.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00575_B23MVV7LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/1a9111bf87a4c56bbb682c85031a34/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00575_B23MVV7LT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/e4a550b91aa0dc9c70f05f52784a83/tih_rna_sample_00575_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/1a9111bf87a4c56bbb682c85031a34/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/1a9111bf87a4c56bbb682c85031a34/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d18bad769c52a187db994aea4b113f/tih_rna_sample_00575_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
TRIM33--VTCN1
starfusion
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing TRIM33--VTCN1:   0%|          | 0/1 [00:00<?, ?it/s]
Processing TRIM33--VTCN1: 100%|██████████| 1/1 [00:00<00:00,  9.23it/s]
Processing TRIM33--VTCN1: 100%|██████████| 1/1 [00:00<00:00,  9.21it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory