.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (tih_rna_sample_00591_B23MVV7LT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/a992caa601f11ab80d52aadb0c7137/.command.sh
Size: 415 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (tih_rna_sample_00591_B23MVV7LT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "tih_rna_sample_00591_B23MVV7LT4_1.vcf" \
    --output "tih_rna_sample_00591_B23MVV7LT4_1.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS