File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/920ef44039ee26ee59b8890a273c5f/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (FFPE_HD789_01_RNA_13_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/920ef44039ee26ee59b8890a273c5f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/cb3e83c18a940406d783cbf1ae94cf/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/920ef44039ee26ee59b8890a273c5f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/aa2916da37731c19fb590752e83a80/FFPE_HD789_01_RNA_13_B23MVV7LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: FFPE_HD789_01_RNA_13_B23MVV7LT4_1/abundance.h5
Successfully converted FFPE_HD789_01_RNA_13_B23MVV7LT4_1/abundance.h5 to FFPE_HD789_01_RNA_13_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: FFPE_HD789_01_RNA_13_B23MVV7LT4_1
  Mean Fragment Length: 181.4 bp
  Median Fragment Length: 163.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 1.78%
  pct_hk_est_counts: 0.707%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.016%
  pct_ribo_tpm: 5.231%
  pct_hk_tpm: 1.03%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 3.918%