File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/ad2959490cb81ba0a5b69904f97485/.command.log
Size
8.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00599_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/fffa20baf45a6fad1df23ccd2a9f1b/tih_rna_sample_00599_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/ad2959490cb81ba0a5b69904f97485/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/ad2959490cb81ba0a5b69904f97485/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/86b7b3c47be941bd270e159a744665/tih_rna_sample_00599_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
IARS1--GRHPR
starfusion
arriba
PARVA--BTNL8
starfusion
arriba
CDC123--MPP7
starfusion
arriba
NAA35--TMEM139
starfusion
arriba
ATP5F1C--DENND5A
starfusion
arriba
TMEM209--DENND1A
starfusion
arriba
AL162726.3--SVEP1
starfusion
arriba
TMEM38B--ZNF462
starfusion
arriba
CNTNAP2--GABRA5
starfusion
arriba
TMEM41B--NUCB2
starfusion
PHKB--MOSMO
starfusion
arriba
GRHPR--ZBTB34
starfusion
arriba
ZC3H3--MAPRE3
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
XYLT1--SLCO3A1
starfusion
arriba
TRERF1--C6orf132
starfusion
TBXAS1--LAMC3
starfusion
arriba
ZNF462--FAM120A
starfusion
arriba
PDCD6IP--ARPP21
starfusion
HTRA1--ABLIM1
starfusion
TMPO--APAF1
arriba
MRGPRX12P--CKAP5
arriba
RBM14--RBM4
arriba
NTM--AC142086.6
arriba
CERCAM--SEMA4D
arriba
ZNF783--ABBA01045074.1
arriba
ZNF783--BX088702.1
arriba
TVP23C--CDRT4
arriba
AC142086.6--MRGPRX12P
arriba
GSE1--CMIP
arriba
RBM4B--BICC1
arriba
WASH5P--DUX4L2
arriba
WASH5P--DUX4
arriba
ZNF419--ZNF772
arriba
CTNNBL1--BPIFB4
arriba
CTNNBL1--BPIFA2
arriba
PTK2--LINC01270
arriba
AC142086.6--AC090099.1
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing IARS1--GRHPR:   0%|          | 0/39 [00:00<?, ?it/s]
Processing IARS1--GRHPR:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]
Processing PARVA--BTNL8:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]
Processing PARVA--BTNL8:   5%|▌         | 2/39 [00:00<00:03,  9.47it/s]
Processing CDC123--MPP7:   5%|▌         | 2/39 [00:00<00:03,  9.47it/s]
Processing CDC123--MPP7:   8%|▊         | 3/39 [00:00<00:03,  9.55it/s]
Processing NAA35--TMEM139:   8%|▊         | 3/39 [00:00<00:03,  9.55it/s]
Processing NAA35--TMEM139:  10%|█         | 4/39 [00:00<00:03,  9.59it/s]
Processing ATP5F1C--DENND5A:  10%|█         | 4/39 [00:00<00:03,  9.59it/s]
Processing ATP5F1C--DENND5A:  13%|█▎        | 5/39 [00:00<00:03,  9.61it/s]
Processing TMEM209--DENND1A:  13%|█▎        | 5/39 [00:00<00:03,  9.61it/s]
Processing TMEM209--DENND1A:  15%|█▌        | 6/39 [00:00<00:03,  9.62it/s]
Processing AL162726.3--SVEP1:  15%|█▌        | 6/39 [00:00<00:03,  9.62it/s]
Processing AL162726.3--SVEP1:  18%|█▊        | 7/39 [00:00<00:03,  9.63it/s]
Processing TMEM38B--ZNF462:  18%|█▊        | 7/39 [00:00<00:03,  9.63it/s]  
Processing TMEM38B--ZNF462:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing CNTNAP2--GABRA5:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing CNTNAP2--GABRA5:  23%|██▎       | 9/39 [00:00<00:03,  9.64it/s]
Processing TMEM41B--NUCB2:  23%|██▎       | 9/39 [00:00<00:03,  9.64it/s] 
Processing TMEM41B--NUCB2:  26%|██▌       | 10/39 [00:01<00:03,  9.64it/s]
Processing PHKB--MOSMO:  26%|██▌       | 10/39 [00:01<00:03,  9.64it/s]   
Processing PHKB--MOSMO:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s]
Processing GRHPR--ZBTB34:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s]
Processing GRHPR--ZBTB34:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing ZC3H3--MAPRE3:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing ZC3H3--MAPRE3:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing STX16--NPEPL1:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing STX16--NPEPL1:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing XYLT1--SLCO3A1:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]    
Processing XYLT1--SLCO3A1:  41%|████      | 16/39 [00:01<00:02,  9.64it/s]
Processing TRERF1--C6orf132:  41%|████      | 16/39 [00:01<00:02,  9.64it/s]
Processing TRERF1--C6orf132:  44%|████▎     | 17/39 [00:01<00:02,  9.64it/s]
Processing TBXAS1--LAMC3:  44%|████▎     | 17/39 [00:01<00:02,  9.64it/s]   
Processing TBXAS1--LAMC3:  46%|████▌     | 18/39 [00:01<00:02,  9.64it/s]
Processing ZNF462--FAM120A:  46%|████▌     | 18/39 [00:01<00:02,  9.64it/s]
Processing ZNF462--FAM120A:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]
Processing PDCD6IP--ARPP21:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]
Processing PDCD6IP--ARPP21:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s]
Processing HTRA1--ABLIM1:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s]  
Processing HTRA1--ABLIM1:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]
Processing TMPO--APAF1:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]  
Processing TMPO--APAF1:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing MRGPRX12P--CKAP5:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing MRGPRX12P--CKAP5:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s]
Processing RBM14--RBM4:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s]     
Processing RBM14--RBM4:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]
Processing NTM--AC142086.6:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]
Processing NTM--AC142086.6:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing CERCAM--SEMA4D:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s] 
Processing CERCAM--SEMA4D:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing ZNF783--ABBA01045074.1:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing ZNF783--ABBA01045074.1:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]
Processing ZNF783--BX088702.1:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]    
Processing ZNF783--BX088702.1:  72%|███████▏  | 28/39 [00:02<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  72%|███████▏  | 28/39 [00:02<00:01,  9.64it/s]     
Processing TVP23C--CDRT4:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s]
Processing AC142086.6--MRGPRX12P:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s]
Processing AC142086.6--MRGPRX12P:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]
Processing GSE1--CMIP:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]           
Processing GSE1--CMIP:  79%|███████▉  | 31/39 [00:03<00:00,  9.64it/s]
Processing RBM4B--BICC1:  79%|███████▉  | 31/39 [00:03<00:00,  9.64it/s]
Processing RBM4B--BICC1:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]
Processing WASH5P--DUX4L2:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]
Processing WASH5P--DUX4L2:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing WASH5P--DUX4:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]  
Processing WASH5P--DUX4:  87%|████████▋ | 34/39 [00:03<00:00,  9.63it/s]
Processing ZNF419--ZNF772:  87%|████████▋ | 34/39 [00:03<00:00,  9.63it/s]
Processing ZNF419--ZNF772:  90%|████████▉ | 35/39 [00:03<00:00,  9.63it/s]
Processing CTNNBL1--BPIFB4:  90%|████████▉ | 35/39 [00:03<00:00,  9.63it/s]
Processing CTNNBL1--BPIFB4:  92%|█████████▏| 36/39 [00:03<00:00,  9.64it/s]
Processing CTNNBL1--BPIFA2:  92%|█████████▏| 36/39 [00:03<00:00,  9.64it/s]
Processing CTNNBL1--BPIFA2:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing PTK2--LINC01270:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing PTK2--LINC01270:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]
Processing AC142086.6--AC090099.1:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]
Processing AC142086.6--AC090099.1: 100%|██████████| 39/39 [00:04<00:00,  9.64it/s]
Processing AC142086.6--AC090099.1: 100%|██████████| 39/39 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory