#!/bin/bash -euo pipefail
cat FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L001_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L002_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L003_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L004_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L005_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L006_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L007_R1_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L008_R1_001.fastq.gz > FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_R1.fastq.gz
cat FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L001_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L002_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L003_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L004_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L005_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L006_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L007_R2_001.fastq.gz FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_S11_L008_R2_001.fastq.gz > FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS