Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f65016ba237998926cb8c2773f2ba9/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/b3baf5d127f21352bc6efe7f6a5e13/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/b3baf5d127f21352bc6efe7f6a5e13/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/6ca63cda42c9a8f48b82024fc6f569/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled