Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00569_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00569_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:04:40.632 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:04:40 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00569_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00569_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:04:40 GMT 2026] Executing as ?@nf-df3a7a270cd2fe019fc3a84b11f997a7-3e1a4-jf4h5 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:04:40 MarkDuplicates Start of doWork freeMemory: 105827328; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:04:40 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:04:40 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,050,818
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 3695 as yet unmatched pairs. 1015 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,512,411
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 6399 as yet unmatched pairs. 737 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:3,396,541
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 8364 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:6,825,114
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 12509 as yet unmatched pairs. 1403 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,731,332
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 14199 as yet unmatched pairs. 719 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,091,113
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 16101 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,887
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 19361 as yet unmatched pairs. 1150 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:16,125,202
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 20765 as yet unmatched pairs. 195 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:17,422,253
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 25217 as yet unmatched pairs. 2212 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:19,419,683
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 25678 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,830,061
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 29621 as yet unmatched pairs. 1815 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,895,810
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 31238 as yet unmatched pairs. 848 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:22,661,325
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 33521 as yet unmatched pairs. 595 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:25,901,068
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 35632 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:27,153,903
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 37781 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:29,255,354
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 40116 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,550
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 43497 as yet unmatched pairs. 999 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,555
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 48902 as yet unmatched pairs. 3900 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:37,878,272
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 47584 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:39,571,223
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 49908 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:42,929,305
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 54293 as yet unmatched pairs. 2311 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:43,956,912
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 54665 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:46,278,852
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 57185 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:54,043,505
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 59990 as yet unmatched pairs. 824 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:64,873,402
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 61825 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,858
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 65553 as yet unmatched pairs. 2066 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:94,203,961
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 65768 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,548,727
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 68270 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:113,967,854
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 70793 as yet unmatched pairs. 665 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,057
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 73223 as yet unmatched pairs. 777 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:144,897,157
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 74907 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:148,549,635
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 76216 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,432
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 79324 as yet unmatched pairs. 2218 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:150,443,260
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 78809 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,968,946
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 82220 as yet unmatched pairs. 1089 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:152,215,109
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 85052 as yet unmatched pairs. 1819 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:153,308,543
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 84983 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,398
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 87754 as yet unmatched pairs. 537 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,550,405
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 89753 as yet unmatched pairs. 394 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,061,945
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 93035 as yet unmatched pairs. 1303 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:155,614,072
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 94500 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,130,709
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 102948 as yet unmatched pairs. 6464 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,267,503
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 99671 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,959,054
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 102023 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:160,335,261
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 104635 as yet unmatched pairs. 804 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,362,340
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 107087 as yet unmatched pairs. 897 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:165,827,670
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 108503 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:169,130,015
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 118108 as yet unmatched pairs. 7421 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:173,992,835
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 113092 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:182,390,789
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 115391 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:186,318,563
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 118438 as yet unmatched pairs. 842 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:201,283,689
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 122063 as yet unmatched pairs. 2372 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:201,834,988
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 122233 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:203,799,014
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 124574 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:206,729,070
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 127216 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:212,068,672
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 128946 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:223,755,521
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 131558 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:226,392,198
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 133534 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:228,394,786
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 136453 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,517
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 141275 as yet unmatched pairs. 2375 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 3s. Last read position: chr1:244,855,445
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 142541 as yet unmatched pairs. 1247 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:3,379,852
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 144092 as yet unmatched pairs. 143385 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:10,441,568
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 147907 as yet unmatched pairs. 147185 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,876
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 157054 as yet unmatched pairs. 156305 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:24,299,931
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 151011 as yet unmatched pairs. 150254 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:27,053,960
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 153331 as yet unmatched pairs. 152567 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:27,463,096
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 155896 as yet unmatched pairs. 155130 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,039,289
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 158650 as yet unmatched pairs. 157863 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 313182 as yet unmatched pairs. 149595 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 1002791 as yet unmatched pairs. 110480 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 1226637 as yet unmatched pairs. 98139 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,417
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 1278498 as yet unmatched pairs. 95288 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:40,429,476
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 1308390 as yet unmatched pairs. 91655 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:46,375,821
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 1306684 as yet unmatched pairs. 89919 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:54,644,570
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 1304206 as yet unmatched pairs. 87421 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:55,922,388
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 1301283 as yet unmatched pairs. 84495 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:63,599,251
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 1300094 as yet unmatched pairs. 83296 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:69,245,326
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 1296598 as yet unmatched pairs. 79786 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:72,887,439
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 1294421 as yet unmatched pairs. 77597 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:74,370,690
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 1291886 as yet unmatched pairs. 75048 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:75,687,858
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 1289251 as yet unmatched pairs. 72383 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,761
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 1295090 as yet unmatched pairs. 78211 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:88,788,435
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 1284872 as yet unmatched pairs. 67988 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:96,271,124
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 1282590 as yet unmatched pairs. 65682 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:99,403,695
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 1280115 as yet unmatched pairs. 63193 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:108,730,822
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 1278745 as yet unmatched pairs. 61808 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:110,540,087
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 1276896 as yet unmatched pairs. 59956 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:113,951,828
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 1276080 as yet unmatched pairs. 59121 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:127,866,933
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 1272520 as yet unmatched pairs. 55537 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:135,052,294
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 1270084 as yet unmatched pairs. 53076 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:152,344,669
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 1268881 as yet unmatched pairs. 51861 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:161,371,172
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1266006 as yet unmatched pairs. 48971 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:172,465,600
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 1264137 as yet unmatched pairs. 47083 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:177,264,531
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 1261491 as yet unmatched pairs. 44414 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,917
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 1261965 as yet unmatched pairs. 44858 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:189,002,995
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 1262100 as yet unmatched pairs. 44977 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:189,455,389
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 1253914 as yet unmatched pairs. 36783 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:197,523,622
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 1251798 as yet unmatched pairs. 34627 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:206,445,403
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 1249435 as yet unmatched pairs. 32246 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,575
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1256547 as yet unmatched pairs. 39351 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,286
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1252631 as yet unmatched pairs. 35435 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,020
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1246958 as yet unmatched pairs. 29756 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,257
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1244256 as yet unmatched pairs. 27033 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,945
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1243676 as yet unmatched pairs. 26450 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,712
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 1242710 as yet unmatched pairs. 25473 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,891
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1234792 as yet unmatched pairs. 17540 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:219,172,657
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 1232635 as yet unmatched pairs. 15372 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:222,941,512
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 1229191 as yet unmatched pairs. 11917 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:231,464,335
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 1227028 as yet unmatched pairs. 9739 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:237,334,673
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1225738 as yet unmatched pairs. 8441 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:237,372,125
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1226359 as yet unmatched pairs. 9052 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:240,465,199
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 1220869 as yet unmatched pairs. 3554 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:4,418,105
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1217380 as yet unmatched pairs. 73284 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:10,101,260
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 1214852 as yet unmatched pairs. 70751 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:13,571,047
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1212893 as yet unmatched pairs. 68787 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:25,645,383
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 1210579 as yet unmatched pairs. 66438 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:37,993,699
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1207733 as yet unmatched pairs. 63564 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:41,236,394
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 1207013 as yet unmatched pairs. 62835 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:46,996,356
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1203500 as yet unmatched pairs. 59303 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:48,420,123
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 1200881 as yet unmatched pairs. 56680 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:48,592,000
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 1200359 as yet unmatched pairs. 56156 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,173,034
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1195251 as yet unmatched pairs. 51045 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:50,252,469
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1194144 as yet unmatched pairs. 49920 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:52,293,030
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 1190459 as yet unmatched pairs. 46235 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:53,229,017
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 1189039 as yet unmatched pairs. 44783 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:63,837,983
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1185712 as yet unmatched pairs. 41434 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:99,790,858
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 1183625 as yet unmatched pairs. 39331 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:112,638,881
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1181760 as yet unmatched pairs. 37452 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:121,694,965
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 1179329 as yet unmatched pairs. 35013 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:125,083,956
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 1177473 as yet unmatched pairs. 33146 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:128,806,381
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 1175811 as yet unmatched pairs. 31471 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:131,382,217
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 1172106 as yet unmatched pairs. 27736 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:141,913,737
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1170340 as yet unmatched pairs. 25954 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:150,622,445
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 1168630 as yet unmatched pairs. 24236 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:160,258,498
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 1165263 as yet unmatched pairs. 20859 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:172,251,344
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 1163913 as yet unmatched pairs. 19492 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:181,713,038
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 1163135 as yet unmatched pairs. 18701 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:184,166,666
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 1161791 as yet unmatched pairs. 17349 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:184,315,516
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 1158101 as yet unmatched pairs. 13654 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:184,363,543
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 1155470 as yet unmatched pairs. 11008 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,608
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 1152569 as yet unmatched pairs. 8094 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:189,890,867
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 1152469 as yet unmatched pairs. 7973 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:195,882,295
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 1147792 as yet unmatched pairs. 3274 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:197,701,012
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 1145191 as yet unmatched pairs. 660 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:1,717,094
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1142549 as yet unmatched pairs. 32068 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,907,785
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 1140303 as yet unmatched pairs. 29821 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:6,641,021
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 1137827 as yet unmatched pairs. 27330 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:12,569,135
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 1134545 as yet unmatched pairs. 24038 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,252
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 1135281 as yet unmatched pairs. 24765 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:39,842,027
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1130439 as yet unmatched pairs. 19913 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:54,287,506
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 1128537 as yet unmatched pairs. 17980 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:73,069,562
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 1125458 as yet unmatched pairs. 14883 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:82,358,634
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 1123365 as yet unmatched pairs. 12777 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:87,982,803
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 1121921 as yet unmatched pairs. 11331 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:107,902,056
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 1119097 as yet unmatched pairs. 8494 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:128,849,037
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 1116937 as yet unmatched pairs. 6324 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:151,175,258
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 1115267 as yet unmatched pairs. 4632 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:169,009,992
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1112445 as yet unmatched pairs. 1806 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:465,037
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 1110153 as yet unmatched pairs. 65314 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:6,631,898
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 1108154 as yet unmatched pairs. 63290 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:14,405,740
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 1105687 as yet unmatched pairs. 60814 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:31,538,218
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 1102812 as yet unmatched pairs. 57930 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:39,107,396
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 1100860 as yet unmatched pairs. 55965 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:56,872,945
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 1098533 as yet unmatched pairs. 53628 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:72,200,167
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 1096707 as yet unmatched pairs. 51796 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,251
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 1096606 as yet unmatched pairs. 51680 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:100,110,501
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 1092408 as yet unmatched pairs. 47472 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:131,428,964
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 1090269 as yet unmatched pairs. 45311 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:134,874,454
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 1088237 as yet unmatched pairs. 43270 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,468
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 1087892 as yet unmatched pairs. 42921 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:140,334,696
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 1083813 as yet unmatched pairs. 38816 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:141,179,447
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1081513 as yet unmatched pairs. 36502 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,575,131
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 1079105 as yet unmatched pairs. 34093 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:149,507,026
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 1077140 as yet unmatched pairs. 32120 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,368,851
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 1074304 as yet unmatched pairs. 29282 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,610
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 1102735 as yet unmatched pairs. 57712 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,153
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 1121062 as yet unmatched pairs. 76037 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,308
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1067501 as yet unmatched pairs. 22476 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:151,119,344
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1064985 as yet unmatched pairs. 19959 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:151,790,894
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 1063048 as yet unmatched pairs. 18019 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:167,876,038
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1062037 as yet unmatched pairs. 17006 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,789
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 1067309 as yet unmatched pairs. 22274 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:173,609,342
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 1056568 as yet unmatched pairs. 11523 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:177,433,538
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1054204 as yet unmatched pairs. 9139 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:179,152,241
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1051981 as yet unmatched pairs. 6910 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,034
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 1053320 as yet unmatched pairs. 8236 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:180,791,904
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 1047207 as yet unmatched pairs. 2118 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:3,849,759
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 1044069 as yet unmatched pairs. 66214 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:7,579,344
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 1043613 as yet unmatched pairs. 65743 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:11,185,373
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1040243 as yet unmatched pairs. 62347 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:21,594,544
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 1037883 as yet unmatched pairs. 59962 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,285,227
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1036208 as yet unmatched pairs. 58272 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,591
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 1038478 as yet unmatched pairs. 60522 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:30,704,181
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 1031078 as yet unmatched pairs. 53096 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,359
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 1032306 as yet unmatched pairs. 54319 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,534
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 1027675 as yet unmatched pairs. 49683 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,827,956
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 1026479 as yet unmatched pairs. 48481 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,997,280
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 1024183 as yet unmatched pairs. 46183 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,439,983
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 1026027 as yet unmatched pairs. 48015 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,938,754
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 1019996 as yet unmatched pairs. 41975 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,232
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 1018709 as yet unmatched pairs. 40680 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,587
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 1014495 as yet unmatched pairs. 36460 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:41,161,452
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 1011674 as yet unmatched pairs. 33634 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:43,143,552
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 1009527 as yet unmatched pairs. 31472 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:44,250,467
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 1007383 as yet unmatched pairs. 29320 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:56,497,495
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 1004379 as yet unmatched pairs. 26267 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:75,113,263
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 1002460 as yet unmatched pairs. 24332 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:87,675,468
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 1000349 as yet unmatched pairs. 22203 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:106,520,850
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 997902 as yet unmatched pairs. 19742 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,174
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 995501 as yet unmatched pairs. 17322 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:125,298,713
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 993515 as yet unmatched pairs. 15316 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:136,389,419
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 990851 as yet unmatched pairs. 12645 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:143,765,602
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 988406 as yet unmatched pairs. 10191 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:152,218,256
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 986076 as yet unmatched pairs. 7851 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,856
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 984742 as yet unmatched pairs. 6511 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:160,062,561
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 982113 as yet unmatched pairs. 3875 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:169,232,753
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 981031 as yet unmatched pairs. 2787 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:1,479,517
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 978151 as yet unmatched pairs. 75559 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:3,951,918
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 974174 as yet unmatched pairs. 71573 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,377,391
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 972636 as yet unmatched pairs. 70020 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,468
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 977683 as yet unmatched pairs. 75063 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,603,317
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 968380 as yet unmatched pairs. 65748 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:16,674,557
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 963939 as yet unmatched pairs. 61301 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:23,299,358
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 961988 as yet unmatched pairs. 59344 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:33,000,177
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 960338 as yet unmatched pairs. 57686 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,058,215
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 957936 as yet unmatched pairs. 55275 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:44,700,198
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 954996 as yet unmatched pairs. 52334 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:47,415,149
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 952746 as yet unmatched pairs. 50075 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:55,497,669
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 950528 as yet unmatched pairs. 47829 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,320
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 948213 as yet unmatched pairs. 45490 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:74,189,693
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 947149 as yet unmatched pairs. 44415 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:75,548,932
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 944775 as yet unmatched pairs. 42024 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:76,303,840
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 949974 as yet unmatched pairs. 47215 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:90,227,183
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 939884 as yet unmatched pairs. 37114 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,582
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 941759 as yet unmatched pairs. 38983 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,832
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 936970 as yet unmatched pairs. 34191 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:99,434,870
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 932825 as yet unmatched pairs. 30039 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,477,952
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 930707 as yet unmatched pairs. 27911 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,612
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 929472 as yet unmatched pairs. 26673 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:102,568,060
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 926674 as yet unmatched pairs. 23850 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:106,277,095
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 927406 as yet unmatched pairs. 24573 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:118,184,148
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 921850 as yet unmatched pairs. 19012 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:128,028,943
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 923009 as yet unmatched pairs. 20166 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:129,389,654
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 917339 as yet unmatched pairs. 14487 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:135,207,155
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 915308 as yet unmatched pairs. 12424 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:139,572,981
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 913508 as yet unmatched pairs. 10617 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 83s. Last read position: chr7:143,382,591
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 911886 as yet unmatched pairs. 8987 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:149,003,855
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 909687 as yet unmatched pairs. 6787 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:151,078,558
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 906695 as yet unmatched pairs. 3774 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:157,182,139
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 903586 as yet unmatched pairs. 654 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,169
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 914307 as yet unmatched pairs. 68745 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:17,967,010
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 898936 as yet unmatched pairs. 53372 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:22,415,833
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 896502 as yet unmatched pairs. 50925 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:26,643,525
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 894329 as yet unmatched pairs. 48741 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,502
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 894853 as yet unmatched pairs. 49262 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,513
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 889567 as yet unmatched pairs. 43967 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:41,618,796
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 886882 as yet unmatched pairs. 41277 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:53,715,962
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 884430 as yet unmatched pairs. 38808 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:69,601,706
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 882142 as yet unmatched pairs. 36516 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:91,040,685
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 879777 as yet unmatched pairs. 34129 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:99,501,740
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 877648 as yet unmatched pairs. 31997 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:100,925,020
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 878783 as yet unmatched pairs. 33126 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:116,655,968
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 874238 as yet unmatched pairs. 28572 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:125,003,243
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 870946 as yet unmatched pairs. 25246 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:133,239,033
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 880252 as yet unmatched pairs. 34540 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:140,830,471
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 866081 as yet unmatched pairs. 20358 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,606
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 864295 as yet unmatched pairs. 18552 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,238
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 860526 as yet unmatched pairs. 14781 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,283
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 860458 as yet unmatched pairs. 14710 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,298
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 858745 as yet unmatched pairs. 12988 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,793
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 856880 as yet unmatched pairs. 11119 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,725
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 854199 as yet unmatched pairs. 8433 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr8:144,103,063
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 850515 as yet unmatched pairs. 4742 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:144,500,592
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 847280 as yet unmatched pairs. 1495 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr9:6,413,468
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 844905 as yet unmatched pairs. 51261 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:33,038,784
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 842817 as yet unmatched pairs. 49148 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:34,616,056
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 840677 as yet unmatched pairs. 46997 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:35,608,902
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 837989 as yet unmatched pairs. 44299 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:36,197,574
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 835515 as yet unmatched pairs. 41821 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:73,160,355
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 833381 as yet unmatched pairs. 39662 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:84,814,131
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 831197 as yet unmatched pairs. 37472 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:93,107,617
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 828313 as yet unmatched pairs. 34577 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:98,826,871
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 825810 as yet unmatched pairs. 32070 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:107,283,622
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 823696 as yet unmatched pairs. 29952 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:113,583,725
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 821244 as yet unmatched pairs. 27490 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr9:116,683,421
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 818534 as yet unmatched pairs. 24777 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:124,302,005
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 817142 as yet unmatched pairs. 23373 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:127,789,258
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 814577 as yet unmatched pairs. 20802 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:128,588,834
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 811991 as yet unmatched pairs. 18215 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:130,494,981
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 809197 as yet unmatched pairs. 15414 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:131,629,147
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 807736 as yet unmatched pairs. 13939 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:134,434,230
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 804288 as yet unmatched pairs. 10483 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:134,842,175
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 803403 as yet unmatched pairs. 9589 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:136,509,935
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 799215 as yet unmatched pairs. 5398 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:137,112,215
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 796874 as yet unmatched pairs. 3046 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:885,658
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 793708 as yet unmatched pairs. 42617 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:4,975,860
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 794508 as yet unmatched pairs. 43411 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:5,525,650
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 794680 as yet unmatched pairs. 43579 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:12,828,769
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 786953 as yet unmatched pairs. 35844 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:24,501,417
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 784865 as yet unmatched pairs. 33744 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:31,521,208
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 782357 as yet unmatched pairs. 31227 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:37,952,204
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 780216 as yet unmatched pairs. 29086 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,701
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 778034 as yet unmatched pairs. 26900 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:63,197,545
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 775909 as yet unmatched pairs. 24764 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:71,751,279
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 773862 as yet unmatched pairs. 22702 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr10:74,525,293
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 771222 as yet unmatched pairs. 20057 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:79,611,969
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 771230 as yet unmatched pairs. 20054 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:89,223,708
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 767047 as yet unmatched pairs. 15863 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:96,832,335
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 764541 as yet unmatched pairs. 13353 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:101,003,785
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 762490 as yet unmatched pairs. 11289 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:103,076,240
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 759628 as yet unmatched pairs. 8416 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:116,906,737
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 757420 as yet unmatched pairs. 6204 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:122,195,048
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 754921 as yet unmatched pairs. 3696 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:126,118,182
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 753486 as yet unmatched pairs. 2241 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr11:308,282
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 751964 as yet unmatched pairs. 73103 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:694,787
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 748150 as yet unmatched pairs. 69278 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,390
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 747367 as yet unmatched pairs. 68474 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:4,070,085
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 743258 as yet unmatched pairs. 64363 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:8,731,154
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 741072 as yet unmatched pairs. 62167 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:14,260,750
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 738519 as yet unmatched pairs. 59598 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:33,348,789
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 736352 as yet unmatched pairs. 57419 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:36,446,428
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 733998 as yet unmatched pairs. 55063 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr11:46,818,433
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 731443 as yet unmatched pairs. 52502 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr11:57,416,610
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 729004 as yet unmatched pairs. 50055 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:60,389,462
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 726996 as yet unmatched pairs. 48045 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,998
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 728613 as yet unmatched pairs. 49654 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,143
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 723412 as yet unmatched pairs. 44452 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:62,616,503
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 720792 as yet unmatched pairs. 41826 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:63,902,698
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 718215 as yet unmatched pairs. 39249 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:64,766,036
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 715879 as yet unmatched pairs. 36910 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:65,341,036
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 712672 as yet unmatched pairs. 33701 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,756
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 711235 as yet unmatched pairs. 32244 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:66,271,797
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 708200 as yet unmatched pairs. 29209 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:67,284,836
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 704842 as yet unmatched pairs. 25847 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,977
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 702559 as yet unmatched pairs. 23554 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:72,001,257
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 699985 as yet unmatched pairs. 20969 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:73,716,303
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 697494 as yet unmatched pairs. 18464 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:77,701,809
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 694643 as yet unmatched pairs. 15604 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr11:94,866,042
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 692570 as yet unmatched pairs. 13519 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:108,679,539
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 690086 as yet unmatched pairs. 11021 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:118,103,127
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 688084 as yet unmatched pairs. 9016 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:119,047,807
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 685646 as yet unmatched pairs. 6571 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:121,545,379
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 683382 as yet unmatched pairs. 4306 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:128,484,996
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 681073 as yet unmatched pairs. 1993 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr12:553,378
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 679549 as yet unmatched pairs. 92641 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:2,858,901
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 676784 as yet unmatched pairs. 89867 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,235,230
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 680183 as yet unmatched pairs. 93262 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:6,537,160
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 674570 as yet unmatched pairs. 87635 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:6,855,480
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 669248 as yet unmatched pairs. 82312 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:7,062,477
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 667824 as yet unmatched pairs. 80882 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:7,933,086
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 666041 as yet unmatched pairs. 79098 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:10,220,506
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 663516 as yet unmatched pairs. 76564 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:14,536,600
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 659874 as yet unmatched pairs. 72909 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:27,014,086
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 658146 as yet unmatched pairs. 71168 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr12:43,802,413
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 656551 as yet unmatched pairs. 69566 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:48,714,467
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 653247 as yet unmatched pairs. 66259 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,887
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 652085 as yet unmatched pairs. 65096 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:49,273,116
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 650668 as yet unmatched pairs. 63678 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:50,744,593
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 647705 as yet unmatched pairs. 60714 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:52,172,281
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 644325 as yet unmatched pairs. 57328 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,458
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 645508 as yet unmatched pairs. 58506 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:52,488,477
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 653137 as yet unmatched pairs. 66124 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,852
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 661506 as yet unmatched pairs. 74487 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:52,516,742
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 644103 as yet unmatched pairs. 57078 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:53,059,046
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 635535 as yet unmatched pairs. 48509 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:53,467,228
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 637676 as yet unmatched pairs. 50643 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:54,402,060
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 631867 as yet unmatched pairs. 44833 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,296
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 631174 as yet unmatched pairs. 44136 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr12:56,713,681
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 629846 as yet unmatched pairs. 42806 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,235
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 625561 as yet unmatched pairs. 38515 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,938
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 621501 as yet unmatched pairs. 34445 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:62,383,870
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 619080 as yet unmatched pairs. 32024 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:69,350,232
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 619999 as yet unmatched pairs. 32927 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:89,466,912
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 614844 as yet unmatched pairs. 27764 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:98,515,993
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 613655 as yet unmatched pairs. 26572 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,785
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 610654 as yet unmatched pairs. 23564 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:108,565,387
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 609608 as yet unmatched pairs. 22510 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:110,453,742
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 606024 as yet unmatched pairs. 18914 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:112,949,000
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 603743 as yet unmatched pairs. 16629 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:118,036,436
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 601864 as yet unmatched pairs. 14737 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:120,462,118
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 599812 as yet unmatched pairs. 12674 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,641
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 597915 as yet unmatched pairs. 10771 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:123,671,244
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 594252 as yet unmatched pairs. 7108 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,209
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 592532 as yet unmatched pairs. 5378 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:132,509,392
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 590236 as yet unmatched pairs. 3076 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr13:20,058,584
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 587154 as yet unmatched pairs. 18066 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr13:30,462,545
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 584843 as yet unmatched pairs. 15749 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:40,666,113
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 583290 as yet unmatched pairs. 14195 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:49,131,260
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 580346 as yet unmatched pairs. 11247 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:77,326,613
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 578477 as yet unmatched pairs. 9371 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:106,559,532
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 575681 as yet unmatched pairs. 6560 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:110,424,968
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 574572 as yet unmatched pairs. 5447 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:113,297,387
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 571244 as yet unmatched pairs. 2112 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:21,092,896
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 568622 as yet unmatched pairs. 57275 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:22,901,836
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 565896 as yet unmatched pairs. 54548 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:24,121,455
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 563335 as yet unmatched pairs. 51985 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:30,628,257
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 561903 as yet unmatched pairs. 50544 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:44,962,908
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 558387 as yet unmatched pairs. 47020 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:54,417,923
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 556480 as yet unmatched pairs. 45047 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr14:61,746,930
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 554496 as yet unmatched pairs. 43055 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:68,609,071
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 551552 as yet unmatched pairs. 40109 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:71,103,617
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 549685 as yet unmatched pairs. 38229 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:74,553,036
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 548242 as yet unmatched pairs. 36782 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:75,281,097
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 550542 as yet unmatched pairs. 39082 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,801
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 543047 as yet unmatched pairs. 31585 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:94,115,893
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 542069 as yet unmatched pairs. 30603 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:101,906,492
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 538181 as yet unmatched pairs. 26712 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:102,722,316
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 535265 as yet unmatched pairs. 23795 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:104,796,288
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 532441 as yet unmatched pairs. 20965 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr14:104,947,073
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 533920 as yet unmatched pairs. 22443 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr14:105,454,297
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 528373 as yet unmatched pairs. 16890 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,193
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 533602 as yet unmatched pairs. 22117 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,179
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 553470 as yet unmatched pairs. 41981 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,401
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 551568 as yet unmatched pairs. 40079 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,388
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 544246 as yet unmatched pairs. 32754 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,580
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 546344 as yet unmatched pairs. 34847 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,921
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 553862 as yet unmatched pairs. 42365 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,777
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 542612 as yet unmatched pairs. 31105 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,982
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 526496 as yet unmatched pairs. 14987 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,340
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 514183 as yet unmatched pairs. 2670 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:22,947,189
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 511684 as yet unmatched pairs. 43568 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:32,730,871
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 512186 as yet unmatched pairs. 44070 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:38,494,515
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 507060 as yet unmatched pairs. 38942 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,900,693
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 504565 as yet unmatched pairs. 36446 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr15:42,746,022
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 502171 as yet unmatched pairs. 34049 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:44,584,372
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 500180 as yet unmatched pairs. 32055 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:50,739,695
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 497917 as yet unmatched pairs. 29790 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:59,236,639
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 495481 as yet unmatched pairs. 27347 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:63,775,118
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 493239 as yet unmatched pairs. 25094 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,158
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 492347 as yet unmatched pairs. 24200 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:71,902,941
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 488461 as yet unmatched pairs. 20311 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:73,947,884
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 486264 as yet unmatched pairs. 18110 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:74,798,857
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 483656 as yet unmatched pairs. 15499 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:75,688,670
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 481154 as yet unmatched pairs. 12993 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:80,754,240
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 478663 as yet unmatched pairs. 10494 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:84,801,954
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 476740 as yet unmatched pairs. 8567 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:89,806,359
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 474230 as yet unmatched pairs. 6050 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:90,881,453
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 473146 as yet unmatched pairs. 4957 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:99,175,107
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 469252 as yet unmatched pairs. 1054 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr16:574,674
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 467176 as yet unmatched pairs. 69416 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:1,554,926
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 464118 as yet unmatched pairs. 66344 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,111,162
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 461580 as yet unmatched pairs. 63805 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,482
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 458950 as yet unmatched pairs. 61169 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr16:3,069,287
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 456192 as yet unmatched pairs. 58408 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:4,823,879
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 453559 as yet unmatched pairs. 55775 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,684
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 451110 as yet unmatched pairs. 53317 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,131,428
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 449797 as yet unmatched pairs. 52003 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,322,799
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 447987 as yet unmatched pairs. 50192 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,500,506
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 447741 as yet unmatched pairs. 49946 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,943
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 446309 as yet unmatched pairs. 48513 records in RAM.
