Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/9c47c4471684e6db2fdde129f40704/tih_rna_sample_00654_B23MVV7LT4_1.fusionreport.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/ca09e9012740fcf91faff1b5351e57/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/abc8c8d3c73dde9d55a9969b5f10ac/tih_rna_sample_00654_B23MVV7LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/abc8c8d3c73dde9d55a9969b5f10ac/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/ca09e9012740fcf91faff1b5351e57/.command.run
==> STAGING COMPLETE (6 inputs)

Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00654_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000 
Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00654_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fa
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf > /tmp/nxf.nLU2lRNXIN/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf > /tmp/nxf.nLU2lRNXIN/cytoBand.txt
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed
-parsing GTF file: /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00654_B23MVV7LT4_1.star --out_dir /tmp/nxf.nLU2lRNXIN/fi_workdir --reads "/tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
Jun 08 10:26:46 ..... started STAR run
Jun 08 10:26:46 ..... loading genome
Jun 08 10:28:26 ... generating Suffix Array index
Jun 08 10:32:14 ... completed Suffix Array index
Jun 08 10:32:14 ..... processing annotations GTF
Jun 08 10:32:14 ..... inserting junctions into the genome indices
Jun 08 10:33:15 ..... started mapping
Jun 08 11:29:49 ..... finished mapping
Jun 08 11:29:51 ..... started sorting BAM
Jun 08 11:29:51 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00654_B23MVV7LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00654_B23MVV7LT4_1.star.sortedByCoord.out.bam
Execution Time = 63.11 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00654_B23MVV7LT4_1.star --out_dir /tmp/nxf.nLU2lRNXIN/fi_workdir --reads "/tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
11:29:58 : INFO : Done.
Execution Time = 0.10 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.01 minutes. CMD: samtools index /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf
-parsing /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   
[390000]   
[400000]   
[410000]   
[420000]   
[430000]   
[440000]   
[450000]   
[460000]   
[470000]   
[480000]   
[490000]   
[500000]   
[510000]   
[520000]   
[530000]   
[540000]   
[550000]   
[560000]   
[570000]   
[580000]   
[590000]   
[600000]   
[610000]   
[620000]   
[630000]   
[640000]   
[650000]   
[660000]   
[670000]   
[680000]   
[690000]   
[700000]   
[710000]   
[720000]   
[730000]   
[740000]   
[750000]   
[760000]   
[770000]   
[780000]   
[790000]   
[800000]   
[810000]   
[820000]   
[830000]   
[840000]   
[850000]   
[860000]   
[870000]   
[880000]   
[890000]   
[900000]   
[910000]   
[920000]   
[930000]   
[940000]   
[950000]   
[960000]   
[970000]   
[980000]   
[990000]   
[1000000]   
[1010000]   
[1020000]   
[1030000]   
[1040000]   
[1050000]   
[1060000]   
[1070000]   
[1080000]   
[1090000]   
[1100000]   
[1110000]   
[1120000]   
[1130000]   
[1140000]   
[1150000]   -done parsing /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num genes matched < 2' => 1,
          'excessive soft clipping' => 5555,
          'low complexity anchor region' => 9,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 6,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 17,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 92,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 4,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 12,
          ' ** passed ** ' => 11544,
          'seq-similar region overlap' => 499,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 2,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 79,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 6,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 4,
          'per_id < 96' => 3106,
          'small anchor length' => 58
        };
-writing fusion junction support info.
Execution Time = 0.58 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: AC079781.4--ASNS

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: AL669831.1--SEPTIN14

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   -fusion SPANNING read extraction for scaff: DCAF8--LINC01720

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: SDHC--AL136456.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   -fusion SPANNING read extraction for scaff: STIM2--TBC1D19

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   -fusion SPANNING read extraction for scaff: TIMM23--PARGP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   -fusion SPANNING read extraction for scaff: TLK2--FAM157A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 105314,
          'lacks exon overlap' => 3115
        };
Execution Time = 1.30 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -5348.034698
EM: Round [1] log likelihood: -5344.605295
EM: Round [2] log likelihood: -5343.349171
EM: Round [3] log likelihood: -5342.407841
EM: Round [4] log likelihood: -5341.637854
EM: Round [5] log likelihood: -5340.973486
EM: Round [6] log likelihood: -5340.380464
EM: Round [7] log likelihood: -5339.839861
EM: Round [8] log likelihood: -5339.340643
EM: Round [9] log likelihood: -5338.875975
EM: Round [10] log likelihood: -5338.441321
EM: Round [11] log likelihood: -5338.033445
EM: Round [12] log likelihood: -5337.649867
EM: Round [13] log likelihood: -5337.288581
EM: Round [14] log likelihood: -5336.947883
EM: Round [15] log likelihood: -5336.626291
EM: Round [16] log likelihood: -5336.322478
EM: Round [17] log likelihood: -5336.035251
EM: Round [18] log likelihood: -5335.763521
EM: Round [19] log likelihood: -5335.506289
EM: Round [20] log likelihood: -5335.262639
EM: Round [21] log likelihood: -5335.031725
EM: Round [22] log likelihood: -5334.812766
EM: Round [23] log likelihood: -5334.605038
EM: Round [24] log likelihood: -5334.407869
EM: Round [25] log likelihood: -5334.220639
EM: Round [26] log likelihood: -5334.042766
EM: Round [27] log likelihood: -5333.873714
EM: Round [28] log likelihood: -5333.712979
EM: Round [29] log likelihood: -5333.560095
EM: Round [30] log likelihood: -5333.414624
EM: Round [31] log likelihood: -5333.276158
EM: Round [32] log likelihood: -5333.144315
EM: Round [33] log likelihood: -5333.018738
EM: Round [34] log likelihood: -5332.899092
EM: Round [35] log likelihood: -5332.785063
EM: Round [36] log likelihood: -5332.676357
EM: Round [37] log likelihood: -5332.572696
EM: Round [38] log likelihood: -5332.473822
EM: Round [39] log likelihood: -5332.379488
EM: Round [40] log likelihood: -5332.289465
EM: Round [41] log likelihood: -5332.203536
EM: Round [42] log likelihood: -5332.121496
EM: Round [43] log likelihood: -5332.043153
EM: Round [44] log likelihood: -5331.968324
EM: Round [45] log likelihood: -5331.896838
EM: Round [46] log likelihood: -5331.828532
EM: Round [47] log likelihood: -5331.763252
EM: Round [48] log likelihood: -5331.700854
EM: Round [49] log likelihood: -5331.641199
EM: Round [50] log likelihood: -5331.584158
EM: Round [51] log likelihood: -5331.529607
EM: Round [52] log likelihood: -5331.477429
EM: Round [53] log likelihood: -5331.427513
EM: Round [54] log likelihood: -5331.379755
EM: Round [55] log likelihood: -5331.334053
EM: Round [56] log likelihood: -5331.290314
EM: Round [57] log likelihood: -5331.248447
EM: Round [58] log likelihood: -5331.208367
EM: Round [59] log likelihood: -5331.169992
EM: Round [60] log likelihood: -5331.133245
EM: Round [61] log likelihood: -5331.098053
EM: Round [62] log likelihood: -5331.064345
EM: Round [63] log likelihood: -5331.032054
EM: Round [64] log likelihood: -5331.001118
EM: Round [65] log likelihood: -5330.971475
EM: Round [66] log likelihood: -5330.943069
EM: Round [67] log likelihood: -5330.915844
EM: Round [68] log likelihood: -5330.889748
EM: Round [69] log likelihood: -5330.864731
EM: Round [70] log likelihood: -5330.840746
EM: Round [71] log likelihood: -5330.817748
EM: Round [72] log likelihood: -5330.795692
EM: Round [73] log likelihood: -5330.774539
EM: Round [74] log likelihood: -5330.754247
EM: Round [75] log likelihood: -5330.734781
EM: Round [76] log likelihood: -5330.716104
EM: Round [77] log likelihood: -5330.698182
EM: Round [78] log likelihood: -5330.680981
EM: Round [79] log likelihood: -5330.664472
EM: Round [80] log likelihood: -5330.648623
EM: Round [81] log likelihood: -5330.633408
EM: Round [82] log likelihood: -5330.618797
EM: Round [83] log likelihood: -5330.604765
EM: Round [84] log likelihood: -5330.591288
EM: Round [85] log likelihood: -5330.578342
EM: Round [86] log likelihood: -5330.565903
EM: Round [87] log likelihood: -5330.553951
EM: Round [88] log likelihood: -5330.542464
EM: Round [89] log likelihood: -5330.531422
EM: Round [90] log likelihood: -5330.520807
EM: Round [91] log likelihood: -5330.510600
EM: Round [92] log likelihood: -5330.500785
EM: Round [93] log likelihood: -5330.491343
EM: Round [94] log likelihood: -5330.482260
EM: Round [95] log likelihood: -5330.473521
EM: Round [96] log likelihood: -5330.465110
EM: Round [97] log likelihood: -5330.457013
EM: Round [98] log likelihood: -5330.449219
EM: Round [99] log likelihood: -5330.441713
EM: Round [100] log likelihood: -5330.434483
EM: Round [101] log likelihood: -5330.427519
EM: Round [102] log likelihood: -5330.420808
EM: Round [103] log likelihood: -5330.414340
EM: Round [104] log likelihood: -5330.408105
EM: Round [105] log likelihood: -5330.402092
EM: Round [106] log likelihood: -5330.396294
EM: Round [107] log likelihood: -5330.390700
EM: Round [108] log likelihood: -5330.385302
EM: Round [109] log likelihood: -5330.380092
EM: Round [110] log likelihood: -5330.375062
EM: Round [111] log likelihood: -5330.370204
EM: Round [112] log likelihood: -5330.365512
EM: Round [113] log likelihood: -5330.360977
EM: Round [114] log likelihood: -5330.356595
EM: Round [115] log likelihood: -5330.352358
EM: Round [116] log likelihood: -5330.348260
EM: Round [117] log likelihood: -5330.344295
EM: Round [118] log likelihood: -5330.340459
EM: Round [119] log likelihood: -5330.336745
EM: Round [120] log likelihood: -5330.333148
EM: Round [121] log likelihood: -5330.329664
EM: Round [122] log likelihood: -5330.326289
EM: Round [123] log likelihood: -5330.323016
EM: Round [124] log likelihood: -5330.319843
EM: Round [125] log likelihood: -5330.316765
EM: Round [126] log likelihood: -5330.313778
EM: Round [127] log likelihood: -5330.310878
EM: Round [128] log likelihood: -5330.308062
EM: Round [129] log likelihood: -5330.305327
EM: Round [130] log likelihood: -5330.302668
EM: Round [131] log likelihood: -5330.300083
EM: Round [132] log likelihood: -5330.297569
EM: Round [133] log likelihood: -5330.295123
EM: Round [134] log likelihood: -5330.292742
EM: Round [135] log likelihood: -5330.290424
EM: Round [136] log likelihood: -5330.288165
EM: Round [137] log likelihood: -5330.285964
EM: Round [138] log likelihood: -5330.283818
EM: Round [139] log likelihood: -5330.281725
EM: Round [140] log likelihood: -5330.279683
EM: Round [141] log likelihood: -5330.277689
EM: Round [142] log likelihood: -5330.275742
EM: Round [143] log likelihood: -5330.273839
EM: Round [144] log likelihood: -5330.271980
EM: Round [145] log likelihood: -5330.270162
EM: Round [146] log likelihood: -5330.268383
EM: Round [147] log likelihood: -5330.266643
EM: Round [148] log likelihood: -5330.264939
EM: Round [149] log likelihood: -5330.263270
EM: Round [150] log likelihood: -5330.261634
EM: Round [151] log likelihood: -5330.260031
EM: Round [152] log likelihood: -5330.258459
EM: Round [153] log likelihood: -5330.256917
EM: Round [154] log likelihood: -5330.255403
EM: Round [155] log likelihood: -5330.253917
EM: Round [156] log likelihood: -5330.252457
EM: Round [157] log likelihood: -5330.251022
EM: Round [158] log likelihood: -5330.249612
EM: Round [159] log likelihood: -5330.248225
EM: Round [160] log likelihood: -5330.246861
EM: Round [161] log likelihood: -5330.245518
EM: Round [162] log likelihood: -5330.244196
EM: Round [163] log likelihood: -5330.242894
EM: Round [164] log likelihood: -5330.241611
EM: Round [165] log likelihood: -5330.240347
EM: Round [166] log likelihood: -5330.239100
EM: Round [167] log likelihood: -5330.237871
EM: Round [168] log likelihood: -5330.236658
EM: Round [169] log likelihood: -5330.235461
EM: Round [170] log likelihood: -5330.234279
EM: Round [171] log likelihood: -5330.233112
EM: Round [172] log likelihood: -5330.231959
EM: Round [173] log likelihood: -5330.230819
EM: Round [174] log likelihood: -5330.229693
EM: Round [175] log likelihood: -5330.228579
EM: Round [176] log likelihood: -5330.227478
EM: Round [177] log likelihood: -5330.226388
EM: Round [178] log likelihood: -5330.225309
EM: Round [179] log likelihood: -5330.224242
EM: Round [180] log likelihood: -5330.223184
EM: Round [181] log likelihood: -5330.222137
EM: Round [182] log likelihood: -5330.221100
EM: Round [183] log likelihood: -5330.220072
EM: Round [184] log likelihood: -5330.219054
EM: Round [185] log likelihood: -5330.218044
EM: Round [186] log likelihood: -5330.217043
EM: Round [187] log likelihood: -5330.216050
EM: Round [188] log likelihood: -5330.215064
EM: Round [189] log likelihood: -5330.214087
EM: Round [190] log likelihood: -5330.213117
EM: Round [191] log likelihood: -5330.212154
EM: Round [192] log likelihood: -5330.211198
EM: Round [193] log likelihood: -5330.210249
EM: Round [194] log likelihood: -5330.209306
EM: Round [195] log likelihood: -5330.208370
EM: Round [196] log likelihood: -5330.207439
EM: Round [197] log likelihood: -5330.206515
EM: Round [198] log likelihood: -5330.205597
EM: Round [199] log likelihood: -5330.204683
EM: Round [200] log likelihood: -5330.203776
EM: Round [201] log likelihood: -5330.202873
EM: Round [202] log likelihood: -5330.201976
EM: Round [203] log likelihood: -5330.201084
EM: Round [204] log likelihood: -5330.200196
EM: Round [205] log likelihood: -5330.199313
EM: Round [206] log likelihood: -5330.198435
EM: Round [207] log likelihood: -5330.197561
EM: Round [208] log likelihood: -5330.196691
EM: Round [209] log likelihood: -5330.195826
EM: Round [210] log likelihood: -5330.194964
EM: Round [211] log likelihood: -5330.194107
EM: Round [212] log likelihood: -5330.193253
EM: Round [213] log likelihood: -5330.192404
EM: Round [214] log likelihood: -5330.191557
EM: Round [215] log likelihood: -5330.190715
EM: Round [216] log likelihood: -5330.189876
EM: Round [217] log likelihood: -5330.189040
EM: Round [218] log likelihood: -5330.188208
EM: Round [219] log likelihood: -5330.187379
EM: Round [220] log likelihood: -5330.186553
EM: Round [221] log likelihood: -5330.185730
EM: Round [222] log likelihood: -5330.184911
EM: Round [223] log likelihood: -5330.184094
EM: Round [224] log likelihood: -5330.183280
EM: Round [225] log likelihood: -5330.182469
EM: Round [226] log likelihood: -5330.181661
EM: Round [227] log likelihood: -5330.180856
EM: Round [228] log likelihood: -5330.180053
EM: Round [229] log likelihood: -5330.179253
EM: Round [230] log likelihood: -5330.178456
EM: Round [231] log likelihood: -5330.177661
EM: Round [232] log likelihood: -5330.176869
EM: Round [233] log likelihood: -5330.176079
EM: Round [234] log likelihood: -5330.175292
EM: Round [235] log likelihood: -5330.174507
EM: Round [236] log likelihood: -5330.173724
EM: Round [237] log likelihood: -5330.172944
EM: Round [238] log likelihood: -5330.172166
EM: Round [239] log likelihood: -5330.171390
EM: Round [240] log likelihood: -5330.170616
EM: Round [241] log likelihood: -5330.169845
EM: Round [242] log likelihood: -5330.169076
EM: Round [243] log likelihood: -5330.168309
EM: Round [244] log likelihood: -5330.167543
EM: Round [245] log likelihood: -5330.166780
EM: Round [246] log likelihood: -5330.166019
EM: Round [247] log likelihood: -5330.165261
EM: Round [248] log likelihood: -5330.164504
EM: Round [249] log likelihood: -5330.163749
EM: Round [250] log likelihood: -5330.162995
EM: Round [251] log likelihood: -5330.162244
EM: Round [252] log likelihood: -5330.161495
EM: Round [253] log likelihood: -5330.160748
EM: Round [254] log likelihood: -5330.160002
EM: Round [255] log likelihood: -5330.159258
EM: Round [256] log likelihood: -5330.158516
EM: Round [257] log likelihood: -5330.157776
EM: Round [258] log likelihood: -5330.157038
EM: Round [259] log likelihood: -5330.156302
EM: Round [260] log likelihood: -5330.155567
EM: Round [261] log likelihood: -5330.154834
EM: Round [262] log likelihood: -5330.154102
EM: Round [263] log likelihood: -5330.153373
EM: Round [264] log likelihood: -5330.152645
EM: Round [265] log likelihood: -5330.151919
EM: Round [266] log likelihood: -5330.151194
EM: Round [267] log likelihood: -5330.150471
EM: Round [268] log likelihood: -5330.149750
EM: Round [269] log likelihood: -5330.149030
EM: Round [270] log likelihood: -5330.148312
EM: Round [271] log likelihood: -5330.147595
EM: Round [272] log likelihood: -5330.146881
EM: Round [273] log likelihood: -5330.146167
EM: Round [274] log likelihood: -5330.145456
EM: Round [275] log likelihood: -5330.144745
EM: Round [276] log likelihood: -5330.144037
EM: Round [277] log likelihood: -5330.143330
EM: Round [278] log likelihood: -5330.142624
EM: Round [279] log likelihood: -5330.141920
EM: Round [280] log likelihood: -5330.141218
EM: Round [281] log likelihood: -5330.140517
EM: Round [282] log likelihood: -5330.139817
EM: Round [283] log likelihood: -5330.139119
EM: Round [284] log likelihood: -5330.138423
EM: Round [285] log likelihood: -5330.137728
EM: Round [286] log likelihood: -5330.137034
EM: Round [287] log likelihood: -5330.136342
EM: Round [288] log likelihood: -5330.135651
EM: Round [289] log likelihood: -5330.134962
EM: Round [290] log likelihood: -5330.134274
EM: Round [291] log likelihood: -5330.133588
EM: Round [292] log likelihood: -5330.132903
EM: Round [293] log likelihood: -5330.132219
EM: Round [294] log likelihood: -5330.131537
EM: Round [295] log likelihood: -5330.130856
EM: Round [296] log likelihood: -5330.130177
EM: Round [297] log likelihood: -5330.129499
EM: Round [298] log likelihood: -5330.128822
EM: Round [299] log likelihood: -5330.128147
EM: Round [300] log likelihood: -5330.127474
EM: Round [301] log likelihood: -5330.126801
EM: Round [302] log likelihood: -5330.126130
EM: Round [303] log likelihood: -5330.125460
EM: Round [304] log likelihood: -5330.124792
EM: Round [305] log likelihood: -5330.124125
EM: Round [306] log likelihood: -5330.123459
EM: Round [307] log likelihood: -5330.122795
EM: Round [308] log likelihood: -5330.122132
EM: Round [309] log likelihood: -5330.121470
EM: Round [310] log likelihood: -5330.120810
EM: Round [311] log likelihood: -5330.120151
EM: Round [312] log likelihood: -5330.119493
EM: Round [313] log likelihood: -5330.118837
EM: Round [314] log likelihood: -5330.118182
EM: Round [315] log likelihood: -5330.117528
EM: Round [316] log likelihood: -5330.116875
EM: Round [317] log likelihood: -5330.116224
EM: Round [318] log likelihood: -5330.115574
EM: Round [319] log likelihood: -5330.114926
EM: Round [320] log likelihood: -5330.114278
EM: Round [321] log likelihood: -5330.113632
EM: Round [322] log likelihood: -5330.112987
EM: Round [323] log likelihood: -5330.112344
EM: Round [324] log likelihood: -5330.111702
EM: Round [325] log likelihood: -5330.111060
EM: Round [326] log likelihood: -5330.110421
EM: Round [327] log likelihood: -5330.109782
EM: Round [328] log likelihood: -5330.109145
EM: Round [329] log likelihood: -5330.108509
EM: Round [330] log likelihood: -5330.107874
EM: Round [331] log likelihood: -5330.107241
EM: Round [332] log likelihood: -5330.106608
EM: Round [333] log likelihood: -5330.105977
EM: Round [334] log likelihood: -5330.105347
EM: Round [335] log likelihood: -5330.104719
EM: Round [336] log likelihood: -5330.104091
EM: Round [337] log likelihood: -5330.103465
EM: Round [338] log likelihood: -5330.102840
EM: Round [339] log likelihood: -5330.102216
EM: Round [340] log likelihood: -5330.101594
EM: Round [341] log likelihood: -5330.100972
EM: Round [342] log likelihood: -5330.100352
EM: Round [343] log likelihood: -5330.099733
EM: Round [344] log likelihood: -5330.099115
EM: Round [345] log likelihood: -5330.098498
EM: Round [346] log likelihood: -5330.097883
EM: Round [347] log likelihood: -5330.097269
EM: Round [348] log likelihood: -5330.096656
EM: Round [349] log likelihood: -5330.096044
EM: Round [350] log likelihood: -5330.095433
EM: Round [351] log likelihood: -5330.094823
EM: Round [352] log likelihood: -5330.094215
EM: Round [353] log likelihood: -5330.093608
EM: Round [354] log likelihood: -5330.093002
EM: Round [355] log likelihood: -5330.092397
EM: Round [356] log likelihood: -5330.091793
EM: Round [357] log likelihood: -5330.091190
EM: Round [358] log likelihood: -5330.090589
EM: Round [359] log likelihood: -5330.089989
EM: Round [360] log likelihood: -5330.089389
EM: Round [361] log likelihood: -5330.088791
EM: Round [362] log likelihood: -5330.088194
EM: Round [363] log likelihood: -5330.087599
EM: Round [364] log likelihood: -5330.087004
EM: Round [365] log likelihood: -5330.086410
EM: Round [366] log likelihood: -5330.085818
EM: Round [367] log likelihood: -5330.085227
EM: Round [368] log likelihood: -5330.084636
EM: Round [369] log likelihood: -5330.084047
EM: Round [370] log likelihood: -5330.083459
EM: Round [371] log likelihood: -5330.082873
EM: Round [372] log likelihood: -5330.082287
EM: Round [373] log likelihood: -5330.081702
EM: Round [374] log likelihood: -5330.081119
EM: Round [375] log likelihood: -5330.080536
EM: Round [376] log likelihood: -5330.079955
EM: Round [377] log likelihood: -5330.079375
EM: Round [378] log likelihood: -5330.078795
EM: Round [379] log likelihood: -5330.078217
EM: Round [380] log likelihood: -5330.077640
EM: Round [381] log likelihood: -5330.077064
EM: Round [382] log likelihood: -5330.076490
EM: Round [383] log likelihood: -5330.075916
EM: Round [384] log likelihood: -5330.075343
EM: Round [385] log likelihood: -5330.074771
EM: Round [386] log likelihood: -5330.074201
EM: Round [387] log likelihood: -5330.073631
EM: Round [388] log likelihood: -5330.073063
EM: Round [389] log likelihood: -5330.072496
EM: Round [390] log likelihood: -5330.071929
EM: Round [391] log likelihood: -5330.071364
EM: Round [392] log likelihood: -5330.070800
EM: Round [393] log likelihood: -5330.070237
EM: Round [394] log likelihood: -5330.069675
EM: Round [395] log likelihood: -5330.069113
EM: Round [396] log likelihood: -5330.068553
EM: Round [397] log likelihood: -5330.067994
EM: Round [398] log likelihood: -5330.067436
EM: Round [399] log likelihood: -5330.066880
EM: Round [400] log likelihood: -5330.066324
EM: Round [401] log likelihood: -5330.065769
EM: Round [402] log likelihood: -5330.065215
EM: Round [403] log likelihood: -5330.064662
EM: Round [404] log likelihood: -5330.064110
EM: Round [405] log likelihood: -5330.063560
EM: Round [406] log likelihood: -5330.063010
EM: Round [407] log likelihood: -5330.062461
EM: Round [408] log likelihood: -5330.061913
EM: Round [409] log likelihood: -5330.061367
EM: Round [410] log likelihood: -5330.060821
EM: Round [411] log likelihood: -5330.060276
EM: Round [412] log likelihood: -5330.059732
EM: Round [413] log likelihood: -5330.059190
EM: Round [414] log likelihood: -5330.058648
EM: Round [415] log likelihood: -5330.058107
EM: Round [416] log likelihood: -5330.057568
EM: Round [417] log likelihood: -5330.057029
EM: Round [418] log likelihood: -5330.056491
EM: Round [419] log likelihood: -5330.055954
EM: Round [420] log likelihood: -5330.055418
EM: Round [421] log likelihood: -5330.054884
EM: Round [422] log likelihood: -5330.054350
EM: Round [423] log likelihood: -5330.053817
EM: Round [424] log likelihood: -5330.053285
EM: Round [425] log likelihood: -5330.052754
EM: Round [426] log likelihood: -5330.052224
EM: Round [427] log likelihood: -5330.051695
EM: Round [428] log likelihood: -5330.051167
EM: Round [429] log likelihood: -5330.050640
EM: Round [430] log likelihood: -5330.050114
EM: Round [431] log likelihood: -5330.049589
EM: Round [432] log likelihood: -5330.049065
EM: Round [433] log likelihood: -5330.048542
EM: Round [434] log likelihood: -5330.048019
EM: Round [435] log likelihood: -5330.047498
EM: Round [436] log likelihood: -5330.046978
EM: Round [437] log likelihood: -5330.046458
EM: Round [438] log likelihood: -5330.045940
EM: Round [439] log likelihood: -5330.045422
EM: Round [440] log likelihood: -5330.044905
EM: Round [441] log likelihood: -5330.044390
EM: Round [442] log likelihood: -5330.043875
EM: Round [443] log likelihood: -5330.043361
EM: Round [444] log likelihood: -5330.042848
EM: Round [445] log likelihood: -5330.042336
EM: Round [446] log likelihood: -5330.041825
EM: Round [447] log likelihood: -5330.041315
EM: Round [448] log likelihood: -5330.040806
EM: Round [449] log likelihood: -5330.040298
EM: Round [450] log likelihood: -5330.039790
EM: Round [451] log likelihood: -5330.039284
EM: Round [452] log likelihood: -5330.038778
EM: Round [453] log likelihood: -5330.038274
EM: Round [454] log likelihood: -5330.037770
EM: Round [455] log likelihood: -5330.037267
EM: Round [456] log likelihood: -5330.036765
EM: Round [457] log likelihood: -5330.036264
EM: Round [458] log likelihood: -5330.035764
EM: Round [459] log likelihood: -5330.035265
EM: Round [460] log likelihood: -5330.034767
EM: Round [461] log likelihood: -5330.034269
EM: Round [462] log likelihood: -5330.033773
EM: Round [463] log likelihood: -5330.033277
EM: Round [464] log likelihood: -5330.032782
EM: Round [465] log likelihood: -5330.032288
EM: Round [466] log likelihood: -5330.031795
EM: Round [467] log likelihood: -5330.031303
EM: Round [468] log likelihood: -5330.030812
EM: Round [469] log likelihood: -5330.030322
EM: Round [470] log likelihood: -5330.029832
EM: Round [471] log likelihood: -5330.029344
EM: Round [472] log likelihood: -5330.028856
EM: Round [473] log likelihood: -5330.028369
EM: Round [474] log likelihood: -5330.027883
EM: Round [475] log likelihood: -5330.027398
EM: Round [476] log likelihood: -5330.026913
EM: Round [477] log likelihood: -5330.026430
EM: Round [478] log likelihood: -5330.025947
EM: Round [479] log likelihood: -5330.025466
EM: Round [480] log likelihood: -5330.024985
EM: Round [481] log likelihood: -5330.024505
EM: Round [482] log likelihood: -5330.024026
EM: Round [483] log likelihood: -5330.023547
EM: Round [484] log likelihood: -5330.023070
EM: Round [485] log likelihood: -5330.022593
EM: Round [486] log likelihood: -5330.022118
EM: Round [487] log likelihood: -5330.021643
EM: Round [488] log likelihood: -5330.021169
EM: Round [489] log likelihood: -5330.020695
EM: Round [490] log likelihood: -5330.020223
EM: Round [491] log likelihood: -5330.019751
EM: Round [492] log likelihood: -5330.019281
EM: Round [493] log likelihood: -5330.018811
EM: Round [494] log likelihood: -5330.018342
EM: Round [495] log likelihood: -5330.017873
EM: Round [496] log likelihood: -5330.017406
EM: Round [497] log likelihood: -5330.016939
EM: Round [498] log likelihood: -5330.016474
EM: Round [499] log likelihood: -5330.016009
EM: Round [500] log likelihood: -5330.015544
EM: Round [501] log likelihood: -5330.015081
EM: Round [502] log likelihood: -5330.014619
EM: Round [503] log likelihood: -5330.014157
EM: Round [504] log likelihood: -5330.013696
EM: Round [505] log likelihood: -5330.013236
EM: Round [506] log likelihood: -5330.012777
EM: Round [507] log likelihood: -5330.012318
EM: Round [508] log likelihood: -5330.011860
EM: Round [509] log likelihood: -5330.011404
EM: Round [510] log likelihood: -5330.010947
EM: Round [511] log likelihood: -5330.010492
EM: Round [512] log likelihood: -5330.010038
EM: Round [513] log likelihood: -5330.009584
EM: Round [514] log likelihood: -5330.009131
EM: Round [515] log likelihood: -5330.008679
EM: Round [516] log likelihood: -5330.008228
EM: Round [517] log likelihood: -5330.007777
EM: Round [518] log likelihood: -5330.007327
EM: Round [519] log likelihood: -5330.006878
EM: Round [520] log likelihood: -5330.006430
EM: Round [521] log likelihood: -5330.005983
EM: Round [522] log likelihood: -5330.005536
EM: Round [523] log likelihood: -5330.005090
EM: Round [524] log likelihood: -5330.004645
EM: Round [525] log likelihood: -5330.004201
EM: Round [526] log likelihood: -5330.003758
EM: Round [527] log likelihood: -5330.003315
EM: Round [528] log likelihood: -5330.002873
EM: Round [529] log likelihood: -5330.002432
EM: Round [530] log likelihood: -5330.001991
EM: Round [531] log likelihood: -5330.001551
EM: Round [532] log likelihood: -5330.001112
EM: Round [533] log likelihood: -5330.000674
EM: Round [534] log likelihood: -5330.000237
EM: Round [535] log likelihood: -5329.999800
EM: Round [536] log likelihood: -5329.999364
EM: Round [537] log likelihood: -5329.998929
EM: Round [538] log likelihood: -5329.998495
EM: Round [539] log likelihood: -5329.998061
EM: Round [540] log likelihood: -5329.997628
EM: Round [541] log likelihood: -5329.997196
EM: Round [542] log likelihood: -5329.996765
EM: Round [543] log likelihood: -5329.996334
EM: Round [544] log likelihood: -5329.995904
EM: Round [545] log likelihood: -5329.995475
EM: Round [546] log likelihood: -5329.995047
EM: Round [547] log likelihood: -5329.994619
EM: Round [548] log likelihood: -5329.994192
EM: Round [549] log likelihood: -5329.993766
EM: Round [550] log likelihood: -5329.993340
EM: Round [551] log likelihood: -5329.992915
EM: Round [552] log likelihood: -5329.992491
EM: Round [553] log likelihood: -5329.992068
EM: Round [554] log likelihood: -5329.991645
EM: Round [555] log likelihood: -5329.991224
EM: Round [556] log likelihood: -5329.990803
EM: Round [557] log likelihood: -5329.990382
EM: Round [558] log likelihood: -5329.989962
EM: Round [559] log likelihood: -5329.989543
EM: Round [560] log likelihood: -5329.989125
EM: Round [561] log likelihood: -5329.988708
EM: Round [562] log likelihood: -5329.988291
EM: Round [563] log likelihood: -5329.987875
EM: Round [564] log likelihood: -5329.987459
EM: Round [565] log likelihood: -5329.987045
EM: Round [566] log likelihood: -5329.986631
EM: Round [567] log likelihood: -5329.986217
EM: Round [568] log likelihood: -5329.985805
EM: Round [569] log likelihood: -5329.985393
EM: Round [570] log likelihood: -5329.984982
EM: Round [571] log likelihood: -5329.984571
EM: Round [572] log likelihood: -5329.984162
EM: Round [573] log likelihood: -5329.983752
EM: Round [574] log likelihood: -5329.983344
EM: Round [575] log likelihood: -5329.982936
EM: Round [576] log likelihood: -5329.982529
EM: Round [577] log likelihood: -5329.982123
EM: Round [578] log likelihood: -5329.981718
EM: Round [579] log likelihood: -5329.981313
EM: Round [580] log likelihood: -5329.980908
EM: Round [581] log likelihood: -5329.980505
EM: Round [582] log likelihood: -5329.980102
EM: Round [583] log likelihood: -5329.979700
EM: Round [584] log likelihood: -5329.979298
EM: Round [585] log likelihood: -5329.978898
EM: Round [586] log likelihood: -5329.978497
EM: Round [587] log likelihood: -5329.978098
EM: Round [588] log likelihood: -5329.977699
EM: Round [589] log likelihood: -5329.977301
EM: Round [590] log likelihood: -5329.976904
EM: Round [591] log likelihood: -5329.976507
EM: Round [592] log likelihood: -5329.976111
EM: Round [593] log likelihood: -5329.975715
EM: Round [594] log likelihood: -5329.975321
EM: Round [595] log likelihood: -5329.974927
EM: Round [596] log likelihood: -5329.974533
EM: Round [597] log likelihood: -5329.974140
EM: Round [598] log likelihood: -5329.973748
EM: Round [599] log likelihood: -5329.973357
EM: Round [600] log likelihood: -5329.972966
EM: Round [601] log likelihood: -5329.972576
EM: Round [602] log likelihood: -5329.972186
EM: Round [603] log likelihood: -5329.971798
EM: Round [604] log likelihood: -5329.971409
EM: Round [605] log likelihood: -5329.971022
EM: Round [606] log likelihood: -5329.970635
EM: Round [607] log likelihood: -5329.970249
EM: Round [608] log likelihood: -5329.969863
EM: Round [609] log likelihood: -5329.969478
EM: Round [610] log likelihood: -5329.969094
EM: Round [611] log likelihood: -5329.968711
EM: Round [612] log likelihood: -5329.968328
EM: Round [613] log likelihood: -5329.967945
EM: Round [614] log likelihood: -5329.967564
EM: Round [615] log likelihood: -5329.967183
EM: Round [616] log likelihood: -5329.966802
EM: Round [617] log likelihood: -5329.966422
EM: Round [618] log likelihood: -5329.966043
EM: Round [619] log likelihood: -5329.965665
EM: Round [620] log likelihood: -5329.965287
EM: Round [621] log likelihood: -5329.964910
EM: Round [622] log likelihood: -5329.964533
EM: Round [623] log likelihood: -5329.964157
EM: Round [624] log likelihood: -5329.963782
EM: Round [625] log likelihood: -5329.963407
EM: Round [626] log likelihood: -5329.963033
EM: Round [627] log likelihood: -5329.962659
EM: Round [628] log likelihood: -5329.962286
EM: Round [629] log likelihood: -5329.961914
EM: Round [630] log likelihood: -5329.961543
EM: Round [631] log likelihood: -5329.961172
EM: Round [632] log likelihood: -5329.960801
EM: Round [633] log likelihood: -5329.960431
EM: Round [634] log likelihood: -5329.960062
EM: Round [635] log likelihood: -5329.959694
EM: Round [636] log likelihood: -5329.959326
EM: Round [637] log likelihood: -5329.958959
EM: Round [638] log likelihood: -5329.958592
EM: Round [639] log likelihood: -5329.958226
EM: Round [640] log likelihood: -5329.957860
EM: Round [641] log likelihood: -5329.957495
EM: Round [642] log likelihood: -5329.957131
EM: Round [643] log likelihood: -5329.956767
EM: Round [644] log likelihood: -5329.956404
EM: Round [645] log likelihood: -5329.956042
EM: Round [646] log likelihood: -5329.955680
EM: Round [647] log likelihood: -5329.955319
EM: Round [648] log likelihood: -5329.954958
EM: Round [649] log likelihood: -5329.954598
EM: Round [650] log likelihood: -5329.954238
EM: Round [651] log likelihood: -5329.953880
EM: Round [652] log likelihood: -5329.953521
EM: Round [653] log likelihood: -5329.953164
EM: Round [654] log likelihood: -5329.952806
EM: Round [655] log likelihood: -5329.952450
EM: Round [656] log likelihood: -5329.952094
EM: Round [657] log likelihood: -5329.951739
EM: Round [658] log likelihood: -5329.951384
EM: Round [659] log likelihood: -5329.951030
EM: Round [660] log likelihood: -5329.950676
EM: Round [661] log likelihood: -5329.950323
EM: Round [662] log likelihood: -5329.949971
EM: Round [663] log likelihood: -5329.949619
EM: Round [664] log likelihood: -5329.949267
EM: Round [665] log likelihood: -5329.948917
EM: Round [666] log likelihood: -5329.948567
EM: Round [667] log likelihood: -5329.948217
EM: Round [668] log likelihood: -5329.947868
EM: Round [669] log likelihood: -5329.947520
EM: Round [670] log likelihood: -5329.947172
EM: Round [671] log likelihood: -5329.946825
EM: Round [672] log likelihood: -5329.946478
EM: Round [673] log likelihood: -5329.946132
EM: Round [674] log likelihood: -5329.945786
EM: Round [675] log likelihood: -5329.945441
EM: Round [676] log likelihood: -5329.945097
EM: Round [677] log likelihood: -5329.944753
EM: Round [678] log likelihood: -5329.944410
EM: Round [679] log likelihood: -5329.944067
EM: Round [680] log likelihood: -5329.943725
EM: Round [681] log likelihood: -5329.943383
EM: Round [682] log likelihood: -5329.943042
EM: Round [683] log likelihood: -5329.942702
EM: Round [684] log likelihood: -5329.942362
EM: Round [685] log likelihood: -5329.942022
EM: Round [686] log likelihood: -5329.941683
EM: Round [687] log likelihood: -5329.941345
EM: Round [688] log likelihood: -5329.941007
EM: Round [689] log likelihood: -5329.940670
EM: Round [690] log likelihood: -5329.940334
EM: Round [691] log likelihood: -5329.939998
EM: Round [692] log likelihood: -5329.939662
EM: Round [693] log likelihood: -5329.939327
EM: Round [694] log likelihood: -5329.938993
EM: Round [695] log likelihood: -5329.938659
EM: Round [696] log likelihood: -5329.938325
EM: Round [697] log likelihood: -5329.937992
EM: Round [698] log likelihood: -5329.937660
EM: Round [699] log likelihood: -5329.937328
EM: Round [700] log likelihood: -5329.936997
EM: Round [701] log likelihood: -5329.936667
EM: Round [702] log likelihood: -5329.936336
EM: Round [703] log likelihood: -5329.936007
EM: Round [704] log likelihood: -5329.935678
EM: Round [705] log likelihood: -5329.935349
EM: Round [706] log likelihood: -5329.935021
EM: Round [707] log likelihood: -5329.934694
EM: Round [708] log likelihood: -5329.934367
EM: Round [709] log likelihood: -5329.934041
EM: Round [710] log likelihood: -5329.933715
EM: Round [711] log likelihood: -5329.933389
EM: Round [712] log likelihood: -5329.933065
EM: Round [713] log likelihood: -5329.932740
EM: Round [714] log likelihood: -5329.932417
EM: Round [715] log likelihood: -5329.932093
EM: Round [716] log likelihood: -5329.931771
EM: Round [717] log likelihood: -5329.931448
EM: Round [718] log likelihood: -5329.931127
EM: Round [719] log likelihood: -5329.930806
EM: Round [720] log likelihood: -5329.930485
EM: Round [721] log likelihood: -5329.930165
EM: Round [722] log likelihood: -5329.929845
EM: Round [723] log likelihood: -5329.929526
EM: Round [724] log likelihood: -5329.929208
EM: Round [725] log likelihood: -5329.928889
EM: Round [726] log likelihood: -5329.928572
EM: Round [727] log likelihood: -5329.928255
EM: Round [728] log likelihood: -5329.927938
EM: Round [729] log likelihood: -5329.927622
EM: Round [730] log likelihood: -5329.927307
EM: Round [731] log likelihood: -5329.926992
EM: Round [732] log likelihood: -5329.926677
EM: Round [733] log likelihood: -5329.926363
EM: Round [734] log likelihood: -5329.926050
EM: Round [735] log likelihood: -5329.925737
EM: Round [736] log likelihood: -5329.925424
EM: Round [737] log likelihood: -5329.925112
EM: Round [738] log likelihood: -5329.924801
EM: Round [739] log likelihood: -5329.924490
EM: Round [740] log likelihood: -5329.924179
EM: Round [741] log likelihood: -5329.923870
EM: Round [742] log likelihood: -5329.923560
EM: Round [743] log likelihood: -5329.923251
EM: Round [744] log likelihood: -5329.922943
EM: Round [745] log likelihood: -5329.922635
EM: Round [746] log likelihood: -5329.922327
EM: Round [747] log likelihood: -5329.922020
EM: Round [748] log likelihood: -5329.921713
EM: Round [749] log likelihood: -5329.921407
EM: Round [750] log likelihood: -5329.921102
EM: Round [751] log likelihood: -5329.920797
EM: Round [752] log likelihood: -5329.920492
EM: Round [753] log likelihood: -5329.920188
EM: Round [754] log likelihood: -5329.919885
EM: Round [755] log likelihood: -5329.919581
EM: Round [756] log likelihood: -5329.919279
EM: Round [757] log likelihood: -5329.918977
EM: Round [758] log likelihood: -5329.918675
EM: Round [759] log likelihood: -5329.918374
EM: Round [760] log likelihood: -5329.918073
EM: Round [761] log likelihood: -5329.917773
EM: Round [762] log likelihood: -5329.917473
EM: Round [763] log likelihood: -5329.917174
EM: Round [764] log likelihood: -5329.916875
EM: Round [765] log likelihood: -5329.916577
EM: Round [766] log likelihood: -5329.916279
EM: Round [767] log likelihood: -5329.915982
EM: Round [768] log likelihood: -5329.915685
EM: Round [769] log likelihood: -5329.915388
EM: Round [770] log likelihood: -5329.915092
EM: Round [771] log likelihood: -5329.914797
EM: Round [772] log likelihood: -5329.914502
EM: Round [773] log likelihood: -5329.914207
EM: Round [774] log likelihood: -5329.913913
EM: Round [775] log likelihood: -5329.913620
EM: Round [776] log likelihood: -5329.913326
EM: Round [777] log likelihood: -5329.913034
EM: Round [778] log likelihood: -5329.912742
EM: Round [779] log likelihood: -5329.912450
EM: Round [780] log likelihood: -5329.912159
EM: Round [781] log likelihood: -5329.911868
EM: Round [782] log likelihood: -5329.911577
EM: Round [783] log likelihood: -5329.911287
EM: Round [784] log likelihood: -5329.910998
EM: Round [785] log likelihood: -5329.910709
EM: Round [786] log likelihood: -5329.910420
EM: Round [787] log likelihood: -5329.910132
EM: Round [788] log likelihood: -5329.909845
EM: Round [789] log likelihood: -5329.909558
EM: Round [790] log likelihood: -5329.909271
EM: Round [791] log likelihood: -5329.908985
EM: Round [792] log likelihood: -5329.908699
EM: Round [793] log likelihood: -5329.908413
EM: Round [794] log likelihood: -5329.908129
EM: Round [795] log likelihood: -5329.907844
EM: Round [796] log likelihood: -5329.907560
EM: Round [797] log likelihood: -5329.907276
EM: Round [798] log likelihood: -5329.906993
EM: Round [799] log likelihood: -5329.906711
EM: Round [800] log likelihood: -5329.906428
EM: Round [801] log likelihood: -5329.906147
EM: Round [802] log likelihood: -5329.905865
EM: Round [803] log likelihood: -5329.905584
EM: Round [804] log likelihood: -5329.905304
EM: Round [805] log likelihood: -5329.905024
EM: Round [806] log likelihood: -5329.904744
EM: Round [807] log likelihood: -5329.904465
EM: Round [808] log likelihood: -5329.904187
EM: Round [809] log likelihood: -5329.903908
EM: Round [810] log likelihood: -5329.903631
EM: Round [811] log likelihood: -5329.903353
EM: Round [812] log likelihood: -5329.903076
EM: Round [813] log likelihood: -5329.902800
EM: Round [814] log likelihood: -5329.902524
EM: Round [815] log likelihood: -5329.902248
EM: Round [816] log likelihood: -5329.901973
EM: Round [817] log likelihood: -5329.901698
EM: Round [818] log likelihood: -5329.901424
EM: Round [819] log likelihood: -5329.901150
EM: Round [820] log likelihood: -5329.900876
EM: Round [821] log likelihood: -5329.900603
EM: Round [822] log likelihood: -5329.900330
EM: Round [823] log likelihood: -5329.900058
EM: Round [824] log likelihood: -5329.899787
EM: Round [825] log likelihood: -5329.899515
EM: Round [826] log likelihood: -5329.899244
EM: Round [827] log likelihood: -5329.898974
EM: Round [828] log likelihood: -5329.898704
EM: Round [829] log likelihood: -5329.898434
EM: Round [830] log likelihood: -5329.898165
EM: Round [831] log likelihood: -5329.897896
EM: Round [832] log likelihood: -5329.897627
EM: Round [833] log likelihood: -5329.897359
EM: Round [834] log likelihood: -5329.897092
EM: Round [835] log likelihood: -5329.896825
EM: Round [836] log likelihood: -5329.896558
EM: Round [837] log likelihood: -5329.896292
EM: Round [838] log likelihood: -5329.896026
EM: Round [839] log likelihood: -5329.895760
EM: Round [840] log likelihood: -5329.895495
EM: Round [841] log likelihood: -5329.895231
EM: Round [842] log likelihood: -5329.894966
EM: Round [843] log likelihood: -5329.894703
EM: Round [844] log likelihood: -5329.894439
EM: Round [845] log likelihood: -5329.894176
EM: Round [846] log likelihood: -5329.893913
EM: Round [847] log likelihood: -5329.893651
EM: Round [848] log likelihood: -5329.893389
EM: Round [849] log likelihood: -5329.893128
EM: Round [850] log likelihood: -5329.892867
EM: Round [851] log likelihood: -5329.892607
EM: Round [852] log likelihood: -5329.892346
EM: Round [853] log likelihood: -5329.892087
EM: Round [854] log likelihood: -5329.891827
EM: Round [855] log likelihood: -5329.891568
EM: Round [856] log likelihood: -5329.891310
EM: Round [857] log likelihood: -5329.891052
EM: Round [858] log likelihood: -5329.890794
EM: Round [859] log likelihood: -5329.890536
EM: Round [860] log likelihood: -5329.890280
EM: Round [861] log likelihood: -5329.890023
EM: Round [862] log likelihood: -5329.889767
EM: Round [863] log likelihood: -5329.889511
EM: Round [864] log likelihood: -5329.889256
EM: Round [865] log likelihood: -5329.889001
EM: Round [866] log likelihood: -5329.888746
EM: Round [867] log likelihood: -5329.888492
EM: Round [868] log likelihood: -5329.888238
EM: Round [869] log likelihood: -5329.887985
EM: Round [870] log likelihood: -5329.887732
EM: Round [871] log likelihood: -5329.887479
EM: Round [872] log likelihood: -5329.887227
EM: Round [873] log likelihood: -5329.886975
EM: Round [874] log likelihood: -5329.886724
EM: Round [875] log likelihood: -5329.886473
EM: Round [876] log likelihood: -5329.886222
EM: Round [877] log likelihood: -5329.885972
EM: Round [878] log likelihood: -5329.885722
EM: Round [879] log likelihood: -5329.885472
EM: Round [880] log likelihood: -5329.885223
EM: Round [881] log likelihood: -5329.884974
EM: Round [882] log likelihood: -5329.884726
EM: Round [883] log likelihood: -5329.884478
EM: Round [884] log likelihood: -5329.884230
EM: Round [885] log likelihood: -5329.883983
EM: Round [886] log likelihood: -5329.883736
EM: Round [887] log likelihood: -5329.883490
EM: Round [888] log likelihood: -5329.883244
EM: Round [889] log likelihood: -5329.882998
EM: Round [890] log likelihood: -5329.882753
EM: Round [891] log likelihood: -5329.882508
EM: Round [892] log likelihood: -5329.882263
EM: Round [893] log likelihood: -5329.882019
EM: Round [894] log likelihood: -5329.881775
EM: Round [895] log likelihood: -5329.881532
EM: Round [896] log likelihood: -5329.881289
EM: Round [897] log likelihood: -5329.881046
EM: Round [898] log likelihood: -5329.880804
EM: Round [899] log likelihood: -5329.880562
EM: Round [900] log likelihood: -5329.880320
EM: Round [901] log likelihood: -5329.880079
EM: Round [902] log likelihood: -5329.879838
EM: Round [903] log likelihood: -5329.879598
EM: Round [904] log likelihood: -5329.879358
EM: Round [905] log likelihood: -5329.879118
EM: Round [906] log likelihood: -5329.878879
EM: Round [907] log likelihood: -5329.878640
EM: Round [908] log likelihood: -5329.878401
EM: Round [909] log likelihood: -5329.878163
EM: Round [910] log likelihood: -5329.877925
EM: Round [911] log likelihood: -5329.877687
EM: Round [912] log likelihood: -5329.877450
EM: Round [913] log likelihood: -5329.877213
EM: Round [914] log likelihood: -5329.876977
EM: Round [915] log likelihood: -5329.876741
EM: Round [916] log likelihood: -5329.876505
EM: Round [917] log likelihood: -5329.876270
EM: Round [918] log likelihood: -5329.876035
EM: Round [919] log likelihood: -5329.875800
EM: Round [920] log likelihood: -5329.875566
EM: Round [921] log likelihood: -5329.875332
EM: Round [922] log likelihood: -5329.875098
EM: Round [923] log likelihood: -5329.874865
EM: Round [924] log likelihood: -5329.874632
EM: Round [925] log likelihood: -5329.874400
EM: Round [926] log likelihood: -5329.874167
EM: Round [927] log likelihood: -5329.873936
EM: Round [928] log likelihood: -5329.873704
EM: Round [929] log likelihood: -5329.873473
EM: Round [930] log likelihood: -5329.873242
EM: Round [931] log likelihood: -5329.873012
EM: Round [932] log likelihood: -5329.872782
EM: Round [933] log likelihood: -5329.872552
EM: Round [934] log likelihood: -5329.872323
EM: Round [935] log likelihood: -5329.872094
EM: Round [936] log likelihood: -5329.871865
EM: Round [937] log likelihood: -5329.871637
EM: Round [938] log likelihood: -5329.871409
EM: Round [939] log likelihood: -5329.871181
EM: Round [940] log likelihood: -5329.870954
EM: Round [941] log likelihood: -5329.870727
EM: Round [942] log likelihood: -5329.870501
EM: Round [943] log likelihood: -5329.870275
EM: Round [944] log likelihood: -5329.870049
EM: Round [945] log likelihood: -5329.869823
EM: Round [946] log likelihood: -5329.869598
EM: Round [947] log likelihood: -5329.869373
EM: Round [948] log likelihood: -5329.869149
EM: Round [949] log likelihood: -5329.868924
EM: Round [950] log likelihood: -5329.868701
EM: Round [951] log likelihood: -5329.868477
EM: Round [952] log likelihood: -5329.868254
EM: Round [953] log likelihood: -5329.868031
EM: Round [954] log likelihood: -5329.867809
EM: Round [955] log likelihood: -5329.867587
EM: Round [956] log likelihood: -5329.867365
EM: Round [957] log likelihood: -5329.867143
EM: Round [958] log likelihood: -5329.866922
EM: Round [959] log likelihood: -5329.866701
EM: Round [960] log likelihood: -5329.866481
EM: Round [961] log likelihood: -5329.866261
EM: Round [962] log likelihood: -5329.866041
EM: Round [963] log likelihood: -5329.865822
EM: Round [964] log likelihood: -5329.865602
EM: Round [965] log likelihood: -5329.865384
EM: Round [966] log likelihood: -5329.865165
EM: Round [967] log likelihood: -5329.864947
EM: Round [968] log likelihood: -5329.864729
EM: Round [969] log likelihood: -5329.864512
EM: Round [970] log likelihood: -5329.864295
EM: Round [971] log likelihood: -5329.864078
EM: Round [972] log likelihood: -5329.863861
EM: Round [973] log likelihood: -5329.863645
EM: Round [974] log likelihood: -5329.863429
EM: Round [975] log likelihood: -5329.863214
