Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/ddfcbb0693bc896de23657a14f3eb3/tih_rna_sample_00586_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/9b1560797760291928696e80d4f030/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/9b1560797760291928696e80d4f030/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 79000000 records
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Processed 118000000 records
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Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
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Processed 362000000 records
paired = 179596874
unpaired = 3502034
MERGED PAIRED END READS = 179596874
MATES PROCESSED = 362695782
TOTAL READS = 183098908
DISTINCT READS = 9.77451e+07
DISTINCT COUNTS = 646
MAX COUNT = 828739
COUNTS OF 1 = 5.88052e+07
MAX TERMS = 100
OBSERVED COUNTS (828740)
1 58805244
2 21689246
3 8676569
4 3815095
5 1848253
6 979752
7 562514
8 347494
9 227038
10 156775
11 111889
12 83496
13 64289
14 50189
15 40019
16 32946
17 27154
18 23302
19 19499
20 16890
21 14443
22 12756
23 11163
24 10066
25 8713
26 7755
27 7020
28 6468
29 5783
30 5174
31 4819
32 4319
33 4000
34 3606
35 3406
36 3059
37 2802
38 2663
39 2473
40 2210
41 2129
42 1971
43 1914
44 1712
45 1673
46 1421
47 1422
48 1314
49 1282
50 1232
51 1081
52 1122
53 1030
54 958
55 861
56 880
57 883
58 754
59 768
60 730
61 619
62 698
63 601
64 574
65 548
66 507
67 494
68 501
69 408
70 443
71 419
72 394
73 370
74 326
75 352
76 339
77 305
78 315
79 293
80 294
81 285
82 255
83 245
84 272
85 264
86 223
87 228
88 232
89 203
90 170
91 221
92 193
93 187
94 159
95 162
96 174
97 168
98 163
99 161
100 160
101 147
102 109
103 136
104 129
105 120
106 132
107 133
108 126
109 107
110 112
111 95
112 109
113 112
114 106
115 83
116 94
117 104
118 72
119 82
120 86
121 75
122 89
123 96
124 71
125 74
126 68
127 61
128 70
129 52
130 67
131 74
132 56
133 63
134 52
135 72
136 65
137 48
138 48
139 54
140 45
141 43
142 60
143 47
144 46
145 45
146 55
147 35
148 43
149 55
150 34
151 49
152 30
153 36
154 46
155 30
156 30
157 35
158 44
159 42
160 26
161 31
162 26
163 29
164 22
165 39
166 32
167 37
168 23
169 24
170 19
171 28
172 22
173 30
174 22
175 20
176 20
177 32
178 22
179 12
180 26
181 22
182 12
183 13
184 22
185 23
186 18
187 18
188 18
189 14
190 19
191 15
192 20
193 18
194 21
195 10
196 20
197 19
198 19
199 11
200 25
201 18
202 18
203 21
204 16
205 22
206 20
207 16
208 12
209 11
210 19
211 15
212 18
213 13
214 11
215 19
216 13
217 12
218 11
219 16
220 9
221 15
222 9
223 18
224 7
225 14
226 10
227 16
228 7
229 14
230 12
231 9
232 11
233 9
234 12
235 10
236 12
237 7
238 4
239 4
240 9
241 9
242 8
243 15
244 4
245 5
246 7
247 12
248 6
249 3
250 5
251 8
252 6
253 2
254 9
255 10
256 4
257 3
258 6
259 4
260 4
261 6
262 5
263 5
264 10
265 8
266 8
267 8
268 6
269 6
270 12
271 8
272 5
273 4
274 7
275 6
276 5
277 7
278 5
279 5
280 4
281 5
282 6
283 4
284 4
285 4
286 3
287 5
288 6
289 4
290 6
291 4
292 3
293 4
294 1
295 2
296 4
297 4
298 7
299 2
300 9
301 5
302 6
303 7
304 5
305 7
306 4
307 3
308 4
309 2
310 2
311 5
312 2
313 5
314 3
315 4
316 4
318 3
320 7
321 7
322 7
323 1
324 3
325 6
326 1
327 3
328 3
329 2
330 4
331 4
332 1
333 4
334 4
335 1
336 3
337 4
338 3
340 3
341 1
342 2
344 3
345 5
346 3
347 2
348 3
349 1
350 2
351 4
352 5
353 4
354 1
355 1
356 1
357 1
358 3
359 5
361 1
362 4
363 4
364 3
365 3
367 2
368 4
369 3
370 1
371 2
374 3
375 1
376 2
378 1
379 1
380 3
382 4
383 2
384 4
385 2
386 2
387 1
388 2
389 1
390 3
391 3
392 1
393 2
394 1
395 2
396 1
397 3
398 1
399 1
400 2
401 1
402 1
403 1
404 1
405 2
406 1
407 2
408 3
410 4
413 3
414 1
418 1
420 1
421 1
422 3
423 1
424 3
425 3
427 1
428 2
434 2
436 2
438 1
439 3
441 1
442 4
443 1
444 1
445 2
447 1
449 1
450 1
451 1
453 2
456 1
457 3
458 2
460 2
461 2
463 1
465 1
468 1
469 1
471 2
472 1
473 2
474 1
477 3
479 1
480 2
483 1
484 1
486 2
487 1
490 3
492 2
493 1
494 1
496 2
498 1
505 2
507 2
511 1
512 1
516 1
519 1
522 1
524 1
526 2
527 2
529 2
531 1
533 1
535 2
536 1
538 1
540 1
541 2
543 1
544 1
546 3
553 2
554 1
557 1
559 1
560 2
562 4
563 1
566 1
574 1
577 2
578 1
580 1
585 1
588 1
589 1
591 1
593 1
597 1
602 1
605 1
606 1
609 1
610 4
611 1
612 2
614 1
616 1
617 2
619 1
623 1
625 1
626 1
627 1
628 2
630 1
635 1
636 3
641 1
649 1
662 1
664 1
668 1
669 1
673 1
675 1
679 1
682 1
688 1
689 1
700 1
711 2
721 1
724 1
725 1
726 1
729 1
731 1
732 1
735 1
748 1
749 1
759 1
790 1
795 1
796 1
801 1
805 1
807 1
814 1
820 1
821 1
823 1
844 1
845 1
862 1
864 1
870 1
901 1
921 2
924 1
971 1
975 1
977 1
989 1
1009 1
1014 1
1027 1
1041 1
1065 1
1066 1
1070 1
1090 1
1126 1
1135 1
1138 1
1139 1
1145 1
1157 1
1165 1
1183 1
1195 1
1205 1
1209 1
1229 1
1233 1
1257 1
1260 1
1262 1
1266 1
1271 1
1276 1
1277 1
1281 1
1296 2
1331 1
1343 1
1349 1
1377 1
1389 1
1408 1
1411 1
1414 1
1429 1
1432 1
1436 1
1440 1
1446 1
1452 1
1455 1
1491 2
1497 1
1501 1
1504 1
1505 1
1513 1
1527 1
1531 1
1535 2
1551 1
1570 1
1593 2
1615 1
1654 1
1697 1
1699 1
1704 1
1706 1
1713 1
1738 1
1770 1
1818 1
1827 1
1841 1
1863 1
1912 1
2066 1
2124 1
2154 1
2184 1
2209 1
2229 1
2344 1
2408 1
2610 1
2641 1
2645 1
2881 1
3118 1
3402 1
5000 1
5533 1
8057 1
8315 1
23872 1
828739 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._.......__._...._..._......___..._._...._._.._.....__._......._._._._
...._._._..._..._....._..._...._.____........_._.._...._._._..._.._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]