Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/a26525c7780d825bba065ce27124f1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/a26525c7780d825bba065ce27124f1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/573966038486a08ed5e1f7146b8638/tih_rna_sample_00614_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/05ba2d02147d58b8146f2740c813ba/tih_rna_sample_00614_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory