Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/0f71a0c154cf351fb20ae48f0bca50/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/90cad33d499ed20083d9e9d1a1babc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/90cad33d499ed20083d9e9d1a1babc/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292802799
unpaired = 5896264
MERGED PAIRED END READS = 292802799
MATES PROCESSED = 591501862
TOTAL READS     = 298699063
DISTINCT READS  = 1.14741e+08
DISTINCT COUNTS = 1005
MAX COUNT       = 1196887
COUNTS OF 1     = 5.12529e+07
MAX TERMS       = 100
OBSERVED COUNTS (1196888)
1	51252902
2	26824372
3	14776873
4	8247894
5	4719790
6	2797089
7	1724367
8	1108768
9	741390
10	516114
11	371323
12	274871
13	208788
14	163651
15	130519
16	105655
17	86505
18	72058
19	61039
20	51927
21	44646
22	39032
23	33889
24	30007
25	26270
26	23863
27	20957
28	18933
29	17146
30	15411
31	14005
32	12777
33	11917
34	10646
35	9896
36	9197
37	8440
38	7739
39	7156
40	6764
41	6159
42	5621
43	5408
44	5214
45	4773
46	4516
47	4221
48	4062
49	3632
50	3525
51	3292
52	3150
53	3017
54	2824
55	2687
56	2520
57	2350
58	2347
59	2158
60	2116
61	1958
62	1907
63	1863
64	1744
65	1637
66	1549
67	1500
68	1418
69	1457
70	1365
71	1257
72	1212
73	1218
74	1146
75	1085
76	1027
77	1040
78	990
79	940
80	893
81	858
82	850
83	774
84	728
85	705
86	738
87	691
88	699
89	662
90	620
91	628
92	558
93	612
94	581
95	516
96	505
97	561
98	496
99	503
100	482
101	438
102	472
103	417
104	429
105	386
106	390
107	363
108	374
109	361
110	334
111	338
112	335
113	300
114	331
115	314
116	279
117	283
118	276
119	300
120	281
121	254
122	234
123	248
124	280
125	237
126	248
127	240
128	195
129	228
130	213
131	187
132	202
133	175
134	183
135	189
136	209
137	190
138	173
139	170
140	172
141	153
142	163
143	158
144	150
145	144
146	138
147	146
148	132
149	149
150	127
151	145
152	135
153	137
154	136
155	124
156	115
157	121
158	125
159	116
160	106
161	94
162	90
163	110
164	100
165	103
166	95
167	90
168	109
169	76
170	93
171	90
172	89
173	74
174	93
175	100
176	108
177	74
178	89
179	88
180	87
181	85
182	67
183	70
184	61
185	79
186	72
187	68
188	75
189	76
190	70
191	60
192	59
193	57
194	74
195	50
196	69
197	64
198	55
199	57
200	56
201	61
202	48
203	62
204	55
205	59
206	56
207	62
208	58
209	41
210	51
211	58
212	46
213	42
214	46
215	44
216	42
217	43
218	46
219	36
220	42
221	44
222	43
223	44
224	45
225	35
226	47
227	36
228	28
229	34
230	38
231	40
232	40
233	43
234	46
235	25
236	31
237	38
238	23
239	29
240	29
241	28
242	36
243	29
244	38
245	33
246	28
247	31
248	29
249	29
250	36
251	25
252	35
253	35
254	17
255	22
256	33
257	18
258	22
259	41
260	31
261	26
262	26
263	32
264	26
265	26
266	16
267	33
268	21
269	23
270	29
271	22
272	20
273	21
274	22
275	26
276	24
277	20
278	24
279	17
280	19
281	14
282	18
283	17
284	23
285	24
286	19
287	15
288	23
289	16
290	14
291	25
292	16
293	14
294	28
295	16
296	18
297	11
298	11
299	17
300	15
301	22
302	22
303	12
304	16
305	19
306	17
307	14
308	7
309	10
310	13
311	10
312	15
313	9
314	18
315	15
316	21
317	21
318	16
319	9
320	12
321	13
322	11
323	7
324	9
325	12
326	8
327	11
328	15
329	9
330	15
331	19
332	14
333	10
334	8
335	11
336	12
337	11
338	8
339	12
340	13
341	9
342	6
343	7
344	8
345	9
346	9
347	13
348	7
349	4
350	9
351	11
352	10
353	8
354	7
355	8
356	9
357	9
358	13
359	17
360	11
361	10
362	6
363	10
364	11
365	6
366	9
367	12
368	11
369	7
370	8
371	8
372	9
373	6
374	5
375	9
376	6
377	4
378	4
379	5
380	6
381	7
382	2
383	7
384	4
385	9
386	3
387	13
388	4
389	12
390	7
391	8
392	7
393	4
394	8
395	8
396	8
397	5
398	6
399	8
400	7
401	5
402	8
403	8
404	8
405	6
406	6
407	11
408	9
409	6
410	7
411	6
412	5
413	6
414	6
415	6
416	6
417	5
418	7
419	11
420	13
421	8
422	8
423	5
424	4
425	8
426	5
427	5
428	4
429	8
430	6
431	6
432	4
433	6
434	4
435	4
436	4
437	4
438	2
439	4
440	6
441	7
442	4
443	7
444	6
445	5
446	3
447	6
448	1
449	5
450	2
451	4
452	5
453	2
454	3
455	3
456	2
457	4
458	4
459	5
460	2
461	7
462	4
463	5
464	5
465	6
466	5
467	3
468	4
469	4
470	1
471	4
472	5
473	5
474	5
476	2
477	5
478	9
479	5
480	1
481	3
482	4
483	2
484	4
485	4
486	4
487	5
488	4
489	3
490	3
491	4
492	1
493	3
494	8
495	1
496	4
497	2
498	2
499	5
500	2
501	3
502	2
503	6
504	1
505	4
506	4
507	2
508	3
509	2
510	4
511	6
512	4
513	1
514	3
515	2
516	3
517	1
518	3
519	4
520	3
521	2
522	6
523	3
524	3
526	5
527	3
528	2
529	4
530	3
531	2
532	4
533	1
534	2
535	1
536	4
538	1
539	1
540	1
541	1
542	2
543	1
544	3
545	2
546	2
547	5
549	4
550	4
551	2
552	1
553	1
554	3
555	2
556	5
557	4
558	3
559	4
560	4
563	3
564	1
565	6
566	4
567	3
568	1
569	1
571	1
572	4
573	2
574	2
575	1
577	2
578	1
579	2
580	3
581	2
583	2
584	1
585	2
586	2
587	2
590	1
593	1
594	1
595	4
598	4
599	1
600	1
601	1
602	3
603	2
604	2
605	3
606	1
607	2
608	1
609	2
610	1
611	1
612	3
613	2
614	3
615	2
616	3
617	2
618	1
619	4
620	2
621	1
622	3
623	1
624	9
625	2
626	2
627	1
628	1
630	2
631	2
632	2
633	2
634	2
635	1
637	5
638	2
639	2
641	1
642	3
643	1
644	1
645	2
648	1
649	1
651	2
652	5
653	3
654	2
655	4
656	2
657	1
658	2
660	3
662	1
663	2
665	2
666	2
667	2
669	1
670	1
671	1
672	1
673	1
674	1
675	2
676	1
678	1
679	1
680	1
682	2
683	1
684	3
685	2
686	1
687	2
688	1
689	2
690	1
693	3
694	4
696	2
697	1
698	1
702	2
703	1
704	2
705	4
706	1
707	2
708	1
709	1
710	3
711	1
712	3
713	2
715	2
716	1
717	1
719	4
720	1
721	2
722	1
723	3
727	2
730	1
731	1
733	1
734	1
741	1
743	4
744	1
746	1
748	2
749	1
750	1
751	1
754	1
755	3
756	3
757	1
758	1
760	1
764	2
765	1
766	2
769	2
770	1
773	1
777	2
778	1
779	1
784	1
785	2
788	1
796	1
797	1
799	1
801	1
802	1
806	2
809	2
810	1
812	1
814	1
815	1
816	1
820	2
821	1
823	2
827	1
828	1
829	1
830	1
836	1
837	1
838	1
840	1
841	1
844	2
845	1
846	1
848	1
849	1
850	3
851	2
854	1
860	1
861	1
863	1
867	2
871	2
873	2
875	2
877	1
881	1
882	1
885	1
886	1
888	1
890	1
892	1
893	1
901	1
903	1
907	1
908	1
909	1
910	2
913	1
914	1
922	1
923	1
930	1
933	1
935	1
937	1
939	1
947	1
949	1
953	1
955	1
959	1
961	1
966	3
969	1
975	2
978	1
981	1
983	1
984	2
985	1
986	1
989	1
993	2
995	2
1000	1
1003	1
1009	1
1012	1
1014	1
1020	1
1022	1
1026	1
1028	1
1029	1
1031	1
1035	1
1038	1
1041	1
1042	1
1043	1
1047	1
1049	1
1051	1
1055	1
1056	1
1058	1
1062	1
1064	1
1068	2
1070	1
1071	1
1078	1
1079	1
1080	1
1089	2
1097	1
1098	2
1101	1
1104	2
1113	1
1117	1
1124	1
1126	1
1129	1
1135	1
1141	1
1161	1
1165	1
1166	2
1170	1
1190	1
1193	1
1211	2
1222	1
1230	1
1231	1
1232	1
1233	1
1237	1
1239	1
1255	1
1260	2
1275	1
1288	1
1294	1
1298	1
1303	1
1306	1
1318	1
1321	1
1322	1
1334	1
1351	1
1357	1
1362	2
1381	1
1384	1
1389	1
1393	1
1404	1
1430	1
1442	1
1450	1
1478	1
1499	1
1534	1
1539	1
1544	1
1596	1
1614	1
1644	1
1655	1
1665	1
1676	1
1678	1
1717	1
1772	1
1776	1
1787	1
1796	1
1824	1
1828	1
1830	1
1835	1
1836	2
1840	1
1845	1
1847	1
1859	1
1875	1
1891	1
1906	1
1909	1
1923	1
1924	1
1930	1
1957	1
1959	1
1971	1
1990	1
1993	1
1997	1
1999	1
2005	1
2012	1
2014	1
2017	1
2021	1
2022	1
2056	1
2062	1
2064	1
2068	1
2075	1
2081	1
2099	1
2188	1
2190	1
2213	1
2225	2
2226	1
2248	1
2259	2
2295	1
2305	1
2306	1
2311	1
2314	1
2317	1
2326	1
2353	1
2386	1
2387	1
2392	1
2409	1
2465	2
2473	1
2482	1
2511	1
2517	1
2527	1
2539	2
2574	1
2588	1
2602	1
2603	1
2708	1
2731	1
2777	2
2798	1
2816	1
2842	1
2875	1
2897	1
2905	1
2925	1
2972	1
2973	1
2982	1
3036	1
3112	1
3190	1
3257	1
3265	1
3281	1
3300	1
3328	1
3355	1
3390	1
3507	1
3668	1
3810	1
3908	1
3947	1
4220	1
4261	1
4508	1
4679	1
4978	1
5697	1
5729	1
5828	1
6423	1
6564	1
7206	1
8907	1
10383	1
23817	1
1196887	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._...._....._..........._..............._...................._..........
....._...........__.........._...._....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]