File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/23090ab6529bdc16b7b3758a07c905/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:55:57
                             Started mapping on |	Jun 08 10:02:34
                                    Finished on |	Jun 08 11:23:49
       Mapping speed, Million of reads per hour |	214.57

                          Number of input reads |	290567314
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	277168428
                        Uniquely mapped reads % |	95.39%
                          Average mapped length |	244.98
                       Number of splices: Total |	306459517
            Number of splices: Annotated (sjdb) |	302275102
                       Number of splices: GT/AG |	302332600
                       Number of splices: GC/AG |	2189576
                       Number of splices: AT/AC |	229289
               Number of splices: Non-canonical |	1708052
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9634255
             % of reads mapped to multiple loci |	3.32%
        Number of reads mapped to too many loci |	888647
             % of reads mapped to too many loci |	0.31%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2508412
                 % of reads unmapped: too short |	0.86%
                Number of reads unmapped: other |	367572
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%