File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/8f31d744164e98c7ddb01f3ebaa0b4/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (tih_rna_sample_00591_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/996d90ac2397899538ba8df0e98a98/tih_rna_sample_00591_B23MVV7LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/8f31d744164e98c7ddb01f3ebaa0b4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/8f31d744164e98c7ddb01f3ebaa0b4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3297b1cede6988e90785f53da6fcbe/tih_rna_sample_00591_B23MVV7LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: tih_rna_sample_00591_B23MVV7LT4_1/abundance.h5
Successfully converted tih_rna_sample_00591_B23MVV7LT4_1/abundance.h5 to tih_rna_sample_00591_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: tih_rna_sample_00591_B23MVV7LT4_1
  Mean Fragment Length: 126.0 bp
  Median Fragment Length: 116.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 1.482%
  pct_hk_est_counts: 0.704%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.016%
  pct_ribo_tpm: 4.129%
  pct_hk_tpm: 0.971%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.654%