File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/04f5bf6591a2adb6b6630a6ce5b461/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00588_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/04f5bf6591a2adb6b6630a6ce5b461/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e1f3a1712b5090e567b0d600f63e33/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/04f5bf6591a2adb6b6630a6ce5b461/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/2b18b9be298aa465f59ec7788ec288/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 316932877
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316932877
Known Splicing Events:	311630203
Partial Novel Splicing Events:	1736152
Novel Splicing Events:	3467483
Filtered Splicing Events:	99039

Total splicing  Junctions:	587113
Known Splicing Junctions:	283359
Partial Novel Splicing Junctions:	174242
Novel Splicing Junctions:	129512

===================================================================
Create BED file ...
Create Interact file ...