File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/b3243848035d97c49e7d1e9dae62da/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00569_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/b3243848035d97c49e7d1e9dae62da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/9c03cd834a32611d3a32a307ada573/tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/3ec8b6fde5cd18064756b7562f795b/tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/b3243848035d97c49e7d1e9dae62da/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 330679984
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	330679984
Known Splicing Events:	325685222
Partial Novel Splicing Events:	1824434
Novel Splicing Events:	3038242
Filtered Splicing Events:	132086

Total splicing  Junctions:	640124
Known Splicing Junctions:	290362
Partial Novel Splicing Junctions:	187451
Novel Splicing Junctions:	162311

===================================================================
Create BED file ...
Create Interact file ...