Round [132] log likelihood: -462396.040215
EM: Round [133] log likelihood: -462396.039184
EM: Round [134] log likelihood: -462396.038173
EM: Round [135] log likelihood: -462396.037182
EM: Round [136] log likelihood: -462396.036210
EM: Round [137] log likelihood: -462396.035258
EM: Round [138] log likelihood: -462396.034324
EM: Round [139] log likelihood: -462396.033408
EM: Round [140] log likelihood: -462396.032510
EM: Round [141] log likelihood: -462396.031630
EM: Round [142] log likelihood: -462396.030767
EM: Round [143] log likelihood: -462396.029920
EM: Round [144] log likelihood: -462396.029090
EM: Round [145] log likelihood: -462396.028275
EM: Round [146] log likelihood: -462396.027477
EM: Round [147] log likelihood: -462396.026693
EM: Round [148] log likelihood: -462396.025925
EM: Round [149] log likelihood: -462396.025171
EM: Round [150] log likelihood: -462396.024431
EM: Round [151] log likelihood: -462396.023706
EM: Round [152] log likelihood: -462396.022994
EM: Round [153] log likelihood: -462396.022295
EM: Round [154] log likelihood: -462396.021610
EM: Round [155] log likelihood: -462396.020938
EM: Round [156] log likelihood: -462396.020278
EM: Round [157] log likelihood: -462396.019631
EM: Round [158] log likelihood: -462396.018996
EM: Round [159] log likelihood: -462396.018372
EM: Round [160] log likelihood: -462396.017761
EM: Round [161] log likelihood: -462396.017161
EM: Round [162] log likelihood: -462396.016571
EM: Round [163] log likelihood: -462396.015993
EM: Round [164] log likelihood: -462396.015426
EM: Round [165] log likelihood: -462396.014869
EM: Round [166] log likelihood: -462396.014322
EM: Round [167] log likelihood: -462396.013785
EM: Round [168] log likelihood: -462396.013259
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EM: Round [170] log likelihood: -462396.012234
EM: Round [171] log likelihood: -462396.011736
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EM: Round [173] log likelihood: -462396.010767
EM: Round [174] log likelihood: -462396.010295
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EM: Round [176] log likelihood: -462396.009378
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EM: Round [179] log likelihood: -462396.008065
EM: Round [180] log likelihood: -462396.007642
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EM: Round [183] log likelihood: -462396.006421
EM: Round [184] log likelihood: -462396.006029
EM: Round [185] log likelihood: -462396.005644
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EM: Round [187] log likelihood: -462396.004894
EM: Round [188] log likelihood: -462396.004529
EM: Round [189] log likelihood: -462396.004171
EM: Round [190] log likelihood: -462396.003819
EM: Round [191] log likelihood: -462396.003473
EM: Round [192] log likelihood: -462396.003134
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EM: Round [197] log likelihood: -462396.001527
EM: Round [198] log likelihood: -462396.001222
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EM: Round [202] log likelihood: -462396.000058
EM: Round [203] log likelihood: -462395.999779
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EM: Round [208] log likelihood: -462395.998460
EM: Round [209] log likelihood: -462395.998210
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EM: Round [211] log likelihood: -462395.997724
EM: Round [212] log likelihood: -462395.997487
EM: Round [213] log likelihood: -462395.997254
EM: Round [214] log likelihood: -462395.997026
EM: Round [215] log likelihood: -462395.996801
EM: Round [216] log likelihood: -462395.996580
EM: Round [217] log likelihood: -462395.996364
EM: Round [218] log likelihood: -462395.996151
EM: Round [219] log likelihood: -462395.995942
EM: Round [220] log likelihood: -462395.995736
EM: Round [221] log likelihood: -462395.995534
EM: Round [222] log likelihood: -462395.995336
EM: Round [223] log likelihood: -462395.995141
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EM: Round [226] log likelihood: -462395.994577
EM: Round [227] log likelihood: -462395.994396
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EM: Round [229] log likelihood: -462395.994042
EM: Round [230] log likelihood: -462395.993870
EM: Round [231] log likelihood: -462395.993701
EM: Round [232] log likelihood: -462395.993535
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EM: Round [238] log likelihood: -462395.992598
EM: Round [239] log likelihood: -462395.992451
EM: Round [240] log likelihood: -462395.992307
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EM: Round [243] log likelihood: -462395.991889
EM: Round [244] log likelihood: -462395.991755
EM: Round [245] log likelihood: -462395.991623
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EM: Round [248] log likelihood: -462395.991240
EM: Round [249] log likelihood: -462395.991117
EM: Round [250] log likelihood: -462395.990996
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EM: Round [253] log likelihood: -462395.990646
EM: Round [254] log likelihood: -462395.990533
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EM: Round [257] log likelihood: -462395.990206
EM: Round [258] log likelihood: -462395.990101
EM: Round [259] log likelihood: -462395.989998
EM: Round [260] log likelihood: -462395.989896
EM: Round [261] log likelihood: -462395.989796
EM: Stopping iterations at round 261 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -462273.564804
EM: Round [1] log likelihood: -462068.018051
EM: Round [2] log likelihood: -461993.640317
EM: Round [3] log likelihood: -461959.353950
EM: Round [4] log likelihood: -461941.685558
EM: Round [5] log likelihood: -461931.945235
EM: Round [6] log likelihood: -461926.282375
EM: Round [7] log likelihood: -461922.825761
EM: Round [8] log likelihood: -461920.617680
EM: Round [9] log likelihood: -461919.147701
EM: Round [10] log likelihood: -461918.132771
EM: Round [11] log likelihood: -461917.409506
EM: Round [12] log likelihood: -461916.879826
EM: Round [13] log likelihood: -461916.482638
EM: Round [14] log likelihood: -461916.178577
EM: Round [15] log likelihood: -461915.941499
EM: Round [16] log likelihood: -461915.753572
EM: Round [17] log likelihood: -461915.602347
EM: Round [18] log likelihood: -461915.478953
EM: Round [19] log likelihood: -461915.376961
EM: Round [20] log likelihood: -461915.291635
EM: Round [21] log likelihood: -461915.219442
EM: Round [22] log likelihood: -461915.157709
EM: Round [23] log likelihood: -461915.104394
EM: Round [24] log likelihood: -461915.057921
EM: Round [25] log likelihood: -461915.017059
EM: Round [26] log likelihood: -461914.980840
EM: Round [27] log likelihood: -461914.948497
EM: Round [28] log likelihood: -461914.919414
EM: Round [29] log likelihood: -461914.893095
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EM: Round [31] log likelihood: -461914.847214
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EM: Round [40] log likelihood: -461914.708352
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EM: Round [46] log likelihood: -461914.648971
EM: Round [47] log likelihood: -461914.640603
EM: Round [48] log likelihood: -461914.632589
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EM: Round [253] log likelihood: -461914.345477
EM: Round [254] log likelihood: -461914.345365
EM: Round [255] log likelihood: -461914.345256
EM: Round [256] log likelihood: -461914.345148
EM: Round [257] log likelihood: -461914.345042
EM: Round [258] log likelihood: -461914.344938
EM: Round [259] log likelihood: -461914.344836
EM: Round [260] log likelihood: -461914.344735
EM: Round [261] log likelihood: -461914.344636
EM: Stopping iterations at round 261 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 209831059 > /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir > /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir --annotate /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir
-done, see /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2193, filtered: 13799)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.MGc47hy77x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.MGc47hy77x/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000287858.1]
WARNING, no entry stored in dbm for [ENSG00000242435.1]
WARNING, no entry stored in dbm for [ENSG00000078319.10]
WARNING, no entry stored in dbm for [ENSG00000206573.9]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
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WARNING, no entry stored in dbm for [ENSG00000248927.1]
WARNING, no entry stored in dbm for [ENSG00000214975.4]
WARNING, no entry stored in dbm for [ENSG00000224939.1]
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WARNING, no entry stored in dbm for [ENSG00000219665.8]
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WARNING, no entry stored in dbm for [ENSG00000237992.3]
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WARNING, no entry stored in dbm for [ENSG00000253135.1]
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WARNING, no entry stored in dbm for [ENSG00000238121.6]
WARNING, no entry stored in dbm for [ENSG00000249348.1]
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WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259621.1]
WARNING, no entry stored in dbm for [ENSG00000287306.1]
WARNING, no entry stored in dbm for [ENSG00000255337.1]
WARNING, no entry stored in dbm for [ENSG00000239224.3]
WARNING, no entry stored in dbm for [ENSG00000227769.7]
WARNING, no entry stored in dbm for [ENSG00000229625.3]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000235438.7]
WARNING, no entry stored in dbm for [ENSG00000180438.15]
WARNING, no entry stored in dbm for [ENSG00000286116.1]
WARNING, no entry stored in dbm for [ENSG00000223989.1]
WARNING, no entry stored in dbm for [ENSG00000287189.1]
WARNING, no entry stored in dbm for [ENSG00000267532.5]
WARNING, no entry stored in dbm for [ENSG00000233079.3]
WARNING, no entry stored in dbm for [ENSG00000251161.4]
WARNING, no entry stored in dbm for [ENSG00000237590.1]
WARNING, no entry stored in dbm for [ENSG00000284977.2]
WARNING, no entry stored in dbm for [ENSG00000241693.2]
WARNING, no entry stored in dbm for [ENSG00000265078.2]
WARNING, no entry stored in dbm for [ENSG00000240233.3]
WARNING, no entry stored in dbm for [ENSG00000239202.3]
WARNING, no entry stored in dbm for [ENSG00000241198.3]
WARNING, no entry stored in dbm for [ENSG00000206573.9]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000234911.2]
WARNING, no entry stored in dbm for [ENSG00000234911.2]
WARNING, no entry stored in dbm for [ENSG00000279434.1]
WARNING, no entry stored in dbm for [ENSG00000260689.2]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000268804.1]
WARNING, no entry stored in dbm for [ENSG00000250107.1]
WARNING, no entry stored in dbm for [ENSG00000248049.7]
WARNING, no entry stored in dbm for [ENSG00000201744.1]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000234925.2]
WARNING, no entry stored in dbm for [ENSG00000237068.1]
WARNING, no entry stored in dbm for [ENSG00000285652.1]
WARNING, no entry stored in dbm for [ENSG00000236072.1]
WARNING, no entry stored in dbm for [ENSG00000232956.9]
WARNING, no entry stored in dbm for [ENSG00000286781.1]
WARNING, no entry stored in dbm for [ENSG00000189419.8]
WARNING, no entry stored in dbm for [ENSG00000224899.1]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
WARNING, no entry stored in dbm for [ENSG00000271119.1]
WARNING, no entry stored in dbm for [ENSG00000242207.1]
WARNING, no entry stored in dbm for [ENSG00000286724.1]
WARNING, no entry stored in dbm for [ENSG00000280920.1]
WARNING, no entry stored in dbm for [ENSG00000255198.4]
WARNING, no entry stored in dbm for [ENSG00000233016.7]
WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000258232.2]
WARNING, no entry stored in dbm for [ENSG00000213742.7]
WARNING, no entry stored in dbm for [ENSG00000234763.3]
WARNING, no entry stored in dbm for [ENSG00000226631.1]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [ENSG00000268818.2]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000277072.5]
WARNING, no entry stored in dbm for [ENSG00000261693.1]
WARNING, no entry stored in dbm for [ENSG00000268336.1]
WARNING, no entry stored in dbm for [ENSG00000224523.1]
WARNING, no entry stored in dbm for [ENSG00000256896.1]
WARNING, no entry stored in dbm for [ENSG00000229817.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000253541.1]
WARNING, no entry stored in dbm for [ENSG00000257228.5]
WARNING, no entry stored in dbm for [ENSG00000285190.1]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000225377.6]
WARNING, no entry stored in dbm for [ENSG00000240521.1]
WARNING, no entry stored in dbm for [ENSG00000284490.1]
WARNING, no entry stored in dbm for [ENSG00000258847.1]
WARNING, no entry stored in dbm for [ENSG00000233836.7]
WARNING, no entry stored in dbm for [ENSG00000244398.1]
WARNING, no entry stored in dbm for [ENSG00000236477.1]
WARNING, no entry stored in dbm for [ENSG00000242951.1]
WARNING, no entry stored in dbm for [ENSG00000260107.1]
WARNING, no entry stored in dbm for [ENSG00000242071.3]
WARNING, no entry stored in dbm for [ENSG00000220370.1]
WARNING, no entry stored in dbm for [ENSG00000203334.4]
WARNING, no entry stored in dbm for [ENSG00000232228.1]
WARNING, no entry stored in dbm for [ENSG00000253945.1]
WARNING, no entry stored in dbm for [ENSG00000280387.1]
WARNING, no entry stored in dbm for [ENSG00000236735.3]
WARNING, no entry stored in dbm for [ENSG00000232612.1]
WARNING, no entry stored in dbm for [ENSG00000232612.1]
WARNING, no entry stored in dbm for [ENSG00000227207.2]
WARNING, no entry stored in dbm for [ENSG00000257074.3]
WARNING, no entry stored in dbm for [ENSG00000241030.1]
WARNING, no entry stored in dbm for [ENSG00000227694.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000199327.1]
WARNING, no entry stored in dbm for [ENSG00000200296.1]
WARNING, no entry stored in dbm for [ENSG00000231160.10]
WARNING, no entry stored in dbm for [ENSG00000232160.7]
WARNING, no entry stored in dbm for [ENSG00000271270.7]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000237278.2]
WARNING, no entry stored in dbm for [ENSG00000267904.1]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000234895.1]
WARNING, no entry stored in dbm for [ENSG00000270938.1]
WARNING, no entry stored in dbm for [ENSG00000197291.9]
WARNING, no entry stored in dbm for [ENSG00000229870.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000238013.1]
WARNING, no entry stored in dbm for [ENSG00000237000.1]
WARNING, no entry stored in dbm for [ENSG00000281128.2]
WARNING, no entry stored in dbm for [ENSG00000239636.1]
WARNING, no entry stored in dbm for [ENSG00000275294.4]
WARNING, no entry stored in dbm for [ENSG00000230082.1]
WARNING, no entry stored in dbm for [ENSG00000270021.1]
WARNING, no entry stored in dbm for [ENSG00000253320.7]
WARNING, no entry stored in dbm for [ENSG00000226237.2]
WARNING, no entry stored in dbm for [ENSG00000262580.5]
WARNING, no entry stored in dbm for [ENSG00000255874.2]
WARNING, no entry stored in dbm for [ENSG00000279266.1]
WARNING, no entry stored in dbm for [ENSG00000268282.1]
WARNING, no entry stored in dbm for [ENSG00000260290.2]
WARNING, no entry stored in dbm for [ENSG00000279175.1]
WARNING, no entry stored in dbm for [ENSG00000254171.1]
WARNING, no entry stored in dbm for [ENSG00000216265.1]
WARNING, no entry stored in dbm for [ENSG00000213904.9]
WARNING, no entry stored in dbm for [ENSG00000239636.1]
WARNING, no entry stored in dbm for [ENSG00000271913.7]
WARNING, no entry stored in dbm for [ENSG00000270344.3]
WARNING, no entry stored in dbm for [ENSG00000232850.3]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000251138.7]
WARNING, no entry stored in dbm for [ENSG00000271443.1]
WARNING, no entry stored in dbm for [ENSG00000242294.6]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000239920.2]
WARNING, no entry stored in dbm for [ENSG00000223825.5]
WARNING, no entry stored in dbm for [ENSG00000271462.1]
WARNING, no entry stored in dbm for [ENSG00000235455.1]
WARNING, no entry stored in dbm for [ENSG00000251580.3]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000231806.3]
WARNING, no entry stored in dbm for [ENSG00000253438.4]
WARNING, no entry stored in dbm for [ENSG00000257894.2]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000256040.2]
WARNING, no entry stored in dbm for [ENSG00000270087.5]
WARNING, no entry stored in dbm for [ENSG00000232791.4]
WARNING, no entry stored in dbm for [ENSG00000236164.1]
WARNING, no entry stored in dbm for [ENSG00000257303.2]
WARNING, no entry stored in dbm for [ENSG00000258343.2]
WARNING, no entry stored in dbm for [ENSG00000258343.2]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000224609.8]
WARNING, no entry stored in dbm for [ENSG00000253557.6]
WARNING, no entry stored in dbm for [ENSG00000248663.6]
WARNING, no entry stored in dbm for [ENSG00000201955.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000259370.2]
WARNING, no entry stored in dbm for [ENSG00000239213.6]
WARNING, no entry stored in dbm for [ENSG00000265489.1]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000260455.2]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000256238.1]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000229344.1]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000228782.7]
WARNING, no entry stored in dbm for [ENSG00000287089.1]
WARNING, no entry stored in dbm for [ENSG00000248926.1]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000253522.6]
WARNING, no entry stored in dbm for [ENSG00000279529.1]
WARNING, no entry stored in dbm for [ENSG00000225783.8]
WARNING, no entry stored in dbm for [ENSG00000231329.8]
WARNING, no entry stored in dbm for [ENSG00000206896.1]
WARNING, no entry stored in dbm for [ENSG00000213757.3]
WARNING, no entry stored in dbm for [ENSG00000215241.4]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000226277.2]
WARNING, no entry stored in dbm for [ENSG00000234429.1]
WARNING, no entry stored in dbm for [ENSG00000260185.1]
WARNING, no entry stored in dbm for [ENSG00000287356.1]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000267278.6]
WARNING, no entry stored in dbm for [ENSG00000248973.3]
WARNING, no entry stored in dbm for [ENSG00000271848.2]
WARNING, no entry stored in dbm for [ENSG00000189238.6]
WARNING, no entry stored in dbm for [ENSG00000286512.1]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000234222.6]
WARNING, no entry stored in dbm for [ENSG00000230051.2]
WARNING, no entry stored in dbm for [ENSG00000260239.2]
WARNING, no entry stored in dbm for [ENSG00000250754.6]
WARNING, no entry stored in dbm for [ENSG00000246084.5]
WARNING, no entry stored in dbm for [ENSG00000267452.3]
WARNING, no entry stored in dbm for [ENSG00000236780.7]
WARNING, no entry stored in dbm for [ENSG00000231826.6]
WARNING, no entry stored in dbm for [ENSG00000233515.2]
WARNING, no entry stored in dbm for [ENSG00000234722.5]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000215190.9]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000258279.4]
WARNING, no entry stored in dbm for [ENSG00000224429.8]
WARNING, no entry stored in dbm for [ENSG00000250682.6]
WARNING, no entry stored in dbm for [ENSG00000233237.8]
WARNING, no entry stored in dbm for [ENSG00000236790.6]
WARNING, no entry stored in dbm for [ENSG00000225558.1]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000256667.6]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000252549.1]
WARNING, no entry stored in dbm for [ENSG00000228384.4]
WARNING, no entry stored in dbm for [ENSG00000259465.2]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000259430.2]
WARNING, no entry stored in dbm for [ENSG00000235954.7]
WARNING, no entry stored in dbm for [ENSG00000261123.1]
WARNING, no entry stored in dbm for [ENSG00000224505.2]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000214617.9]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000164669.13]
WARNING, no entry stored in dbm for [ENSG00000226002.1]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000223930.7]
WARNING, no entry stored in dbm for [ENSG00000228782.7]
WARNING, no entry stored in dbm for [ENSG00000255964.1]
WARNING, no entry stored in dbm for [ENSG00000228036.1]
WARNING, no entry stored in dbm for [ENSG00000229415.10]
WARNING, no entry stored in dbm for [ENSG00000238105.7]
WARNING, no entry stored in dbm for [ENSG00000221819.6]
WARNING, no entry stored in dbm for [ENSG00000197536.11]
WARNING, no entry stored in dbm for [ENSG00000251099.2]
WARNING, no entry stored in dbm for [ENSG00000132967.9]
WARNING, no entry stored in dbm for [ENSG00000132967.9]
WARNING, no entry stored in dbm for [ENSG00000229316.1]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000233606.2]
WARNING, no entry stored in dbm for [ENSG00000233012.2]
WARNING, no entry stored in dbm for [ENSG00000223383.1]
WARNING, no entry stored in dbm for [ENSG00000223795.2]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000224316.1]
WARNING, no entry stored in dbm for [ENSG00000275833.1]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000247498.10]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000244300.3]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000201098.1]
WARNING, no entry stored in dbm for [ENSG00000207863.1]
WARNING, no entry stored in dbm for [ENSG00000207971.1]
WARNING, no entry stored in dbm for [ENSG00000243033.2]
WARNING, no entry stored in dbm for [ENSG00000230613.1]
WARNING, no entry stored in dbm for [ENSG00000200434.1]
WARNING, no entry stored in dbm for [ENSG00000261741.5]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000229951.5]
WARNING, no entry stored in dbm for [ENSG00000261586.2]
WARNING, no entry stored in dbm for [ENSG00000117242.7]
WARNING, no entry stored in dbm for [ENSG00000239470.3]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000286833.1]
WARNING, no entry stored in dbm for [ENSG00000271596.1]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000224216.1]
WARNING, no entry stored in dbm for [ENSG00000261541.1]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000230102.8]
WARNING, no entry stored in dbm for [ENSG00000236810.6]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000262294.1]
WARNING, no entry stored in dbm for [ENSG00000228415.3]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000274328.1]
WARNING, no entry stored in dbm for [ENSG00000286550.1]
WARNING, no entry stored in dbm for [ENSG00000259428.1]
WARNING, no entry stored in dbm for [ENSG00000232907.8]
WARNING, no entry stored in dbm for [ENSG00000267586.7]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000237775.1]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000226450.2]
WARNING, no entry stored in dbm for [ENSG00000269896.2]
WARNING, no entry stored in dbm for [ENSG00000279432.1]
WARNING, no entry stored in dbm for [ENSG00000225362.10]
WARNING, no entry stored in dbm for [ENSG00000203709.12]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000233327.11]
WARNING, no entry stored in dbm for [ENSG00000233025.1]
WARNING, no entry stored in dbm for [ENSG00000251432.7]
WARNING, no entry stored in dbm for [ENSG00000259906.1]
WARNING, no entry stored in dbm for [ENSG00000214548.18]
WARNING, no entry stored in dbm for [ENSG00000242070.1]
WARNING, no entry stored in dbm for [ENSG00000213976.4]
WARNING, no entry stored in dbm for [ENSG00000230185.5]
WARNING, no entry stored in dbm for [ENSG00000230795.3]
WARNING, no entry stored in dbm for [ENSG00000231784.8]
WARNING, no entry stored in dbm for [ENSG00000224039.1]
WARNING, no entry stored in dbm for [ENSG00000287903.1]
WARNING, no entry stored in dbm for [ENSG00000202538.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000254530.2]
WARNING, no entry stored in dbm for [ENSG00000240738.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000205212.5]
WARNING, no entry stored in dbm for [ENSG00000250111.3]
WARNING, no entry stored in dbm for [ENSG00000254487.2]
WARNING, no entry stored in dbm for [ENSG00000285413.1]
WARNING, no entry stored in dbm for [ENSG00000232420.2]
WARNING, no entry stored in dbm for [ENSG00000203321.2]
WARNING, no entry stored in dbm for [ENSG00000260942.1]
WARNING, no entry stored in dbm for [ENSG00000213225.7]
WARNING, no entry stored in dbm for [ENSG00000180539.8]
WARNING, no entry stored in dbm for [ENSG00000231698.2]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000280062.1]
WARNING, no entry stored in dbm for [ENSG00000268864.4]
WARNING, no entry stored in dbm for [ENSG00000254838.5]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000234964.4]
WARNING, no entry stored in dbm for [ENSG00000236105.1]
WARNING, no entry stored in dbm for [ENSG00000242145.1]
WARNING, no entry stored in dbm for [ENSG00000225929.1]
WARNING, no entry stored in dbm for [ENSG00000251079.6]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000275457.1]
WARNING, no entry stored in dbm for [ENSG00000226137.5]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000233963.2]
WARNING, no entry stored in dbm for [ENSG00000272620.2]
WARNING, no entry stored in dbm for [ENSG00000258203.5]
WARNING, no entry stored in dbm for [ENSG00000250127.1]
WARNING, no entry stored in dbm for [ENSG00000271147.8]
WARNING, no entry stored in dbm for [ENSG00000259422.1]
WARNING, no entry stored in dbm for [ENSG00000286379.1]
WARNING, no entry stored in dbm for [ENSG00000239557.1]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000227615.1]
WARNING, no entry stored in dbm for [ENSG00000255380.1]
WARNING, no entry stored in dbm for [ENSG00000266456.1]
WARNING, no entry stored in dbm for [ENSG00000260759.1]
WARNING, no entry stored in dbm for [ENSG00000260473.2]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000231317.1]
WARNING, no entry stored in dbm for [ENSG00000228980.4]
WARNING, no entry stored in dbm for [ENSG00000287636.1]
WARNING, no entry stored in dbm for [ENSG00000237879.1]
WARNING, no entry stored in dbm for [ENSG00000215067.10]
WARNING, no entry stored in dbm for [ENSG00000230021.10]
WARNING, no entry stored in dbm for [ENSG00000232576.2]
WARNING, no entry stored in dbm for [ENSG00000288670.1]
WARNING, no entry stored in dbm for [ENSG00000108958.4]
WARNING, no entry stored in dbm for [ENSG00000260604.2]
WARNING, no entry stored in dbm for [ENSG00000236252.2]
WARNING, no entry stored in dbm for [ENSG00000287514.2]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000234117.2]
WARNING, no entry stored in dbm for [ENSG00000287811.1]
WARNING, no entry stored in dbm for [ENSG00000258497.1]
WARNING, no entry stored in dbm for [ENSG00000234156.3]
WARNING, no entry stored in dbm for [ENSG00000279149.1]
WARNING, no entry stored in dbm for [ENSG00000270066.3]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000286699.1]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000225032.5]
WARNING, no entry stored in dbm for [ENSG00000224271.7]
WARNING, no entry stored in dbm for [ENSG00000225032.5]
WARNING, no entry stored in dbm for [ENSG00000256686.1]
WARNING, no entry stored in dbm for [ENSG00000287633.1]
WARNING, no entry stored in dbm for [ENSG00000239665.8]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000233183.3]
WARNING, no entry stored in dbm for [ENSG00000228943.1]
WARNING, no entry stored in dbm for [ENSG00000280296.1]
WARNING, no entry stored in dbm for [ENSG00000229116.3]
WARNING, no entry stored in dbm for [ENSG00000274893.1]
WARNING, no entry stored in dbm for [ENSG00000258875.6]
WARNING, no entry stored in dbm for [ENSG00000216775.3]
WARNING, no entry stored in dbm for [ENSG00000286381.1]
WARNING, no entry stored in dbm for [ENSG00000258525.2]
WARNING, no entry stored in dbm for [ENSG00000279110.1]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000286652.1]
WARNING, no entry stored in dbm for [ENSG00000243635.1]
WARNING, no entry stored in dbm for [ENSG00000224247.1]
WARNING, no entry stored in dbm for [ENSG00000213107.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000178803.12]
WARNING, no entry stored in dbm for [ENSG00000203876.10]
WARNING, no entry stored in dbm for [ENSG00000261143.1]
WARNING, no entry stored in dbm for [ENSG00000231365.6]
WARNING, no entry stored in dbm for [ENSG00000233006.8]
WARNING, no entry stored in dbm for [ENSG00000260409.1]
WARNING, no entry stored in dbm for [ENSG00000203262.3]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000287427.1]
WARNING, no entry stored in dbm for [ENSG00000233912.1]
WARNING, no entry stored in dbm for [ENSG00000287244.1]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000223779.6]
WARNING, no entry stored in dbm for [ENSG00000279047.4]
WARNING, no entry stored in dbm for [ENSG00000268027.5]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000249563.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000256546.2]
WARNING, no entry stored in dbm for [ENSG00000215154.6]
WARNING, no entry stored in dbm for [ENSG00000279568.1]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000283696.1]
WARNING, no entry stored in dbm for [ENSG00000260017.1]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000205632.4]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000227832.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000261845.2]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000261845.2]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000266237.1]
WARNING, no entry stored in dbm for [ENSG00000230571.2]
WARNING, no entry stored in dbm for [ENSG00000231686.1]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000250195.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000288576.1]
WARNING, no entry stored in dbm for [ENSG00000287216.1]
WARNING, no entry stored in dbm for [ENSG00000248973.3]
WARNING, no entry stored in dbm for [ENSG00000259867.6]
WARNING, no entry stored in dbm for [ENSG00000245213.7]
WARNING, no entry stored in dbm for [ENSG00000260892.1]
WARNING, no entry stored in dbm for [ENSG00000279663.3]
WARNING, no entry stored in dbm for [ENSG00000247193.3]
WARNING, no entry stored in dbm for [ENSG00000259692.6]
WARNING, no entry stored in dbm for [ENSG00000259692.6]
WARNING, no entry stored in dbm for [ENSG00000259692.6]
WARNING, no entry stored in dbm for [ENSG00000260144.1]
WARNING, no entry stored in dbm for [ENSG00000237666.2]
WARNING, no entry stored in dbm for [ENSG00000269937.1]
WARNING, no entry stored in dbm for [ENSG00000269937.1]
WARNING, no entry stored in dbm for [ENSG00000276538.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000225209.2]
WARNING, no entry stored in dbm for [ENSG00000226622.6]
WARNING, no entry stored in dbm for [ENSG00000270124.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000234686.1]
WARNING, no entry stored in dbm for [ENSG00000170409.7]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000250869.2]
WARNING, no entry stored in dbm for [ENSG00000261392.1]
WARNING, no entry stored in dbm for [ENSG00000275834.1]
WARNING, no entry stored in dbm for [ENSG00000285567.2]
WARNING, no entry stored in dbm for [ENSG00000223812.8]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000231359.3]
WARNING, no entry stored in dbm for [ENSG00000213942.3]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000258665.1]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000280138.1]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000235140.2]
WARNING, no entry stored in dbm for [ENSG00000258732.1]
WARNING, no entry stored in dbm for [ENSG00000250764.1]
WARNING, no entry stored in dbm for [ENSG00000243517.1]
WARNING, no entry stored in dbm for [ENSG00000268093.1]
WARNING, no entry stored in dbm for [ENSG00000179066.8]
WARNING, no entry stored in dbm for [ENSG00000223947.1]
WARNING, no entry stored in dbm for [ENSG00000267035.1]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000228835.1]
WARNING, no entry stored in dbm for [ENSG00000267723.1]
WARNING, no entry stored in dbm for [ENSG00000197813.6]
WARNING, no entry stored in dbm for [ENSG00000280390.1]
WARNING, no entry stored in dbm for [ENSG00000269839.1]
WARNING, no entry stored in dbm for [ENSG00000283695.1]
WARNING, no entry stored in dbm for [ENSG00000240376.1]
WARNING, no entry stored in dbm for [ENSG00000231660.1]
WARNING, no entry stored in dbm for [ENSG00000255644.1]
WARNING, no entry stored in dbm for [ENSG00000234352.9]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000267815.1]
WARNING, no entry stored in dbm for [ENSG00000273015.2]
WARNING, no entry stored in dbm for [ENSG00000255655.1]
WARNING, no entry stored in dbm for [ENSG00000242405.2]
WARNING, no entry stored in dbm for [ENSG00000286611.1]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000239701.1]
WARNING, no entry stored in dbm for [ENSG00000286125.1]
WARNING, no entry stored in dbm for [ENSG00000236531.2]
WARNING, no entry stored in dbm for [ENSG00000262966.2]
WARNING, no entry stored in dbm for [ENSG00000267623.3]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000243004.6]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000285486.1]
WARNING, no entry stored in dbm for [ENSG00000262265.2]
WARNING, no entry stored in dbm for [ENSG00000237729.2]
WARNING, no entry stored in dbm for [ENSG00000231749.3]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000228395.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.MGc47hy77x/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)