INFO 2026-06-08 09:18:51 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:22,308,923
INFO 2026-06-08 09:18:51 MarkDuplicates Tracking 444776 as yet unmatched pairs. 46978 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:23,682,132
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 443360 as yet unmatched pairs. 45560 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:28,714,036
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 441210 as yet unmatched pairs. 43404 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr16:29,384,212
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 439807 as yet unmatched pairs. 42001 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:29,831,057
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 438158 as yet unmatched pairs. 40351 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:30,185,272
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 435834 as yet unmatched pairs. 38023 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,664,252
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 433720 as yet unmatched pairs. 35908 records in RAM.
INFO 2026-06-08 09:19:03 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:31,091,119
INFO 2026-06-08 09:19:03 MarkDuplicates Tracking 431459 as yet unmatched pairs. 33647 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:46,674,606
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 429022 as yet unmatched pairs. 31208 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:55,483,023
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 427684 as yet unmatched pairs. 29869 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:56,683,201
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 430979 as yet unmatched pairs. 33164 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:58,018,996
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 422377 as yet unmatched pairs. 24550 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:67,194,403
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 420152 as yet unmatched pairs. 22320 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:68,231,258
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 417227 as yet unmatched pairs. 19389 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:69,931,462
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 414447 as yet unmatched pairs. 16603 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:72,060,609
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 412406 as yet unmatched pairs. 14561 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:77,193,504
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 410087 as yet unmatched pairs. 12237 records in RAM.
INFO 2026-06-08 09:19:19 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:84,745,031
INFO 2026-06-08 09:19:19 MarkDuplicates Tracking 407471 as yet unmatched pairs. 9619 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:88,429,226
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 405470 as yet unmatched pairs. 7612 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:88,721,318
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 402985 as yet unmatched pairs. 5125 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,604
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 406983 as yet unmatched pairs. 9121 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr17:1,354,246
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 399642 as yet unmatched pairs. 125286 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:1,800,647
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 394536 as yet unmatched pairs. 120178 records in RAM.
INFO 2026-06-08 09:19:30 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr17:4,541,759
INFO 2026-06-08 09:19:30 MarkDuplicates Tracking 392166 as yet unmatched pairs. 117804 records in RAM.
INFO 2026-06-08 09:19:32 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:5,023,534
INFO 2026-06-08 09:19:32 MarkDuplicates Tracking 389638 as yet unmatched pairs. 115276 records in RAM.
INFO 2026-06-08 09:19:34 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,831
INFO 2026-06-08 09:19:34 MarkDuplicates Tracking 388344 as yet unmatched pairs. 113982 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr17:7,560,406
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 385079 as yet unmatched pairs. 110716 records in RAM.
INFO 2026-06-08 09:19:38 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:7,907,940
INFO 2026-06-08 09:19:38 MarkDuplicates Tracking 382659 as yet unmatched pairs. 108295 records in RAM.
INFO 2026-06-08 09:19:40 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:15,230,969
INFO 2026-06-08 09:19:40 MarkDuplicates Tracking 380623 as yet unmatched pairs. 106248 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:17,512,601
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 378099 as yet unmatched pairs. 103724 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:19,188,038
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 375562 as yet unmatched pairs. 101182 records in RAM.
INFO 2026-06-08 09:19:45 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:28,043,173
INFO 2026-06-08 09:19:45 MarkDuplicates Tracking 373586 as yet unmatched pairs. 99203 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:28,858,711
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 371252 as yet unmatched pairs. 96862 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:30,923,021
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 369055 as yet unmatched pairs. 94664 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:35,265,697
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 367006 as yet unmatched pairs. 92611 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:36,537,321
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 364489 as yet unmatched pairs. 90094 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:38,719,838
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 363172 as yet unmatched pairs. 88759 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,393
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 360498 as yet unmatched pairs. 86084 records in RAM.
INFO 2026-06-08 09:19:56 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:41,515,570
INFO 2026-06-08 09:19:56 MarkDuplicates Tracking 357922 as yet unmatched pairs. 83508 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,548
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 365511 as yet unmatched pairs. 91094 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:41,622,979
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 363593 as yet unmatched pairs. 89176 records in RAM.
INFO 2026-06-08 09:20:01 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr17:41,810,904
INFO 2026-06-08 09:20:01 MarkDuplicates Tracking 350121 as yet unmatched pairs. 75704 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:42,708,013
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 347580 as yet unmatched pairs. 73163 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,261
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 348910 as yet unmatched pairs. 74490 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr17:46,067,609
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 342858 as yet unmatched pairs. 68438 records in RAM.
INFO 2026-06-08 09:20:08 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:49,225,046
INFO 2026-06-08 09:20:08 MarkDuplicates Tracking 340521 as yet unmatched pairs. 66095 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 128s. Last read position: chr17:50,186,436
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 346162 as yet unmatched pairs. 71736 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,515
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 375749 as yet unmatched pairs. 101321 records in RAM.
INFO 2026-06-08 09:22:20 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,582
INFO 2026-06-08 09:22:20 MarkDuplicates Tracking 367265 as yet unmatched pairs. 92837 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,402
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 360827 as yet unmatched pairs. 86399 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,010
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 370373 as yet unmatched pairs. 95944 records in RAM.
INFO 2026-06-08 09:22:25 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,902
INFO 2026-06-08 09:22:25 MarkDuplicates Tracking 360912 as yet unmatched pairs. 86480 records in RAM.
INFO 2026-06-08 09:22:27 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,651
INFO 2026-06-08 09:22:27 MarkDuplicates Tracking 359196 as yet unmatched pairs. 84752 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,988
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 367343 as yet unmatched pairs. 92884 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,602
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 354640 as yet unmatched pairs. 80181 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,463
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 347629 as yet unmatched pairs. 73170 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,181
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 352149 as yet unmatched pairs. 77688 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,048
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 378928 as yet unmatched pairs. 104467 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,226
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 332604 as yet unmatched pairs. 58141 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,353,719
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 304962 as yet unmatched pairs. 30499 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:59,062,603
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 302283 as yet unmatched pairs. 27820 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:62,520,779
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 300191 as yet unmatched pairs. 25727 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:64,502,985
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 298167 as yet unmatched pairs. 23703 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:68,537,645
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 295886 as yet unmatched pairs. 21417 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:75,497,188
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 293307 as yet unmatched pairs. 18837 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:75,923,311
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 290335 as yet unmatched pairs. 15865 records in RAM.
INFO 2026-06-08 09:22:52 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:77,488,257
INFO 2026-06-08 09:22:52 MarkDuplicates Tracking 288258 as yet unmatched pairs. 13788 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:78,974,809
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 286120 as yet unmatched pairs. 11642 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:80,354,105
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 283268 as yet unmatched pairs. 8790 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:81,665,505
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 280211 as yet unmatched pairs. 5730 records in RAM.
INFO 2026-06-08 09:22:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:82,030,613
INFO 2026-06-08 09:22:58 MarkDuplicates Tracking 277506 as yet unmatched pairs. 3025 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:82,893,545
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 275548 as yet unmatched pairs. 1067 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr18:9,708,383
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 272941 as yet unmatched pairs. 8915 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr18:26,038,587
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 270897 as yet unmatched pairs. 6869 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr18:48,949,828
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 268219 as yet unmatched pairs. 4187 records in RAM.
INFO 2026-06-08 09:23:06 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr18:62,575,211
INFO 2026-06-08 09:23:06 MarkDuplicates Tracking 265822 as yet unmatched pairs. 1789 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr19:582,756
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 264340 as yet unmatched pairs. 120960 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr19:1,093,923
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 260828 as yet unmatched pairs. 117448 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,351
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 257550 as yet unmatched pairs. 114166 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:2,223,284
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 254968 as yet unmatched pairs. 111578 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,835
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 252554 as yet unmatched pairs. 109158 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:4,704,184
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 249499 as yet unmatched pairs. 106101 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:5,896,548
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 248335 as yet unmatched pairs. 104936 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:6,833,256
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 244268 as yet unmatched pairs. 100869 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:8,463,597
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 242548 as yet unmatched pairs. 99147 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:10,149,622
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 239177 as yet unmatched pairs. 95776 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:10,567,213
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 236576 as yet unmatched pairs. 93175 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:11,021,873
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 234494 as yet unmatched pairs. 91090 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:11,448,613
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 232694 as yet unmatched pairs. 89285 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:12,763,299
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 229825 as yet unmatched pairs. 86415 records in RAM.
INFO 2026-06-08 09:23:32 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,952,696
INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 227116 as yet unmatched pairs. 83706 records in RAM.
INFO 2026-06-08 09:23:34 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:14,089,346
INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 224116 as yet unmatched pairs. 80706 records in RAM.
INFO 2026-06-08 09:23:36 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr19:14,516,685
INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 233596 as yet unmatched pairs. 90186 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr19:15,161,457
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 221681 as yet unmatched pairs. 78270 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:15,185,284
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 223566 as yet unmatched pairs. 80154 records in RAM.
INFO 2026-06-08 09:23:42 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,458
INFO 2026-06-08 09:23:42 MarkDuplicates Tracking 215549 as yet unmatched pairs. 72137 records in RAM.
INFO 2026-06-08 09:23:44 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:15,454,206
INFO 2026-06-08 09:23:44 MarkDuplicates Tracking 211022 as yet unmatched pairs. 67610 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:16,324,851
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 209594 as yet unmatched pairs. 66181 records in RAM.
INFO 2026-06-08 09:23:47 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:17,269,039
INFO 2026-06-08 09:23:47 MarkDuplicates Tracking 206742 as yet unmatched pairs. 63328 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,976
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 206441 as yet unmatched pairs. 63025 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:18,538,250
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 201831 as yet unmatched pairs. 58415 records in RAM.
INFO 2026-06-08 09:23:52 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr19:19,044,024
INFO 2026-06-08 09:23:52 MarkDuplicates Tracking 197633 as yet unmatched pairs. 54215 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,534
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 195579 as yet unmatched pairs. 52160 records in RAM.
INFO 2026-06-08 09:23:55 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:35,122,778
INFO 2026-06-08 09:23:55 MarkDuplicates Tracking 195780 as yet unmatched pairs. 52361 records in RAM.
INFO 2026-06-08 09:23:58 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr19:35,907,561
INFO 2026-06-08 09:23:58 MarkDuplicates Tracking 190438 as yet unmatched pairs. 47019 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:38,708,152
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 188170 as yet unmatched pairs. 44751 records in RAM.
INFO 2026-06-08 09:24:01 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,773
INFO 2026-06-08 09:24:01 MarkDuplicates Tracking 196924 as yet unmatched pairs. 53502 records in RAM.
INFO 2026-06-08 09:24:03 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:39,943,408
INFO 2026-06-08 09:24:03 MarkDuplicates Tracking 183989 as yet unmatched pairs. 40566 records in RAM.
INFO 2026-06-08 09:24:05 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:40,759,510
INFO 2026-06-08 09:24:05 MarkDuplicates Tracking 180443 as yet unmatched pairs. 37019 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:41,957,067
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 178672 as yet unmatched pairs. 35245 records in RAM.
INFO 2026-06-08 09:24:08 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,844
INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 177917 as yet unmatched pairs. 34490 records in RAM.
INFO 2026-06-08 09:24:10 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,906,601
INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 173304 as yet unmatched pairs. 29876 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:45,470,892
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 171623 as yet unmatched pairs. 28195 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:46,713,910
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 167111 as yet unmatched pairs. 23683 records in RAM.
INFO 2026-06-08 09:24:15 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,153,921
INFO 2026-06-08 09:24:15 MarkDuplicates Tracking 164637 as yet unmatched pairs. 21209 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:48,970,938
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 161985 as yet unmatched pairs. 18555 records in RAM.
INFO 2026-06-08 09:24:18 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,596,184
INFO 2026-06-08 09:24:18 MarkDuplicates Tracking 159530 as yet unmatched pairs. 16099 records in RAM.
INFO 2026-06-08 09:24:20 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,427
INFO 2026-06-08 09:24:20 MarkDuplicates Tracking 157394 as yet unmatched pairs. 13963 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:51,340,590
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 154116 as yet unmatched pairs. 10681 records in RAM.
INFO 2026-06-08 09:24:23 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,180,885
INFO 2026-06-08 09:24:23 MarkDuplicates Tracking 151826 as yet unmatched pairs. 8391 records in RAM.
INFO 2026-06-08 09:24:25 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,227,463
INFO 2026-06-08 09:24:25 MarkDuplicates Tracking 149170 as yet unmatched pairs. 5732 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,695,243
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 146795 as yet unmatched pairs. 3357 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:58,547,881
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 144853 as yet unmatched pairs. 1410 records in RAM.
INFO 2026-06-08 09:24:29 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:1,922,568
INFO 2026-06-08 09:24:29 MarkDuplicates Tracking 141807 as yet unmatched pairs. 36840 records in RAM.
INFO 2026-06-08 09:24:31 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:3,796,456
INFO 2026-06-08 09:24:31 MarkDuplicates Tracking 139788 as yet unmatched pairs. 34821 records in RAM.
INFO 2026-06-08 09:24:33 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:10,658,601
INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 137159 as yet unmatched pairs. 32192 records in RAM.
INFO 2026-06-08 09:24:34 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:20,025,706
INFO 2026-06-08 09:24:34 MarkDuplicates Tracking 136237 as yet unmatched pairs. 31269 records in RAM.
INFO 2026-06-08 09:24:35 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:31,514,706
INFO 2026-06-08 09:24:35 MarkDuplicates Tracking 133071 as yet unmatched pairs. 28100 records in RAM.
INFO 2026-06-08 09:24:37 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:34,291,464
INFO 2026-06-08 09:24:37 MarkDuplicates Tracking 129579 as yet unmatched pairs. 24608 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:35,655,262
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 127234 as yet unmatched pairs. 22263 records in RAM.
INFO 2026-06-08 09:24:40 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:37,393,900
INFO 2026-06-08 09:24:40 MarkDuplicates Tracking 124835 as yet unmatched pairs. 19863 records in RAM.
INFO 2026-06-08 09:24:42 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr20:43,618,954
INFO 2026-06-08 09:24:42 MarkDuplicates Tracking 122442 as yet unmatched pairs. 17465 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:45,906,346
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 121733 as yet unmatched pairs. 16756 records in RAM.
INFO 2026-06-08 09:24:45 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:49,085,371
INFO 2026-06-08 09:24:45 MarkDuplicates Tracking 117510 as yet unmatched pairs. 12533 records in RAM.