EM: Round [976] log likelihood: -5329.862999
EM: Round [977] log likelihood: -5329.862784
EM: Round [978] log likelihood: -5329.862569
EM: Round [979] log likelihood: -5329.862355
EM: Round [980] log likelihood: -5329.862141
EM: Round [981] log likelihood: -5329.861928
EM: Round [982] log likelihood: -5329.861714
EM: Round [983] log likelihood: -5329.861501
EM: Round [984] log likelihood: -5329.861289
EM: Round [985] log likelihood: -5329.861076
EM: Round [986] log likelihood: -5329.860864
EM: Round [987] log likelihood: -5329.860653
EM: Round [988] log likelihood: -5329.860441
EM: Round [989] log likelihood: -5329.860230
EM: Round [990] log likelihood: -5329.860020
EM: Round [991] log likelihood: -5329.859809
EM: Round [992] log likelihood: -5329.859599
EM: Round [993] log likelihood: -5329.859390
EM: Round [994] log likelihood: -5329.859180
EM: Round [995] log likelihood: -5329.858971
EM: Round [996] log likelihood: -5329.858762
EM: Round [997] log likelihood: -5329.858554
EM: Round [998] log likelihood: -5329.858346
EM: Round [999] log likelihood: -5329.858138
EM: Round [1000] log likelihood: -5329.857930
EM: Round [1001] log likelihood: -5329.857723
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam"
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam || : 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam || : 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/tih_rna_sample_00654_B23MVV7LT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam
Execution Time = 0.01 minutes. CMD: samtools index /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000 
-extracting read coordinates from /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam into /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.read_coords > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.28 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.FusionJuncSpan
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.gff3 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.gff3 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa > /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.nLU2lRNXIN/fi_workdir/tih_rna_sample_00654_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir
-done, see /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -4566.253543
EM: Round [1] log likelihood: -4564.890775
EM: Round [2] log likelihood: -4564.882042
EM: Round [3] log likelihood: -4564.880725
EM: Round [4] log likelihood: -4564.879446
EM: Round [5] log likelihood: -4564.878170
EM: Round [6] log likelihood: -4564.876898
EM: Round [7] log likelihood: -4564.875629
EM: Round [8] log likelihood: -4564.874363
EM: Round [9] log likelihood: -4564.873101
EM: Round [10] log likelihood: -4564.871842
EM: Round [11] log likelihood: -4564.870585
EM: Round [12] log likelihood: -4564.869333
EM: Round [13] log likelihood: -4564.868083
EM: Round [14] log likelihood: -4564.866836
EM: Round [15] log likelihood: -4564.865593
EM: Round [16] log likelihood: -4564.864353
EM: Round [17] log likelihood: -4564.863116
EM: Round [18] log likelihood: -4564.861882
EM: Round [19] log likelihood: -4564.860651
EM: Round [20] log likelihood: -4564.859423
EM: Round [21] log likelihood: -4564.858198
EM: Round [22] log likelihood: -4564.856977
EM: Round [23] log likelihood: -4564.855758
EM: Round [24] log likelihood: -4564.854543
EM: Round [25] log likelihood: -4564.853330
EM: Round [26] log likelihood: -4564.852121
EM: Round [27] log likelihood: -4564.850915
EM: Round [28] log likelihood: -4564.849711
EM: Round [29] log likelihood: -4564.848511
EM: Round [30] log likelihood: -4564.847314
EM: Round [31] log likelihood: -4564.846119
EM: Round [32] log likelihood: -4564.844928
EM: Round [33] log likelihood: -4564.843739
EM: Round [34] log likelihood: -4564.842554
EM: Round [35] log likelihood: -4564.841371
EM: Round [36] log likelihood: -4564.840192
EM: Round [37] log likelihood: -4564.839015
EM: Round [38] log likelihood: -4564.837841
EM: Round [39] log likelihood: -4564.836670
EM: Round [40] log likelihood: -4564.835502
EM: Round [41] log likelihood: -4564.834337
EM: Round [42] log likelihood: -4564.833174
EM: Round [43] log likelihood: -4564.832015
EM: Round [44] log likelihood: -4564.830858
EM: Round [45] log likelihood: -4564.829705
EM: Round [46] log likelihood: -4564.828554
EM: Round [47] log likelihood: -4564.827405
EM: Round [48] log likelihood: -4564.826260
EM: Round [49] log likelihood: -4564.825117
EM: Round [50] log likelihood: -4564.823977
EM: Round [51] log likelihood: -4564.822840
EM: Round [52] log likelihood: -4564.821706
EM: Round [53] log likelihood: -4564.820575
EM: Round [54] log likelihood: -4564.819446
EM: Round [55] log likelihood: -4564.818320
EM: Round [56] log likelihood: -4564.817196
EM: Round [57] log likelihood: -4564.816076
EM: Round [58] log likelihood: -4564.814958
EM: Round [59] log likelihood: -4564.813842
EM: Round [60] log likelihood: -4564.812730
EM: Round [61] log likelihood: -4564.811620
EM: Round [62] log likelihood: -4564.810513
EM: Round [63] log likelihood: -4564.809408
EM: Round [64] log likelihood: -4564.808306
EM: Round [65] log likelihood: -4564.807207
EM: Round [66] log likelihood: -4564.806110
EM: Round [67] log likelihood: -4564.805016
EM: Round [68] log likelihood: -4564.803925
EM: Round [69] log likelihood: -4564.802836
EM: Round [70] log likelihood: -4564.801750
EM: Round [71] log likelihood: -4564.800666
EM: Round [72] log likelihood: -4564.799585
EM: Round [73] log likelihood: -4564.798506
EM: Round [74] log likelihood: -4564.797430
EM: Round [75] log likelihood: -4564.796357
EM: Round [76] log likelihood: -4564.795286
EM: Round [77] log likelihood: -4564.794217
EM: Round [78] log likelihood: -4564.793152
EM: Round [79] log likelihood: -4564.792088
EM: Round [80] log likelihood: -4564.791027
EM: Round [81] log likelihood: -4564.789969
EM: Round [82] log likelihood: -4564.788913
EM: Round [83] log likelihood: -4564.787860
EM: Round [84] log likelihood: -4564.786809
EM: Round [85] log likelihood: -4564.785760
EM: Round [86] log likelihood: -4564.784714
EM: Round [87] log likelihood: -4564.783671
EM: Round [88] log likelihood: -4564.782630
EM: Round [89] log likelihood: -4564.781591
EM: Round [90] log likelihood: -4564.780555
EM: Round [91] log likelihood: -4564.779521
EM: Round [92] log likelihood: -4564.778489
EM: Round [93] log likelihood: -4564.777460
EM: Round [94] log likelihood: -4564.776433
EM: Round [95] log likelihood: -4564.775409
EM: Round [96] log likelihood: -4564.774387
EM: Round [97] log likelihood: -4564.773367
EM: Round [98] log likelihood: -4564.772350
EM: Round [99] log likelihood: -4564.771335
EM: Round [100] log likelihood: -4564.770323
EM: Round [101] log likelihood: -4564.769313
EM: Round [102] log likelihood: -4564.768305
EM: Round [103] log likelihood: -4564.767299
EM: Round [104] log likelihood: -4564.766296
EM: Round [105] log likelihood: -4564.765295
EM: Round [106] log likelihood: -4564.764296
EM: Round [107] log likelihood: -4564.763300
EM: Round [108] log likelihood: -4564.762306
EM: Round [109] log likelihood: -4564.761314
EM: Round [110] log likelihood: -4564.760324
EM: Round [111] log likelihood: -4564.759337
EM: Round [112] log likelihood: -4564.758352
EM: Round [113] log likelihood: -4564.757369
EM: Round [114] log likelihood: -4564.756388
EM: Round [115] log likelihood: -4564.755410
EM: Round [116] log likelihood: -4564.754434
EM: Round [117] log likelihood: -4564.753460
EM: Round [118] log likelihood: -4564.752488
EM: Round [119] log likelihood: -4564.751519
EM: Round [120] log likelihood: -4564.750551
EM: Round [121] log likelihood: -4564.749586
EM: Round [122] log likelihood: -4564.748623
EM: Round [123] log likelihood: -4564.747662
EM: Round [124] log likelihood: -4564.746704
EM: Round [125] log likelihood: -4564.745747
EM: Round [126] log likelihood: -4564.744793
EM: Round [127] log likelihood: -4564.743841
EM: Round [128] log likelihood: -4564.742891
EM: Round [129] log likelihood: -4564.741943
EM: Round [130] log likelihood: -4564.740997
EM: Round [131] log likelihood: -4564.740053
EM: Round [132] log likelihood: -4564.739111
EM: Round [133] log likelihood: -4564.738172
EM: Round [134] log likelihood: -4564.737235
EM: Round [135] log likelihood: -4564.736299
EM: Round [136] log likelihood: -4564.735366
EM: Round [137] log likelihood: -4564.734435
EM: Round [138] log likelihood: -4564.733506
EM: Round [139] log likelihood: -4564.732579
EM: Round [140] log likelihood: -4564.731654
EM: Round [141] log likelihood: -4564.730731
EM: Round [142] log likelihood: -4564.729810
EM: Round [143] log likelihood: -4564.728891
EM: Round [144] log likelihood: -4564.727974
EM: Round [145] log likelihood: -4564.727059
EM: Round [146] log likelihood: -4564.726147
EM: Round [147] log likelihood: -4564.725236
EM: Round [148] log likelihood: -4564.724327
EM: Round [149] log likelihood: -4564.723420
EM: Round [150] log likelihood: -4564.722516
EM: Round [151] log likelihood: -4564.721613
EM: Round [152] log likelihood: -4564.720712
EM: Round [153] log likelihood: -4564.719813
EM: Round [154] log likelihood: -4564.718916
EM: Round [155] log likelihood: -4564.718021
EM: Round [156] log likelihood: -4564.717129
EM: Round [157] log likelihood: -4564.716238
EM: Round [158] log likelihood: -4564.715348
EM: Round [159] log likelihood: -4564.714461
EM: Round [160] log likelihood: -4564.713576
EM: Round [161] log likelihood: -4564.712693
EM: Round [162] log likelihood: -4564.711812
EM: Round [163] log likelihood: -4564.710932
EM: Round [164] log likelihood: -4564.710055
EM: Round [165] log likelihood: -4564.709179
EM: Round [166] log likelihood: -4564.708305
EM: Round [167] log likelihood: -4564.707433
EM: Round [168] log likelihood: -4564.706564
EM: Round [169] log likelihood: -4564.705695
EM: Round [170] log likelihood: -4564.704829
EM: Round [171] log likelihood: -4564.703965
EM: Round [172] log likelihood: -4564.703103
EM: Round [173] log likelihood: -4564.702242
EM: Round [174] log likelihood: -4564.701383
EM: Round [175] log likelihood: -4564.700526
EM: Round [176] log likelihood: -4564.699671
EM: Round [177] log likelihood: -4564.698818
EM: Round [178] log likelihood: -4564.697967
EM: Round [179] log likelihood: -4564.697117
EM: Round [180] log likelihood: -4564.696269
EM: Round [181] log likelihood: -4564.695423
EM: Round [182] log likelihood: -4564.694579
EM: Round [183] log likelihood: -4564.693737
EM: Round [184] log likelihood: -4564.692896
EM: Round [185] log likelihood: -4564.692058
EM: Round [186] log likelihood: -4564.691221
EM: Round [187] log likelihood: -4564.690385
EM: Round [188] log likelihood: -4564.689552
EM: Round [189] log likelihood: -4564.688720
EM: Round [190] log likelihood: -4564.687891
EM: Round [191] log likelihood: -4564.687062
EM: Round [192] log likelihood: -4564.686236
EM: Round [193] log likelihood: -4564.685411
EM: Round [194] log likelihood: -4564.684589
EM: Round [195] log likelihood: -4564.683767
EM: Round [196] log likelihood: -4564.682948
EM: Round [197] log likelihood: -4564.682130
EM: Round [198] log likelihood: -4564.681314
EM: Round [199] log likelihood: -4564.680500
EM: Round [200] log likelihood: -4564.679688
EM: Round [201] log likelihood: -4564.678877
EM: Round [202] log likelihood: -4564.678068
EM: Round [203] log likelihood: -4564.677260
EM: Round [204] log likelihood: -4564.676455
EM: Round [205] log likelihood: -4564.675651
EM: Round [206] log likelihood: -4564.674848
EM: Round [207] log likelihood: -4564.674048
EM: Round [208] log likelihood: -4564.673249
EM: Round [209] log likelihood: -4564.672452
EM: Round [210] log likelihood: -4564.671656
EM: Round [211] log likelihood: -4564.670862
EM: Round [212] log likelihood: -4564.670070
EM: Round [213] log likelihood: -4564.669279
EM: Round [214] log likelihood: -4564.668490
EM: Round [215] log likelihood: -4564.667703
EM: Round [216] log likelihood: -4564.666917
EM: Round [217] log likelihood: -4564.666133
EM: Round [218] log likelihood: -4564.665350
EM: Round [219] log likelihood: -4564.664569
EM: Round [220] log likelihood: -4564.663790
EM: Round [221] log likelihood: -4564.663012
EM: Round [222] log likelihood: -4564.662236
EM: Round [223] log likelihood: -4564.661462
EM: Round [224] log likelihood: -4564.660689
EM: Round [225] log likelihood: -4564.659918
EM: Round [226] log likelihood: -4564.659148
EM: Round [227] log likelihood: -4564.658380
EM: Round [228] log likelihood: -4564.657614
EM: Round [229] log likelihood: -4564.656849
EM: Round [230] log likelihood: -4564.656086
EM: Round [231] log likelihood: -4564.655324
EM: Round [232] log likelihood: -4564.654564
EM: Round [233] log likelihood: -4564.653805
EM: Round [234] log likelihood: -4564.653048
EM: Round [235] log likelihood: -4564.652292
EM: Round [236] log likelihood: -4564.651538
EM: Round [237] log likelihood: -4564.650786
EM: Round [238] log likelihood: -4564.650035
EM: Round [239] log likelihood: -4564.649286
EM: Round [240] log likelihood: -4564.648538
EM: Round [241] log likelihood: -4564.647792
EM: Round [242] log likelihood: -4564.647047
EM: Round [243] log likelihood: -4564.646303
EM: Round [244] log likelihood: -4564.645562
EM: Round [245] log likelihood: -4564.644821
EM: Round [246] log likelihood: -4564.644083
EM: Round [247] log likelihood: -4564.643345
EM: Round [248] log likelihood: -4564.642610
EM: Round [249] log likelihood: -4564.641875
EM: Round [250] log likelihood: -4564.641143
EM: Round [251] log likelihood: -4564.640411
EM: Round [252] log likelihood: -4564.639682
EM: Round [253] log likelihood: -4564.638953
EM: Round [254] log likelihood: -4564.638226
EM: Round [255] log likelihood: -4564.637501
EM: Round [256] log likelihood: -4564.636777
EM: Round [257] log likelihood: -4564.636054
EM: Round [258] log likelihood: -4564.635333
EM: Round [259] log likelihood: -4564.634614
EM: Round [260] log likelihood: -4564.633896
EM: Round [261] log likelihood: -4564.633179
EM: Round [262] log likelihood: -4564.632464
EM: Round [263] log likelihood: -4564.631750
EM: Round [264] log likelihood: -4564.631038
EM: Round [265] log likelihood: -4564.630327
EM: Round [266] log likelihood: -4564.629617
EM: Round [267] log likelihood: -4564.628909
EM: Round [268] log likelihood: -4564.628202
EM: Round [269] log likelihood: -4564.627497
EM: Round [270] log likelihood: -4564.626793
EM: Round [271] log likelihood: -4564.626091
EM: Round [272] log likelihood: -4564.625390
EM: Round [273] log likelihood: -4564.624690
EM: Round [274] log likelihood: -4564.623992
EM: Round [275] log likelihood: -4564.623295
EM: Round [276] log likelihood: -4564.622599
EM: Round [277] log likelihood: -4564.621905
EM: Round [278] log likelihood: -4564.621212
EM: Round [279] log likelihood: -4564.620521
EM: Round [280] log likelihood: -4564.619831
EM: Round [281] log likelihood: -4564.619142
EM: Round [282] log likelihood: -4564.618455
EM: Round [283] log likelihood: -4564.617769
EM: Round [284] log likelihood: -4564.617085
EM: Round [285] log likelihood: -4564.616401
EM: Round [286] log likelihood: -4564.615719
EM: Round [287] log likelihood: -4564.615039
EM: Round [288] log likelihood: -4564.614360
EM: Round [289] log likelihood: -4564.613682
EM: Round [290] log likelihood: -4564.613005
EM: Round [291] log likelihood: -4564.612330
EM: Round [292] log likelihood: -4564.611656
EM: Round [293] log likelihood: -4564.610984
EM: Round [294] log likelihood: -4564.610313
EM: Round [295] log likelihood: -4564.609643
EM: Round [296] log likelihood: -4564.608974
EM: Round [297] log likelihood: -4564.608307
EM: Round [298] log likelihood: -4564.607641
EM: Round [299] log likelihood: -4564.606976
EM: Round [300] log likelihood: -4564.606313
EM: Round [301] log likelihood: -4564.605651
EM: Round [302] log likelihood: -4564.604990
EM: Round [303] log likelihood: -4564.604331
EM: Round [304] log likelihood: -4564.603673
EM: Round [305] log likelihood: -4564.603016
EM: Round [306] log likelihood: -4564.602360
EM: Round [307] log likelihood: -4564.601706
EM: Round [308] log likelihood: -4564.601053
EM: Round [309] log likelihood: -4564.600401
EM: Round [310] log likelihood: -4564.599750
EM: Round [311] log likelihood: -4564.599101
EM: Round [312] log likelihood: -4564.598453
EM: Round [313] log likelihood: -4564.597806
EM: Round [314] log likelihood: -4564.597161
EM: Round [315] log likelihood: -4564.596517
EM: Round [316] log likelihood: -4564.595874
EM: Round [317] log likelihood: -4564.595232
EM: Round [318] log likelihood: -4564.594591
EM: Round [319] log likelihood: -4564.593952
EM: Round [320] log likelihood: -4564.593314
EM: Round [321] log likelihood: -4564.592677
EM: Round [322] log likelihood: -4564.592042
EM: Round [323] log likelihood: -4564.591407
EM: Round [324] log likelihood: -4564.590774
EM: Round [325] log likelihood: -4564.590142
EM: Round [326] log likelihood: -4564.589512
EM: Round [327] log likelihood: -4564.588882
EM: Round [328] log likelihood: -4564.588254
EM: Round [329] log likelihood: -4564.587627
EM: Round [330] log likelihood: -4564.587001
EM: Round [331] log likelihood: -4564.586376
EM: Round [332] log likelihood: -4564.585753
EM: Round [333] log likelihood: -4564.585130
EM: Round [334] log likelihood: -4564.584509
EM: Round [335] log likelihood: -4564.583889
EM: Round [336] log likelihood: -4564.583271
EM: Round [337] log likelihood: -4564.582653
EM: Round [338] log likelihood: -4564.582037
EM: Round [339] log likelihood: -4564.581422
EM: Round [340] log likelihood: -4564.580808
EM: Round [341] log likelihood: -4564.580195
EM: Round [342] log likelihood: -4564.579583
EM: Round [343] log likelihood: -4564.578972
EM: Round [344] log likelihood: -4564.578363
EM: Round [345] log likelihood: -4564.577755
EM: Round [346] log likelihood: -4564.577148
EM: Round [347] log likelihood: -4564.576542
EM: Round [348] log likelihood: -4564.575937
EM: Round [349] log likelihood: -4564.575334
EM: Round [350] log likelihood: -4564.574731
EM: Round [351] log likelihood: -4564.574130
EM: Round [352] log likelihood: -4564.573530
EM: Round [353] log likelihood: -4564.572931
EM: Round [354] log likelihood: -4564.572333
EM: Round [355] log likelihood: -4564.571736
EM: Round [356] log likelihood: -4564.571140
EM: Round [357] log likelihood: -4564.570546
EM: Round [358] log likelihood: -4564.569953
EM: Round [359] log likelihood: -4564.569360
EM: Round [360] log likelihood: -4564.568769
EM: Round [361] log likelihood: -4564.568179
EM: Round [362] log likelihood: -4564.567590
EM: Round [363] log likelihood: -4564.567002
EM: Round [364] log likelihood: -4564.566416
EM: Round [365] log likelihood: -4564.565830
EM: Round [366] log likelihood: -4564.565245
EM: Round [367] log likelihood: -4564.564662
EM: Round [368] log likelihood: -4564.564080
EM: Round [369] log likelihood: -4564.563498
EM: Round [370] log likelihood: -4564.562918
EM: Round [371] log likelihood: -4564.562339
EM: Round [372] log likelihood: -4564.561761
EM: Round [373] log likelihood: -4564.561184
EM: Round [374] log likelihood: -4564.560608
EM: Round [375] log likelihood: -4564.560034
EM: Round [376] log likelihood: -4564.559460
EM: Round [377] log likelihood: -4564.558887
EM: Round [378] log likelihood: -4564.558316
EM: Round [379] log likelihood: -4564.557745
EM: Round [380] log likelihood: -4564.557176
EM: Round [381] log likelihood: -4564.556608
EM: Round [382] log likelihood: -4564.556040
EM: Round [383] log likelihood: -4564.555474
EM: Round [384] log likelihood: -4564.554909
EM: Round [385] log likelihood: -4564.554345
EM: Round [386] log likelihood: -4564.553782
EM: Round [387] log likelihood: -4564.553220
EM: Round [388] log likelihood: -4564.552659
EM: Round [389] log likelihood: -4564.552099
EM: Round [390] log likelihood: -4564.551540
EM: Round [391] log likelihood: -4564.550982
EM: Round [392] log likelihood: -4564.550425
EM: Round [393] log likelihood: -4564.549869
EM: Round [394] log likelihood: -4564.549314
EM: Round [395] log likelihood: -4564.548760
EM: Round [396] log likelihood: -4564.548208
EM: Round [397] log likelihood: -4564.547656
EM: Round [398] log likelihood: -4564.547105
EM: Round [399] log likelihood: -4564.546556
EM: Round [400] log likelihood: -4564.546007
EM: Round [401] log likelihood: -4564.545459
EM: Round [402] log likelihood: -4564.544912
EM: Round [403] log likelihood: -4564.544367
EM: Round [404] log likelihood: -4564.543822
EM: Round [405] log likelihood: -4564.543278
EM: Round [406] log likelihood: -4564.542736
EM: Round [407] log likelihood: -4564.542194
EM: Round [408] log likelihood: -4564.541653
EM: Round [409] log likelihood: -4564.541114
EM: Round [410] log likelihood: -4564.540575
EM: Round [411] log likelihood: -4564.540037
EM: Round [412] log likelihood: -4564.539500
EM: Round [413] log likelihood: -4564.538965
EM: Round [414] log likelihood: -4564.538430
EM: Round [415] log likelihood: -4564.537896
EM: Round [416] log likelihood: -4564.537363
EM: Round [417] log likelihood: -4564.536831
EM: Round [418] log likelihood: -4564.536301
EM: Round [419] log likelihood: -4564.535771
EM: Round [420] log likelihood: -4564.535242
EM: Round [421] log likelihood: -4564.534714
EM: Round [422] log likelihood: -4564.534187
EM: Round [423] log likelihood: -4564.533661
EM: Round [424] log likelihood: -4564.533135
EM: Round [425] log likelihood: -4564.532611
EM: Round [426] log likelihood: -4564.532088
EM: Round [427] log likelihood: -4564.531566
EM: Round [428] log likelihood: -4564.531044
EM: Round [429] log likelihood: -4564.530524
EM: Round [430] log likelihood: -4564.530005
EM: Round [431] log likelihood: -4564.529486
EM: Round [432] log likelihood: -4564.528969
EM: Round [433] log likelihood: -4564.528452
EM: Round [434] log likelihood: -4564.527936
EM: Round [435] log likelihood: -4564.527422
EM: Round [436] log likelihood: -4564.526908
EM: Round [437] log likelihood: -4564.526395
EM: Round [438] log likelihood: -4564.525883
EM: Round [439] log likelihood: -4564.525372
EM: Round [440] log likelihood: -4564.524862
EM: Round [441] log likelihood: -4564.524353
EM: Round [442] log likelihood: -4564.523844
EM: Round [443] log likelihood: -4564.523337
EM: Round [444] log likelihood: -4564.522830
EM: Round [445] log likelihood: -4564.522325
EM: Round [446] log likelihood: -4564.521820
EM: Round [447] log likelihood: -4564.521317
EM: Round [448] log likelihood: -4564.520814
EM: Round [449] log likelihood: -4564.520312
EM: Round [450] log likelihood: -4564.519811
EM: Round [451] log likelihood: -4564.519311
EM: Round [452] log likelihood: -4564.518811
EM: Round [453] log likelihood: -4564.518313
EM: Round [454] log likelihood: -4564.517816
EM: Round [455] log likelihood: -4564.517319
EM: Round [456] log likelihood: -4564.516823
EM: Round [457] log likelihood: -4564.516329
EM: Round [458] log likelihood: -4564.515835
EM: Round [459] log likelihood: -4564.515342
EM: Round [460] log likelihood: -4564.514850
EM: Round [461] log likelihood: -4564.514358
EM: Round [462] log likelihood: -4564.513868
EM: Round [463] log likelihood: -4564.513379
EM: Round [464] log likelihood: -4564.512890
EM: Round [465] log likelihood: -4564.512402
EM: Round [466] log likelihood: -4564.511915
EM: Round [467] log likelihood: -4564.511429
EM: Round [468] log likelihood: -4564.510944
EM: Round [469] log likelihood: -4564.510460
EM: Round [470] log likelihood: -4564.509976
EM: Round [471] log likelihood: -4564.509494
EM: Round [472] log likelihood: -4564.509012
EM: Round [473] log likelihood: -4564.508531
EM: Round [474] log likelihood: -4564.508051
EM: Round [475] log likelihood: -4564.507572
EM: Round [476] log likelihood: -4564.507094
EM: Round [477] log likelihood: -4564.506616
EM: Round [478] log likelihood: -4564.506139
EM: Round [479] log likelihood: -4564.505664
EM: Round [480] log likelihood: -4564.505189
EM: Round [481] log likelihood: -4564.504715
EM: Round [482] log likelihood: -4564.504241
EM: Round [483] log likelihood: -4564.503769
EM: Round [484] log likelihood: -4564.503297
EM: Round [485] log likelihood: -4564.502827
EM: Round [486] log likelihood: -4564.502357
EM: Round [487] log likelihood: -4564.501888
EM: Round [488] log likelihood: -4564.501419
EM: Round [489] log likelihood: -4564.500952
EM: Round [490] log likelihood: -4564.500485
EM: Round [491] log likelihood: -4564.500019
EM: Round [492] log likelihood: -4564.499554
EM: Round [493] log likelihood: -4564.499090
EM: Round [494] log likelihood: -4564.498627
EM: Round [495] log likelihood: -4564.498164
EM: Round [496] log likelihood: -4564.497702
EM: Round [497] log likelihood: -4564.497242
EM: Round [498] log likelihood: -4564.496781
EM: Round [499] log likelihood: -4564.496322
EM: Round [500] log likelihood: -4564.495864
EM: Round [501] log likelihood: -4564.495406
EM: Round [502] log likelihood: -4564.494949
EM: Round [503] log likelihood: -4564.494493
EM: Round [504] log likelihood: -4564.494038
EM: Round [505] log likelihood: -4564.493583
EM: Round [506] log likelihood: -4564.493129
EM: Round [507] log likelihood: -4564.492676
EM: Round [508] log likelihood: -4564.492224
EM: Round [509] log likelihood: -4564.491773
EM: Round [510] log likelihood: -4564.491322
EM: Round [511] log likelihood: -4564.490872
EM: Round [512] log likelihood: -4564.490423
EM: Round [513] log likelihood: -4564.489975
EM: Round [514] log likelihood: -4564.489528
EM: Round [515] log likelihood: -4564.489081
EM: Round [516] log likelihood: -4564.488635
EM: Round [517] log likelihood: -4564.488190
EM: Round [518] log likelihood: -4564.487746
EM: Round [519] log likelihood: -4564.487302
EM: Round [520] log likelihood: -4564.486859
EM: Round [521] log likelihood: -4564.486417
EM: Round [522] log likelihood: -4564.485976
EM: Round [523] log likelihood: -4564.485536
EM: Round [524] log likelihood: -4564.485096
EM: Round [525] log likelihood: -4564.484657
EM: Round [526] log likelihood: -4564.484219
EM: Round [527] log likelihood: -4564.483781
EM: Round [528] log likelihood: -4564.483345
EM: Round [529] log likelihood: -4564.482909
EM: Round [530] log likelihood: -4564.482474
EM: Round [531] log likelihood: -4564.482039
EM: Round [532] log likelihood: -4564.481605
EM: Round [533] log likelihood: -4564.481172
EM: Round [534] log likelihood: -4564.480740
EM: Round [535] log likelihood: -4564.480309
EM: Round [536] log likelihood: -4564.479878
EM: Round [537] log likelihood: -4564.479448
EM: Round [538] log likelihood: -4564.479019
EM: Round [539] log likelihood: -4564.478590
EM: Round [540] log likelihood: -4564.478163
EM: Round [541] log likelihood: -4564.477736
EM: Round [542] log likelihood: -4564.477309
EM: Round [543] log likelihood: -4564.476884
EM: Round [544] log likelihood: -4564.476459
EM: Round [545] log likelihood: -4564.476035
EM: Round [546] log likelihood: -4564.475612
EM: Round [547] log likelihood: -4564.475189
EM: Round [548] log likelihood: -4564.474767
EM: Round [549] log likelihood: -4564.474346
EM: Round [550] log likelihood: -4564.473925
EM: Round [551] log likelihood: -4564.473506
EM: Round [552] log likelihood: -4564.473087
EM: Round [553] log likelihood: -4564.472668
EM: Round [554] log likelihood: -4564.472251
EM: Round [555] log likelihood: -4564.471834
EM: Round [556] log likelihood: -4564.471418
EM: Round [557] log likelihood: -4564.471002
EM: Round [558] log likelihood: -4564.470588
EM: Round [559] log likelihood: -4564.470174
EM: Round [560] log likelihood: -4564.469760
EM: Round [561] log likelihood: -4564.469348
EM: Round [562] log likelihood: -4564.468936
EM: Round [563] log likelihood: -4564.468524
EM: Round [564] log likelihood: -4564.468114
EM: Round [565] log likelihood: -4564.467704
EM: Round [566] log likelihood: -4564.467295
EM: Round [567] log likelihood: -4564.466887
EM: Round [568] log likelihood: -4564.466479
EM: Round [569] log likelihood: -4564.466072
EM: Round [570] log likelihood: -4564.465665
EM: Round [571] log likelihood: -4564.465260
EM: Round [572] log likelihood: -4564.464855
EM: Round [573] log likelihood: -4564.464451
EM: Round [574] log likelihood: -4564.464047
EM: Round [575] log likelihood: -4564.463644
EM: Round [576] log likelihood: -4564.463242
EM: Round [577] log likelihood: -4564.462840
EM: Round [578] log likelihood: -4564.462439
EM: Round [579] log likelihood: -4564.462039
EM: Round [580] log likelihood: -4564.461640
EM: Round [581] log likelihood: -4564.461241
EM: Round [582] log likelihood: -4564.460843
EM: Round [583] log likelihood: -4564.460445
EM: Round [584] log likelihood: -4564.460048
EM: Round [585] log likelihood: -4564.459652
EM: Round [586] log likelihood: -4564.459257
EM: Round [587] log likelihood: -4564.458862
EM: Round [588] log likelihood: -4564.458468
EM: Round [589] log likelihood: -4564.458074
EM: Round [590] log likelihood: -4564.457682
EM: Round [591] log likelihood: -4564.457289
EM: Round [592] log likelihood: -4564.456898
EM: Round [593] log likelihood: -4564.456507
EM: Round [594] log likelihood: -4564.456117
EM: Round [595] log likelihood: -4564.455727
EM: Round [596] log likelihood: -4564.455338
EM: Round [597] log likelihood: -4564.454950
EM: Round [598] log likelihood: -4564.454563
EM: Round [599] log likelihood: -4564.454176
EM: Round [600] log likelihood: -4564.453790
EM: Round [601] log likelihood: -4564.453404
EM: Round [602] log likelihood: -4564.453019
EM: Round [603] log likelihood: -4564.452635
EM: Round [604] log likelihood: -4564.452251
EM: Round [605] log likelihood: -4564.451868
EM: Round [606] log likelihood: -4564.451486
EM: Round [607] log likelihood: -4564.451104
EM: Round [608] log likelihood: -4564.450723
EM: Round [609] log likelihood: -4564.450342
EM: Round [610] log likelihood: -4564.449962
EM: Round [611] log likelihood: -4564.449583
EM: Round [612] log likelihood: -4564.449205
EM: Round [613] log likelihood: -4564.448827
EM: Round [614] log likelihood: -4564.448449
EM: Round [615] log likelihood: -4564.448073
EM: Round [616] log likelihood: -4564.447697
EM: Round [617] log likelihood: -4564.447321
EM: Round [618] log likelihood: -4564.446946
EM: Round [619] log likelihood: -4564.446572
EM: Round [620] log likelihood: -4564.446199
EM: Round [621] log likelihood: -4564.445826
EM: Round [622] log likelihood: -4564.445454
EM: Round [623] log likelihood: -4564.445082
EM: Round [624] log likelihood: -4564.444711
EM: Round [625] log likelihood: -4564.444340
EM: Round [626] log likelihood: -4564.443970
EM: Round [627] log likelihood: -4564.443601
EM: Round [628] log likelihood: -4564.443233
EM: Round [629] log likelihood: -4564.442865
EM: Round [630] log likelihood: -4564.442497
EM: Round [631] log likelihood: -4564.442131
EM: Round [632] log likelihood: -4564.441764
EM: Round [633] log likelihood: -4564.441399
EM: Round [634] log likelihood: -4564.441034
EM: Round [635] log likelihood: -4564.440670
EM: Round [636] log likelihood: -4564.440306
EM: Round [637] log likelihood: -4564.439943
EM: Round [638] log likelihood: -4564.439580
EM: Round [639] log likelihood: -4564.439218
EM: Round [640] log likelihood: -4564.438857
EM: Round [641] log likelihood: -4564.438496
EM: Round [642] log likelihood: -4564.438136
EM: Round [643] log likelihood: -4564.437776
EM: Round [644] log likelihood: -4564.437417
EM: Round [645] log likelihood: -4564.437059
EM: Round [646] log likelihood: -4564.436701
EM: Round [647] log likelihood: -4564.436344
EM: Round [648] log likelihood: -4564.435988
EM: Round [649] log likelihood: -4564.435632
EM: Round [650] log likelihood: -4564.435276
EM: Round [651] log likelihood: -4564.434921
EM: Round [652] log likelihood: -4564.434567
EM: Round [653] log likelihood: -4564.434213
EM: Round [654] log likelihood: -4564.433860
EM: Round [655] log likelihood: -4564.433508
EM: Round [656] log likelihood: -4564.433156
EM: Round [657] log likelihood: -4564.432805
EM: Round [658] log likelihood: -4564.432454
EM: Round [659] log likelihood: -4564.432104
EM: Round [660] log likelihood: -4564.431754
EM: Round [661] log likelihood: -4564.431405
EM: Round [662] log likelihood: -4564.431056
EM: Round [663] log likelihood: -4564.430709
EM: Round [664] log likelihood: -4564.430361
EM: Round [665] log likelihood: -4564.430014
EM: Round [666] log likelihood: -4564.429668
EM: Round [667] log likelihood: -4564.429323
EM: Round [668] log likelihood: -4564.428978
EM: Round [669] log likelihood: -4564.428633
EM: Round [670] log likelihood: -4564.428289
EM: Round [671] log likelihood: -4564.427946
EM: Round [672] log likelihood: -4564.427603
EM: Round [673] log likelihood: -4564.427261
EM: Round [674] log likelihood: -4564.426919
EM: Round [675] log likelihood: -4564.426578
EM: Round [676] log likelihood: -4564.426237
EM: Round [677] log likelihood: -4564.425897
EM: Round [678] log likelihood: -4564.425558
EM: Round [679] log likelihood: -4564.425219
EM: Round [680] log likelihood: -4564.424881
EM: Round [681] log likelihood: -4564.424543
EM: Round [682] log likelihood: -4564.424206
EM: Round [683] log likelihood: -4564.423869
EM: Round [684] log likelihood: -4564.423533
EM: Round [685] log likelihood: -4564.423197
EM: Round [686] log likelihood: -4564.422862
EM: Round [687] log likelihood: -4564.422528
EM: Round [688] log likelihood: -4564.422194
EM: Round [689] log likelihood: -4564.421860
EM: Round [690] log likelihood: -4564.421527
EM: Round [691] log likelihood: -4564.421195
EM: Round [692] log likelihood: -4564.420863
EM: Round [693] log likelihood: -4564.420532
EM: Round [694] log likelihood: -4564.420201
EM: Round [695] log likelihood: -4564.419871
EM: Round [696] log likelihood: -4564.419541
EM: Round [697] log likelihood: -4564.419212
EM: Round [698] log likelihood: -4564.418884
EM: Round [699] log likelihood: -4564.418556
EM: Round [700] log likelihood: -4564.418228
EM: Round [701] log likelihood: -4564.417901
EM: Round [702] log likelihood: -4564.417575
EM: Round [703] log likelihood: -4564.417249
EM: Round [704] log likelihood: -4564.416923
EM: Round [705] log likelihood: -4564.416599
EM: Round [706] log likelihood: -4564.416274
EM: Round [707] log likelihood: -4564.415950
EM: Round [708] log likelihood: -4564.415627
EM: Round [709] log likelihood: -4564.415304
EM: Round [710] log likelihood: -4564.414982
EM: Round [711] log likelihood: -4564.414660
EM: Round [712] log likelihood: -4564.414339
EM: Round [713] log likelihood: -4564.414018
EM: Round [714] log likelihood: -4564.413698
EM: Round [715] log likelihood: -4564.413379
EM: Round [716] log likelihood: -4564.413059
EM: Round [717] log likelihood: -4564.412741
EM: Round [718] log likelihood: -4564.412423
EM: Round [719] log likelihood: -4564.412105
EM: Round [720] log likelihood: -4564.411788
EM: Round [721] log likelihood: -4564.411471
EM: Round [722] log likelihood: -4564.411155
EM: Round [723] log likelihood: -4564.410840
EM: Round [724] log likelihood: -4564.410525
EM: Round [725] log likelihood: -4564.410210
EM: Round [726] log likelihood: -4564.409896
EM: Round [727] log likelihood: -4564.409582
EM: Round [728] log likelihood: -4564.409269
EM: Round [729] log likelihood: -4564.408957
EM: Round [730] log likelihood: -4564.408645
EM: Round [731] log likelihood: -4564.408333
EM: Round [732] log likelihood: -4564.408022
EM: Round [733] log likelihood: -4564.407712
EM: Round [734] log likelihood: -4564.407402
EM: Round [735] log likelihood: -4564.407092
EM: Round [736] log likelihood: -4564.406783
EM: Round [737] log likelihood: -4564.406474
EM: Round [738] log likelihood: -4564.406166
EM: Round [739] log likelihood: -4564.405859
EM: Round [740] log likelihood: -4564.405552
EM: Round [741] log likelihood: -4564.405245
EM: Round [742] log likelihood: -4564.404939
EM: Round [743] log likelihood: -4564.404633
EM: Round [744] log likelihood: -4564.404328
EM: Round [745] log likelihood: -4564.404024
EM: Round [746] log likelihood: -4564.403720
EM: Round [747] log likelihood: -4564.403416
EM: Round [748] log likelihood: -4564.403113
EM: Round [749] log likelihood: -4564.402810
EM: Round [750] log likelihood: -4564.402508
EM: Round [751] log likelihood: -4564.402206
EM: Round [752] log likelihood: -4564.401905
EM: Round [753] log likelihood: -4564.401604
EM: Round [754] log likelihood: -4564.401304
EM: Round [755] log likelihood: -4564.401004
EM: Round [756] log likelihood: -4564.400705
EM: Round [757] log likelihood: -4564.400406
EM: Round [758] log likelihood: -4564.400107
EM: Round [759] log likelihood: -4564.399809
EM: Round [760] log likelihood: -4564.399512
EM: Round [761] log likelihood: -4564.399215
EM: Round [762] log likelihood: -4564.398919
EM: Round [763] log likelihood: -4564.398623
EM: Round [764] log likelihood: -4564.398327
EM: Round [765] log likelihood: -4564.398032
EM: Round [766] log likelihood: -4564.397737
EM: Round [767] log likelihood: -4564.397443
EM: Round [768] log likelihood: -4564.397150
EM: Round [769] log likelihood: -4564.396856
EM: Round [770] log likelihood: -4564.396564
EM: Round [771] log likelihood: -4564.396271
EM: Round [772] log likelihood: -4564.395979
EM: Round [773] log likelihood: -4564.395688
EM: Round [774] log likelihood: -4564.395397
EM: Round [775] log likelihood: -4564.395107
EM: Round [776] log likelihood: -4564.394817
EM: Round [777] log likelihood: -4564.394527
EM: Round [778] log likelihood: -4564.394238
EM: Round [779] log likelihood: -4564.393950
EM: Round [780] log likelihood: -4564.393662
EM: Round [781] log likelihood: -4564.393374
EM: Round [782] log likelihood: -4564.393087
EM: Round [783] log likelihood: -4564.392800
EM: Round [784] log likelihood: -4564.392513
EM: Round [785] log likelihood: -4564.392228
EM: Round [786] log likelihood: -4564.391942
EM: Round [787] log likelihood: -4564.391657
EM: Round [788] log likelihood: -4564.391373
EM: Round [789] log likelihood: -4564.391089
EM: Round [790] log likelihood: -4564.390805
EM: Round [791] log likelihood: -4564.390522
EM: Round [792] log likelihood: -4564.390239
EM: Round [793] log likelihood: -4564.389957
EM: Round [794] log likelihood: -4564.389675
EM: Round [795] log likelihood: -4564.389394
EM: Round [796] log likelihood: -4564.389113
EM: Round [797] log likelihood: -4564.388832
EM: Round [798] log likelihood: -4564.388552
EM: Round [799] log likelihood: -4564.388272
EM: Round [800] log likelihood: -4564.387993
EM: Round [801] log likelihood: -4564.387714
EM: Round [802] log likelihood: -4564.387436
EM: Round [803] log likelihood: -4564.387158
EM: Round [804] log likelihood: -4564.386881
EM: Round [805] log likelihood: -4564.386604
EM: Round [806] log likelihood: -4564.386327
EM: Round [807] log likelihood: -4564.386051
EM: Round [808] log likelihood: -4564.385775
EM: Round [809] log likelihood: -4564.385500
EM: Round [810] log likelihood: -4564.385225
EM: Round [811] log likelihood: -4564.384951
EM: Round [812] log likelihood: -4564.384677
EM: Round [813] log likelihood: -4564.384403
EM: Round [814] log likelihood: -4564.384130
EM: Round [815] log likelihood: -4564.383857
EM: Round [816] log likelihood: -4564.383585
EM: Round [817] log likelihood: -4564.383313
EM: Round [818] log likelihood: -4564.383042
EM: Round [819] log likelihood: -4564.382771
EM: Round [820] log likelihood: -4564.382500
EM: Round [821] log likelihood: -4564.382230
EM: Round [822] log likelihood: -4564.381960
EM: Round [823] log likelihood: -4564.381691
EM: Round [824] log likelihood: -4564.381422
EM: Round [825] log likelihood: -4564.381154
EM: Round [826] log likelihood: -4564.380886
EM: Round [827] log likelihood: -4564.380618
EM: Round [828] log likelihood: -4564.380351
EM: Round [829] log likelihood: -4564.380084
EM: Round [830] log likelihood: -4564.379818
EM: Round [831] log likelihood: -4564.379552
EM: Round [832] log likelihood: -4564.379286
EM: Round [833] log likelihood: -4564.379021
EM: Round [834] log likelihood: -4564.378756
EM: Round [835] log likelihood: -4564.378492
EM: Round [836] log likelihood: -4564.378228
EM: Round [837] log likelihood: -4564.377965
EM: Round [838] log likelihood: -4564.377702
EM: Round [839] log likelihood: -4564.377439
EM: Round [840] log likelihood: -4564.377177
EM: Round [841] log likelihood: -4564.376915
EM: Round [842] log likelihood: -4564.376653
EM: Round [843] log likelihood: -4564.376392
EM: Round [844] log likelihood: -4564.376132
EM: Round [845] log likelihood: -4564.375872
EM: Round [846] log likelihood: -4564.375612
EM: Round [847] log likelihood: -4564.375352
EM: Round [848] log likelihood: -4564.375093
EM: Round [849] log likelihood: -4564.374835
EM: Round [850] log likelihood: -4564.374576
EM: Round [851] log likelihood: -4564.374319
EM: Round [852] log likelihood: -4564.374061
EM: Round [853] log likelihood: -4564.373804
EM: Round [854] log likelihood: -4564.373548
EM: Round [855] log likelihood: -4564.373291
EM: Round [856] log likelihood: -4564.373036
EM: Round [857] log likelihood: -4564.372780
EM: Round [858] log likelihood: -4564.372525
EM: Round [859] log likelihood: -4564.372270
EM: Round [860] log likelihood: -4564.372016
EM: Round [861] log likelihood: -4564.371762
EM: Round [862] log likelihood: -4564.371509
EM: Round [863] log likelihood: -4564.371256
EM: Round [864] log likelihood: -4564.371003
EM: Round [865] log likelihood: -4564.370751
EM: Round [866] log likelihood: -4564.370499
EM: Round [867] log likelihood: -4564.370247
EM: Round [868] log likelihood: -4564.369996
EM: Round [869] log likelihood: -4564.369746
EM: Round [870] log likelihood: -4564.369495
EM: Round [871] log likelihood: -4564.369245
EM: Round [872] log likelihood: -4564.368996
EM: Round [873] log likelihood: -4564.368747
EM: Round [874] log likelihood: -4564.368498
EM: Round [875] log likelihood: -4564.368249
EM: Round [876] log likelihood: -4564.368001
EM: Round [877] log likelihood: -4564.367754
EM: Round [878] log likelihood: -4564.367506
EM: Round [879] log likelihood: -4564.367259
EM: Round [880] log likelihood: -4564.367013
EM: Round [881] log likelihood: -4564.366767
EM: Round [882] log likelihood: -4564.366521
EM: Round [883] log likelihood: -4564.366276
EM: Round [884] log likelihood: -4564.366031
EM: Round [885] log likelihood: -4564.365786
EM: Round [886] log likelihood: -4564.365542
EM: Round [887] log likelihood: -4564.365298
EM: Round [888] log likelihood: -4564.365054
EM: Round [889] log likelihood: -4564.364811
EM: Round [890] log likelihood: -4564.364569
EM: Round [891] log likelihood: -4564.364326
EM: Round [892] log likelihood: -4564.364084
EM: Round [893] log likelihood: -4564.363843
EM: Round [894] log likelihood: -4564.363601
EM: Round [895] log likelihood: -4564.363360
EM: Round [896] log likelihood: -4564.363120
EM: Round [897] log likelihood: -4564.362880
EM: Round [898] log likelihood: -4564.362640
EM: Round [899] log likelihood: -4564.362401
EM: Round [900] log likelihood: -4564.362161
EM: Round [901] log likelihood: -4564.361923
EM: Round [902] log likelihood: -4564.361684
EM: Round [903] log likelihood: -4564.361446
EM: Round [904] log likelihood: -4564.361209
EM: Round [905] log likelihood: -4564.360972
EM: Round [906] log likelihood: -4564.360735
EM: Round [907] log likelihood: -4564.360498
EM: Round [908] log likelihood: -4564.360262
EM: Round [909] log likelihood: -4564.360026
EM: Round [910] log likelihood: -4564.359791
EM: Round [911] log likelihood: -4564.359556
EM: Round [912] log likelihood: -4564.359321
EM: Round [913] log likelihood: -4564.359087
EM: Round [914] log likelihood: -4564.358853
EM: Round [915] log likelihood: -4564.358619
EM: Round [916] log likelihood: -4564.358386
EM: Round [917] log likelihood: -4564.358153
EM: Round [918] log likelihood: -4564.357920
EM: Round [919] log likelihood: -4564.357688
EM: Round [920] log likelihood: -4564.357456
EM: Round [921] log likelihood: -4564.357225
EM: Round [922] log likelihood: -4564.356994
EM: Round [923] log likelihood: -4564.356763
EM: Round [924] log likelihood: -4564.356533
EM: Round [925] log likelihood: -4564.356302
EM: Round [926] log likelihood: -4564.356073
EM: Round [927] log likelihood: -4564.355843
EM: Round [928] log likelihood: -4564.355614
EM: Round [929] log likelihood: -4564.355386
EM: Round [930] log likelihood: -4564.355157
EM: Round [931] log likelihood: -4564.354929
EM: Round [932] log likelihood: -4564.354702
EM: Round [933] log likelihood: -4564.354474
EM: Round [934] log likelihood: -4564.354247
EM: Round [935] log likelihood: -4564.354021
EM: Round [936] log likelihood: -4564.353794
EM: Round [937] log likelihood: -4564.353569
EM: Round [938] log likelihood: -4564.353343
EM: Round [939] log likelihood: -4564.353118
EM: Round [940] log likelihood: -4564.352893
EM: Round [941] log likelihood: -4564.352668
EM: Round [942] log likelihood: -4564.352444
EM: Round [943] log likelihood: -4564.352220
EM: Round [944] log likelihood: -4564.351997
EM: Round [945] log likelihood: -4564.351773
EM: Round [946] log likelihood: -4564.351551
EM: Round [947] log likelihood: -4564.351328
EM: Round [948] log likelihood: -4564.351106
EM: Round [949] log likelihood: -4564.350884
EM: Round [950] log likelihood: -4564.350662
EM: Round [951] log likelihood: -4564.350441
EM: Round [952] log likelihood: -4564.350220
EM: Round [953] log likelihood: -4564.350000
EM: Round [954] log likelihood: -4564.349780
EM: Round [955] log likelihood: -4564.349560
EM: Round [956] log likelihood: -4564.349340
EM: Round [957] log likelihood: -4564.349121
EM: Round [958] log likelihood: -4564.348902
EM: Round [959] log likelihood: -4564.348684
EM: Round [960] log likelihood: -4564.348466
EM: Round [961] log likelihood: -4564.348248
EM: Round [962] log likelihood: -4564.348030
EM: Round [963] log likelihood: -4564.347813
EM: Round [964] log likelihood: -4564.347596
EM: Round [965] log likelihood: -4564.347380
EM: Round [966] log likelihood: -4564.347163
EM: Round [967] log likelihood: -4564.346948
EM: Round [968] log likelihood: -4564.346732
EM: Round [969] log likelihood: -4564.346517
EM: Round [970] log likelihood: -4564.346302
EM: Round [971] log likelihood: -4564.346087
EM: Round [972] log likelihood: -4564.345873
EM: Round [973] log likelihood: -4564.345659
EM: Round [974] log likelihood: -4564.345445
EM: Round [975] log likelihood: -4564.345232
EM: Round [976] log likelihood: -4564.345019
EM: Round [977] log likelihood: -4564.344806
EM: Round [978] log likelihood: -4564.344594
EM: Round [979] log likelihood: -4564.344382
EM: Round [980] log likelihood: -4564.344170
EM: Round [981] log likelihood: -4564.343959
EM: Round [982] log likelihood: -4564.343748
EM: Round [983] log likelihood: -4564.343537
EM: Round [984] log likelihood: -4564.343327
EM: Round [985] log likelihood: -4564.343117
EM: Round [986] log likelihood: -4564.342907
EM: Round [987] log likelihood: -4564.342697
EM: Round [988] log likelihood: -4564.342488
EM: Round [989] log likelihood: -4564.342279
EM: Round [990] log likelihood: -4564.342071
EM: Round [991] log likelihood: -4564.341863
EM: Round [992] log likelihood: -4564.341655
EM: Round [993] log likelihood: -4564.341447
EM: Round [994] log likelihood: -4564.341240
EM: Round [995] log likelihood: -4564.341033
EM: Round [996] log likelihood: -4564.340826
EM: Round [997] log likelihood: -4564.340620
EM: Round [998] log likelihood: -4564.340414
EM: Round [999] log likelihood: -4564.340208
EM: Round [1000] log likelihood: -4564.340003
EM: Round [1001] log likelihood: -4564.339797
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz: 296148334
Execution Time = 5.66 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa --gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  > /tmp/nxf.nLU2lRNXIN/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fa --gtf /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gtf  > /tmp/nxf.nLU2lRNXIN/fi_workdir/microH.dat
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.nLU2lRNXIN/fi_workdir/microH.dat /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.nLU2lRNXIN/fi_workdir/microH.dat /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.nLU2lRNXIN --json_outfile /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00654_B23MVV7LT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.nLU2lRNXIN --json_outfile /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00654_B23MVV7LT4_1
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00654_B23MVV7LT4_1 --html_output /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00654_B23MVV7LT4_1 --html_output /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000228327.3]
WARNING, no entry stored in dbm for [ENSG00000228327.3]
WARNING, no entry stored in dbm for [ENSG00000228327.3]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.nLU2lRNXIN/ctat_genome_lib_build_dir > /tmp/nxf.nLU2lRNXIN/tih_rna_sample_00654_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
Running: touch /tmp/nxf.nLU2lRNXIN/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory