File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/31f9c4a22e9e0af145fdb013ccc6da/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:51:01
                             Started mapping on |	Jun 08 08:57:42
                                    Finished on |	Jun 08 09:14:31
       Mapping speed, Million of reads per hour |	184.44

                          Number of input reads |	51694326
                      Average input read length |	203
                                    UNIQUE READS:
                   Uniquely mapped reads number |	48920222
                        Uniquely mapped reads % |	94.63%
                          Average mapped length |	202.51
                       Number of splices: Total |	35577344
            Number of splices: Annotated (sjdb) |	34816381
                       Number of splices: GT/AG |	34942640
                       Number of splices: GC/AG |	263437
                       Number of splices: AT/AC |	25678
               Number of splices: Non-canonical |	345589
                      Mismatch rate per base, % |	0.51%
                         Deletion rate per base |	0.06%
                        Deletion average length |	2.24
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.47
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1946825
             % of reads mapped to multiple loci |	3.77%
        Number of reads mapped to too many loci |	192316
             % of reads mapped to too many loci |	0.37%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	538162
                 % of reads unmapped: too short |	1.04%
                Number of reads unmapped: other |	96801
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%