INFO 2026-06-08 09:24:47 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,679
INFO 2026-06-08 09:24:47 MarkDuplicates Tracking 115483 as yet unmatched pairs. 10503 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:58,986,776
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 113022 as yet unmatched pairs. 8042 records in RAM.
INFO 2026-06-08 09:24:50 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:62,330,558
INFO 2026-06-08 09:24:50 MarkDuplicates Tracking 111235 as yet unmatched pairs. 6255 records in RAM.
INFO 2026-06-08 09:24:52 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,764
INFO 2026-06-08 09:24:52 MarkDuplicates Tracking 109625 as yet unmatched pairs. 4638 records in RAM.
INFO 2026-06-08 09:24:53 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr21:5,159,167
INFO 2026-06-08 09:24:53 MarkDuplicates Tracking 104892 as yet unmatched pairs. 18886 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,912
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 103735 as yet unmatched pairs. 17726 records in RAM.
INFO 2026-06-08 09:24:56 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,972
INFO 2026-06-08 09:24:56 MarkDuplicates Tracking 103210 as yet unmatched pairs. 17200 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:26,051,101
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 103526 as yet unmatched pairs. 17515 records in RAM.
INFO 2026-06-08 09:24:59 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,351
INFO 2026-06-08 09:24:59 MarkDuplicates Tracking 99300 as yet unmatched pairs. 13287 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:38,423,508
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 96911 as yet unmatched pairs. 10898 records in RAM.
INFO 2026-06-08 09:25:02 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:43,959,782
INFO 2026-06-08 09:25:02 MarkDuplicates Tracking 94340 as yet unmatched pairs. 8325 records in RAM.
INFO 2026-06-08 09:25:04 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr21:45,477,786
INFO 2026-06-08 09:25:04 MarkDuplicates Tracking 93141 as yet unmatched pairs. 7126 records in RAM.
INFO 2026-06-08 09:25:05 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,891
INFO 2026-06-08 09:25:05 MarkDuplicates Tracking 90247 as yet unmatched pairs. 4231 records in RAM.
INFO 2026-06-08 09:25:07 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:46,551,676
INFO 2026-06-08 09:25:07 MarkDuplicates Tracking 86476 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 09:25:10 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr22:20,126,307
INFO 2026-06-08 09:25:10 MarkDuplicates Tracking 84145 as yet unmatched pairs. 42621 records in RAM.
INFO 2026-06-08 09:25:12 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:22,895,582
INFO 2026-06-08 09:25:12 MarkDuplicates Tracking 83283 as yet unmatched pairs. 41759 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,527
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 80775 as yet unmatched pairs. 39251 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,706
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 82554 as yet unmatched pairs. 41030 records in RAM.
INFO 2026-06-08 09:25:16 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:29,340,803
INFO 2026-06-08 09:25:16 MarkDuplicates Tracking 74486 as yet unmatched pairs. 32962 records in RAM.
INFO 2026-06-08 09:25:18 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:31,267,802
INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 72119 as yet unmatched pairs. 30595 records in RAM.
INFO 2026-06-08 09:25:19 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:36,253,191
INFO 2026-06-08 09:25:19 MarkDuplicates Tracking 70258 as yet unmatched pairs. 28734 records in RAM.
INFO 2026-06-08 09:25:21 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:36,309,282
INFO 2026-06-08 09:25:21 MarkDuplicates Tracking 68556 as yet unmatched pairs. 27032 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:37,619,732
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 64362 as yet unmatched pairs. 22838 records in RAM.
INFO 2026-06-08 09:25:24 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:38,300,930
INFO 2026-06-08 09:25:24 MarkDuplicates Tracking 62271 as yet unmatched pairs. 20747 records in RAM.
INFO 2026-06-08 09:25:26 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:39,426,850
INFO 2026-06-08 09:25:26 MarkDuplicates Tracking 59232 as yet unmatched pairs. 17708 records in RAM.
INFO 2026-06-08 09:25:27 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:41,178,528
INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 57322 as yet unmatched pairs. 15798 records in RAM.
INFO 2026-06-08 09:25:29 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:42,152,193
INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 54283 as yet unmatched pairs. 12759 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:45,203,925
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 52253 as yet unmatched pairs. 10729 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:46,974,345
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 49426 as yet unmatched pairs. 7902 records in RAM.
INFO 2026-06-08 09:25:33 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:50,283,416
INFO 2026-06-08 09:25:33 MarkDuplicates Tracking 47833 as yet unmatched pairs. 6309 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,597
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 45493 as yet unmatched pairs. 3969 records in RAM.
INFO 2026-06-08 09:25:37 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:3,309,740
INFO 2026-06-08 09:25:37 MarkDuplicates Tracking 40764 as yet unmatched pairs. 35597 records in RAM.
INFO 2026-06-08 09:25:38 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:16,853,721
INFO 2026-06-08 09:25:38 MarkDuplicates Tracking 38419 as yet unmatched pairs. 33252 records in RAM.
INFO 2026-06-08 09:25:40 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,432
INFO 2026-06-08 09:25:40 MarkDuplicates Tracking 36676 as yet unmatched pairs. 31502 records in RAM.
INFO 2026-06-08 09:25:41 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:47,567,347
INFO 2026-06-08 09:25:41 MarkDuplicates Tracking 34184 as yet unmatched pairs. 29010 records in RAM.
INFO 2026-06-08 09:25:43 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:49,034,192
INFO 2026-06-08 09:25:43 MarkDuplicates Tracking 32408 as yet unmatched pairs. 27234 records in RAM.
INFO 2026-06-08 09:25:44 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,769
INFO 2026-06-08 09:25:44 MarkDuplicates Tracking 29246 as yet unmatched pairs. 24072 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:70,258,606
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 26729 as yet unmatched pairs. 21554 records in RAM.
INFO 2026-06-08 09:25:48 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:77,969,274
INFO 2026-06-08 09:25:48 MarkDuplicates Tracking 25470 as yet unmatched pairs. 20294 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:109,674,402
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 22507 as yet unmatched pairs. 17330 records in RAM.
INFO 2026-06-08 09:25:51 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chrX:129,911,783
INFO 2026-06-08 09:25:51 MarkDuplicates Tracking 20236 as yet unmatched pairs. 15059 records in RAM.
INFO 2026-06-08 09:25:53 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:149,505,080
INFO 2026-06-08 09:25:53 MarkDuplicates Tracking 18759 as yet unmatched pairs. 13582 records in RAM.
INFO 2026-06-08 09:25:55 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:153,694,555
INFO 2026-06-08 09:25:55 MarkDuplicates Tracking 16582 as yet unmatched pairs. 11405 records in RAM.
INFO 2026-06-08 09:25:57 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:154,013,368
INFO 2026-06-08 09:25:57 MarkDuplicates Tracking 13957 as yet unmatched pairs. 8780 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,894
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 11933 as yet unmatched pairs. 6756 records in RAM.
INFO 2026-06-08 09:26:00 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:154,399,489
INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 12412 as yet unmatched pairs. 7235 records in RAM.
INFO 2026-06-08 09:26:01 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,774,617
INFO 2026-06-08 09:26:01 MarkDuplicates Tracking 6134 as yet unmatched pairs. 957 records in RAM.
INFO 2026-06-08 09:26:03 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,317
INFO 2026-06-08 09:26:03 MarkDuplicates Tracking 3212 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:26:04 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,975
INFO 2026-06-08 09:26:04 MarkDuplicates Tracking 2966 as yet unmatched pairs. 2933 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,691
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 33 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 634103626 records. 0 pairs never matched.
INFO 2026-06-08 09:26:53 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:26:53 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:26:58 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:26:58 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder Large duplicate set. size = 2166
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,764
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,002
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,227
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,024
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:27:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,756
INFO 2026-06-08 09:27:43 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:27:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,212
INFO 2026-06-08 09:27:51 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:27:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,052
INFO 2026-06-08 09:27:51 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:27:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,880
INFO 2026-06-08 09:27:52 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:27:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,704
INFO 2026-06-08 09:27:53 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:27:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,345
INFO 2026-06-08 09:27:53 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:27:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,452
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,899
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,591
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder Large duplicate set. size = 1346
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,899
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:27:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,487
INFO 2026-06-08 09:28:24 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:28:24 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:29:28 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:29:30 MarkDuplicates After generateDuplicateIndexes freeMemory: 203959792; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:29:30 MarkDuplicates Marking 302796794 records as duplicates.
INFO 2026-06-08 09:29:30 MarkDuplicates Found 27024421 optical duplicate clusters.
INFO 2026-06-08 09:29:30 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:29:47 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:19,419,683
INFO 2026-06-08 09:30:04 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:39,571,223
INFO 2026-06-08 09:30:21 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 16s. Last read position: chr1:119,916,057
INFO 2026-06-08 09:30:38 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:155,061,945
INFO 2026-06-08 09:30:55 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 17s. Last read position: chr1:182,390,789
INFO 2026-06-08 09:31:12 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 17s. Last read position: chr1:234,608,517
INFO 2026-06-08 09:31:29 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:31:46 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 16s. Last read position: chr2:74,370,690
INFO 2026-06-08 09:32:03 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 17s. Last read position: chr2:135,052,294
INFO 2026-06-08 09:32:21 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 17s. Last read position: chr2:215,365,575
INFO 2026-06-08 09:32:38 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 17s. Last read position: chr2:237,334,673
INFO 2026-06-08 09:32:55 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:25s. Time for last 10,000,000: 17s. Last read position: chr3:48,420,123
INFO 2026-06-08 09:33:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 17s. Last read position: chr3:125,083,956
INFO 2026-06-08 09:33:30 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:59s. Time for last 10,000,000: 17s. Last read position: chr3:184,363,543
INFO 2026-06-08 09:33:47 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 17s. Last read position: chr4:39,842,027
INFO 2026-06-08 09:34:04 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 17s. Last read position: chr5:6,631,898
INFO 2026-06-08 09:34:21 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 17s. Last read position: chr5:138,467,468
INFO 2026-06-08 09:34:38 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 16s. Last read position: chr5:151,790,894
INFO 2026-06-08 09:34:55 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 16s. Last read position: chr6:11,185,373
INFO 2026-06-08 09:35:11 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 16s. Last read position: chr6:32,938,754
INFO 2026-06-08 09:35:29 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 17s. Last read position: chr6:113,860,174
INFO 2026-06-08 09:35:46 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 17s. Last read position: chr7:5,377,391
INFO 2026-06-08 09:36:02 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:32s. Time for last 10,000,000: 16s. Last read position: chr7:72,942,320
INFO 2026-06-08 09:36:19 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 16s. Last read position: chr7:102,568,060
INFO 2026-06-08 09:36:36 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:06s. Time for last 10,000,000: 16s. Last read position: chr7:157,182,139
INFO 2026-06-08 09:36:54 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 17s. Last read position: chr8:91,040,685
INFO 2026-06-08 09:37:11 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:41s. Time for last 10,000,000: 17s. Last read position: chr8:143,866,298
INFO 2026-06-08 09:37:28 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 16s. Last read position: chr9:73,160,355
INFO 2026-06-08 09:37:45 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 16s. Last read position: chr9:130,494,981
INFO 2026-06-08 09:38:01 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 16s. Last read position: chr10:24,501,417
INFO 2026-06-08 09:38:18 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 16s. Last read position: chr10:101,003,785
INFO 2026-06-08 09:38:35 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 16s. Last read position: chr11:14,260,750
INFO 2026-06-08 09:38:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 16s. Last read position: chr11:64,766,036
INFO 2026-06-08 09:39:11 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 18s. Last read position: chr11:108,679,539
INFO 2026-06-08 09:39:28 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 16s. Last read position: chr12:7,062,477
INFO 2026-06-08 09:39:44 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 16s. Last read position: chr12:52,172,281
INFO 2026-06-08 09:40:01 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 16s. Last read position: chr12:57,173,235
INFO 2026-06-08 09:40:18 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 17s. Last read position: chr12:118,036,436
INFO 2026-06-08 09:40:35 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 16s. Last read position: chr13:77,326,613
INFO 2026-06-08 09:40:52 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 16s. Last read position: chr14:61,746,930
INFO 2026-06-08 09:41:08 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 16s. Last read position: chr14:104,947,073
INFO 2026-06-08 09:41:24 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 15s. Last read position: chr14:105,854,340
INFO 2026-06-08 09:41:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 17s. Last read position: chr15:66,500,158
INFO 2026-06-08 09:41:59 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 16s. Last read position: chr16:574,674
INFO 2026-06-08 09:42:15 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 16s. Last read position: chr16:21,404,943
INFO 2026-06-08 09:42:32 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 16s. Last read position: chr16:55,483,023
INFO 2026-06-08 09:42:50 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 17s. Last read position: chr16:88,721,318
INFO 2026-06-08 09:43:08 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:38s. Time for last 10,000,000: 17s. Last read position: chr17:17,512,601
INFO 2026-06-08 09:43:26 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:56s. Time for last 10,000,000: 18s. Last read position: chr17:41,619,548
INFO 2026-06-08 09:43:44 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:14s. Time for last 10,000,000: 17s. Last read position: chr17:50,189,402
INFO 2026-06-08 09:44:01 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 16s. Last read position: chr17:50,353,719
INFO 2026-06-08 09:44:18 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 16s. Last read position: chr17:81,665,505
INFO 2026-06-08 09:44:35 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 16s. Last read position: chr19:2,223,284
INFO 2026-06-08 09:44:52 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:21s. Time for last 10,000,000: 16s. Last read position: chr19:12,763,299
INFO 2026-06-08 09:45:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 17s. Last read position: chr19:17,862,976
INFO 2026-06-08 09:45:26 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 17s. Last read position: chr19:41,957,067
INFO 2026-06-08 09:45:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 17s. Last read position: chr19:54,180,885
INFO 2026-06-08 09:46:02 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 17s. Last read position: chr20:35,655,262
INFO 2026-06-08 09:46:18 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 16s. Last read position: chr21:8,258,912
INFO 2026-06-08 09:46:35 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 16s. Last read position: chr22:22,895,582
INFO 2026-06-08 09:46:52 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 17s. Last read position: chr22:41,178,528
INFO 2026-06-08 09:47:09 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:38s. Time for last 10,000,000: 16s. Last read position: chrX:49,034,192
INFO 2026-06-08 09:47:25 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:55s. Time for last 10,000,000: 16s. Last read position: chrX:154,399,489
INFO 2026-06-08 09:47:40 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:47:40 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:47:40 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:47:40 MarkDuplicates Before output close freeMemory: 203906584; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:47:40 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:47:40 MarkDuplicates After output close freeMemory: 104160808; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:47:40 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.99 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory