File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/74454287f9898c8b831e7d9b3b0537/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00575_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/74454287f9898c8b831e7d9b3b0537/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/74454287f9898c8b831e7d9b3b0537/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/3d69f286743fc925a3e0acd1cf500f/tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/9cca89b9072f1f9039181323c42f25/tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 70706377
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	70706377
Known Splicing Events:	70110928
Partial Novel Splicing Events:	304348
Novel Splicing Events:	257295
Filtered Splicing Events:	33806

Total splicing  Junctions:	208068
Known Splicing Junctions:	170079
Partial Novel Splicing Junctions:	20220
Novel Splicing Junctions:	17769

===================================================================
Create BED file ...
Create Interact file ...