Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00594_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00594_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:50:41.329 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:50:41 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00594_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00594_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:50:41 GMT 2026] Executing as ?@nf-907968f7ae91d7fddf024343f7ee8b0b-7f649-blnjz on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:50:41 MarkDuplicates Start of doWork freeMemory: 105495144; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:50:41 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:50:41 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,319,441
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 3526 as yet unmatched pairs. 577 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,787,007
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 7954 as yet unmatched pairs. 2007 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,467,901
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 10630 as yet unmatched pairs. 1530 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,717,022
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 11931 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,823,754
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 14644 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:15,847,990
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 17585 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:17,282,926
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 20127 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:19,623,484
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 24465 as yet unmatched pairs. 1786 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:21,824,139
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 26584 as yet unmatched pairs. 1235 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:22,781,419
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 29267 as yet unmatched pairs. 1040 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:24,134,370
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 31167 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:26,551,395
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 34558 as yet unmatched pairs. 995 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:27,960,296
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 36467 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:31,584,725
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 40234 as yet unmatched pairs. 1219 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:32,772,862
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 42835 as yet unmatched pairs. 1057 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:35,506,868
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 45149 as yet unmatched pairs. 512 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:39,105,686
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 47929 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:40,997,517
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 50477 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:43,588,835
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 54516 as yet unmatched pairs. 1734 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:45,009,657
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 56074 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:46,303,775
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 59213 as yet unmatched pairs. 1053 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:52,907,908
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 61661 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:58,767,508
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 63633 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:70,221,783
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 66638 as yet unmatched pairs. 676 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:89,053,448
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 68610 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:100,921,737
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 70972 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:110,018,515
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 73928 as yet unmatched pairs. 899 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:113,653,843
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 76346 as yet unmatched pairs. 771 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:116,393,619
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 81598 as yet unmatched pairs. 3651 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:119,997,180
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 81051 as yet unmatched pairs. 590 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:146,989,593
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 82482 as yet unmatched pairs. 626 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,354
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 87112 as yet unmatched pairs. 3588 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,863
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 88145 as yet unmatched pairs. 2719 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:151,365,782
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 92779 as yet unmatched pairs. 4814 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,665,306
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 91769 as yet unmatched pairs. 1107 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,025
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 96312 as yet unmatched pairs. 3195 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,059,937
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 97334 as yet unmatched pairs. 1438 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,480,887
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 98556 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,020
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 105486 as yet unmatched pairs. 4497 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,786,723
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 104391 as yet unmatched pairs. 479 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:161,000,328
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 107786 as yet unmatched pairs. 1251 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:167,069,033
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 110183 as yet unmatched pairs. 1307 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:171,107,674
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 111556 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:179,851,174
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 114181 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:183,635,516
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 117245 as yet unmatched pairs. 813 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:200,857,396
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 118843 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:202,014,014
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 122348 as yet unmatched pairs. 832 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:204,440,304
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 124769 as yet unmatched pairs. 703 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:206,931,497
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 136375 as yet unmatched pairs. 9787 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,467
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 159116 as yet unmatched pairs. 29618 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,186
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 151741 as yet unmatched pairs. 19332 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:206,940,504
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 150722 as yet unmatched pairs. 15820 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:212,858,534
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 137829 as yet unmatched pairs. 499 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:225,404,636
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 141010 as yet unmatched pairs. 1401 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:228,147,418
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 146521 as yet unmatched pairs. 4433 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,172
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 148036 as yet unmatched pairs. 2759 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:244,858,168
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 149780 as yet unmatched pairs. 1882 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:8,731,229
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 151034 as yet unmatched pairs. 149519 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:14,634,198
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 161737 as yet unmatched pairs. 160202 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:24,299,916
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 156275 as yet unmatched pairs. 154703 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:27,213,162
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 159444 as yet unmatched pairs. 157865 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:29,181,572
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 161733 as yet unmatched pairs. 160142 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,260
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 220062 as yet unmatched pairs. 157578 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 781619 as yet unmatched pairs. 120009 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,397
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1325506 as yet unmatched pairs. 83646 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 1355308 as yet unmatched pairs. 81774 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,489
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1444555 as yet unmatched pairs. 76163 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:42,351,278
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1443065 as yet unmatched pairs. 74620 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,767
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 1441468 as yet unmatched pairs. 72979 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:54,623,570
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1437851 as yet unmatched pairs. 69338 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:54,973,091
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1434869 as yet unmatched pairs. 66334 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:64,096,476
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1432322 as yet unmatched pairs. 63749 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:70,300,850
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1430558 as yet unmatched pairs. 61937 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:74,455,563
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 1427450 as yet unmatched pairs. 58801 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:84,880,927
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1424843 as yet unmatched pairs. 56175 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:86,765,118
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1422134 as yet unmatched pairs. 53457 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,613
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1422784 as yet unmatched pairs. 54075 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:97,585,087
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1417994 as yet unmatched pairs. 49275 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:106,093,915
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1415271 as yet unmatched pairs. 46532 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:110,091,736
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1417433 as yet unmatched pairs. 48661 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:113,931,334
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1412915 as yet unmatched pairs. 44125 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:127,726,753
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 1409457 as yet unmatched pairs. 40634 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:144,007,524
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 1406720 as yet unmatched pairs. 37844 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:161,318,858
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 1404653 as yet unmatched pairs. 35734 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:172,491,225
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1402744 as yet unmatched pairs. 33765 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:181,892,619
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 1400975 as yet unmatched pairs. 31959 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:189,085,763
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 1397526 as yet unmatched pairs. 28487 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:197,490,267
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 1396595 as yet unmatched pairs. 27534 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:202,555,818
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1392848 as yet unmatched pairs. 23753 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,526
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1392632 as yet unmatched pairs. 23513 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:216,138,128
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 1388806 as yet unmatched pairs. 19679 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:218,431,798
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 1387547 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:219,539,900
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 1383975 as yet unmatched pairs. 14822 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:230,464,032
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 1380088 as yet unmatched pairs. 10911 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:231,461,762
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 1379173 as yet unmatched pairs. 9988 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:237,344,535
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 1375401 as yet unmatched pairs. 6193 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:240,616,451
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 1373150 as yet unmatched pairs. 3894 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 3s. Last read position: chr3:4,410,886
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 1369723 as yet unmatched pairs. 72913 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:10,249,414
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1367184 as yet unmatched pairs. 70347 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:15,095,889
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1363966 as yet unmatched pairs. 67109 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:33,129,939
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 1361753 as yet unmatched pairs. 64856 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:39,407,752
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1361459 as yet unmatched pairs. 64544 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:43,340,308
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1356616 as yet unmatched pairs. 59668 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:47,057,323
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 1353846 as yet unmatched pairs. 56882 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,915
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 1351627 as yet unmatched pairs. 54633 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:48,661,778
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1347795 as yet unmatched pairs. 50782 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:49,132,520
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 1345852 as yet unmatched pairs. 48824 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:49,902,693
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 1344017 as yet unmatched pairs. 46960 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:51,936,266
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 1339830 as yet unmatched pairs. 42747 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:52,679,629
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 1337007 as yet unmatched pairs. 39896 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:58,103,997
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 1335762 as yet unmatched pairs. 38634 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:64,022,337
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 1332553 as yet unmatched pairs. 35380 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:100,339,838
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 1329836 as yet unmatched pairs. 32632 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:114,103,341
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 1327452 as yet unmatched pairs. 30231 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:123,500,525
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 1325688 as yet unmatched pairs. 28440 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:127,660,434
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1323484 as yet unmatched pairs. 26222 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:129,381,293
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 1319916 as yet unmatched pairs. 22621 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:138,759,217
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 1317688 as yet unmatched pairs. 20379 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,061
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 1315648 as yet unmatched pairs. 18300 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:168,044,846
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 1313818 as yet unmatched pairs. 16429 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:182,867,394
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 1310821 as yet unmatched pairs. 13367 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:184,325,947
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1309806 as yet unmatched pairs. 12324 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:188,866,249
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 1307350 as yet unmatched pairs. 9848 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,338
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 1304794 as yet unmatched pairs. 7242 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,758
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 1309718 as yet unmatched pairs. 12134 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,388
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 1308284 as yet unmatched pairs. 10698 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:196,072,080
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1301280 as yet unmatched pairs. 3672 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:958,409
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 1296833 as yet unmatched pairs. 30045 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr4:2,756,213
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 1293490 as yet unmatched pairs. 26679 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr4:8,236,341
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 1290951 as yet unmatched pairs. 24114 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:26,781,554
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 1288311 as yet unmatched pairs. 21439 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:48,833,437
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1286810 as yet unmatched pairs. 19902 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:70,656,197
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 1284751 as yet unmatched pairs. 17824 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:74,449,065
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 1281599 as yet unmatched pairs. 14654 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:83,094,697
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 1285988 as yet unmatched pairs. 19003 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:102,826,591
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 1276286 as yet unmatched pairs. 9235 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:124,710,407
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 1274034 as yet unmatched pairs. 6965 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:150,900,002
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 1271718 as yet unmatched pairs. 4624 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:169,707,096
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 1270149 as yet unmatched pairs. 3006 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr5:256,508
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 1267231 as yet unmatched pairs. 59591 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 3s. Last read position: chr5:10,256,037
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 1265353 as yet unmatched pairs. 57700 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:14,496,985
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 1262591 as yet unmatched pairs. 54922 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr5:36,976,118
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 1259358 as yet unmatched pairs. 51645 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,518
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 1257598 as yet unmatched pairs. 49857 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:70,049,675
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 1254733 as yet unmatched pairs. 46984 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:76,832,928
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 1253134 as yet unmatched pairs. 45369 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:95,514,867
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 1250518 as yet unmatched pairs. 42724 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:112,259,229
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 1247890 as yet unmatched pairs. 40071 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:128,114,353
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 1247894 as yet unmatched pairs. 40054 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:132,866,678
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1243716 as yet unmatched pairs. 35855 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:136,049,494
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 1241016 as yet unmatched pairs. 33127 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:139,322,919
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 1238812 as yet unmatched pairs. 30899 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:141,318,941
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 1235213 as yet unmatched pairs. 27273 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:145,796,456
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 1233311 as yet unmatched pairs. 25350 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,259
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 1230434 as yet unmatched pairs. 22444 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,286
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1243172 as yet unmatched pairs. 35161 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:151,799,987
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1226368 as yet unmatched pairs. 18344 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:160,620,477
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 1224290 as yet unmatched pairs. 16252 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:171,405,302
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 1221753 as yet unmatched pairs. 13696 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:177,097,324
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 1218119 as yet unmatched pairs. 10048 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,197
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 1216683 as yet unmatched pairs. 8578 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,978
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 1231533 as yet unmatched pairs. 23384 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:179,899,260
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 1210442 as yet unmatched pairs. 2273 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:3,110,826
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 1206959 as yet unmatched pairs. 70056 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:7,576,963
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 1204823 as yet unmatched pairs. 67896 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:17,764,035
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 1202103 as yet unmatched pairs. 65163 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,439
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 1199496 as yet unmatched pairs. 62531 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:27,831,206
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 1198839 as yet unmatched pairs. 61850 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,074
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 1200800 as yet unmatched pairs. 63792 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:30,684,847
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 1192303 as yet unmatched pairs. 55270 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,769
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 1200298 as yet unmatched pairs. 63259 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,643,076
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 1191540 as yet unmatched pairs. 54477 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,114
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 1186873 as yet unmatched pairs. 49802 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,947,440
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 1182738 as yet unmatched pairs. 45641 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:32,840,896
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 1179888 as yet unmatched pairs. 42777 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:33,305,224
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 1180340 as yet unmatched pairs. 43217 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:34,417,466
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 1174039 as yet unmatched pairs. 36901 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:36,985,848
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 1174218 as yet unmatched pairs. 37059 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:43,058,188
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 1169079 as yet unmatched pairs. 31896 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:44,251,536
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 1167080 as yet unmatched pairs. 29883 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:56,458,888
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 1163516 as yet unmatched pairs. 26250 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:75,087,676
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 1161998 as yet unmatched pairs. 24698 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:85,637,351
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 1159971 as yet unmatched pairs. 22642 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:106,519,823
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 1157150 as yet unmatched pairs. 19807 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:110,893,598
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 1154254 as yet unmatched pairs. 16883 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:127,981,190
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 1151616 as yet unmatched pairs. 14234 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:136,267,162
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 1149286 as yet unmatched pairs. 11896 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:143,507,255
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 1147287 as yet unmatched pairs. 9871 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:156,829,397
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 1144590 as yet unmatched pairs. 7148 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,190
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 1148042 as yet unmatched pairs. 10578 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:166,952,490
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 1141611 as yet unmatched pairs. 4114 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:895,381
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 1137164 as yet unmatched pairs. 112379 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:2,375,397
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 1135175 as yet unmatched pairs. 110355 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr7:5,332,808
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 1131402 as yet unmatched pairs. 106555 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,004
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 1142779 as yet unmatched pairs. 117902 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,534
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 1135988 as yet unmatched pairs. 111092 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:7,606,017
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 1121259 as yet unmatched pairs. 96351 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:26,192,331
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 1120443 as yet unmatched pairs. 95509 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr7:30,595,056
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 1117422 as yet unmatched pairs. 92459 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:42,917,493
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1114466 as yet unmatched pairs. 89477 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:44,693,877
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 1111875 as yet unmatched pairs. 86854 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:50,463,263
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 1109133 as yet unmatched pairs. 84087 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:65,006,334
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 1105903 as yet unmatched pairs. 80807 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,583
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 1105826 as yet unmatched pairs. 80710 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:74,356,432
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 1102207 as yet unmatched pairs. 77075 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:76,054,905
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 1101811 as yet unmatched pairs. 76666 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:88,206,383
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 1097501 as yet unmatched pairs. 72334 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:94,424,408
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 1096633 as yet unmatched pairs. 71450 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:99,400,320
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 1092118 as yet unmatched pairs. 66926 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,478,046
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 1089549 as yet unmatched pairs. 64341 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,990,790
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 1091265 as yet unmatched pairs. 66033 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,556
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 1088852 as yet unmatched pairs. 63604 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,015
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 1094848 as yet unmatched pairs. 69600 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,425
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 1098509 as yet unmatched pairs. 73259 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,688
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 1100852 as yet unmatched pairs. 75599 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,898
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 1101391 as yet unmatched pairs. 76138 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,326
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 1094372 as yet unmatched pairs. 69115 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,756
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 1102614 as yet unmatched pairs. 77354 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,978
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 1100868 as yet unmatched pairs. 75608 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,210
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 1103247 as yet unmatched pairs. 77987 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,693
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 1113174 as yet unmatched pairs. 87914 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,061
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 1103362 as yet unmatched pairs. 78102 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,256
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 1111576 as yet unmatched pairs. 86316 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,379
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 1182931 as yet unmatched pairs. 157671 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,491
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 1148340 as yet unmatched pairs. 123076 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,724
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 1139362 as yet unmatched pairs. 114097 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,845
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 1184609 as yet unmatched pairs. 159344 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,998
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 1130963 as yet unmatched pairs. 105692 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,198
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 1102568 as yet unmatched pairs. 77295 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,479
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 1169800 as yet unmatched pairs. 144523 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,611
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 1106675 as yet unmatched pairs. 81385 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,890
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 1143796 as yet unmatched pairs. 118504 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,045
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 1111738 as yet unmatched pairs. 86444 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,291
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 1099630 as yet unmatched pairs. 74336 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,457
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 1100450 as yet unmatched pairs. 75156 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,630
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 1187684 as yet unmatched pairs. 162390 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,786
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 1120473 as yet unmatched pairs. 95179 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,929
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 1103611 as yet unmatched pairs. 78317 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,228
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 1116249 as yet unmatched pairs. 90955 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,558
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 1154028 as yet unmatched pairs. 128732 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,786
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 1169349 as yet unmatched pairs. 144051 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,969
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 1142593 as yet unmatched pairs. 117283 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,192
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 1144322 as yet unmatched pairs. 119012 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,441
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 1179476 as yet unmatched pairs. 154166 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,695
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 1154219 as yet unmatched pairs. 128908 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,882
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 1165507 as yet unmatched pairs. 140189 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,036
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 1123185 as yet unmatched pairs. 97851 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,326
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 1173112 as yet unmatched pairs. 147770 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,459
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 1093596 as yet unmatched pairs. 68254 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,579
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 1091095 as yet unmatched pairs. 65753 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,794
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 1093092 as yet unmatched pairs. 67750 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,086
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 1091796 as yet unmatched pairs. 66453 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,375
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 1123038 as yet unmatched pairs. 97693 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,588
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 1082837 as yet unmatched pairs. 57487 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,994
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 1085118 as yet unmatched pairs. 59763 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,705
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 1055081 as yet unmatched pairs. 29725 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,027
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 1053184 as yet unmatched pairs. 27828 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,012,854
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 1057534 as yet unmatched pairs. 32162 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:102,493,149
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 1049339 as yet unmatched pairs. 23958 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:106,091,889
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 1048733 as yet unmatched pairs. 23325 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr7:107,960,641
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 1045640 as yet unmatched pairs. 20207 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr7:123,696,578
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 1043446 as yet unmatched pairs. 17972 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:128,580,018
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 1041670 as yet unmatched pairs. 16179 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:137,903,979
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 1038981 as yet unmatched pairs. 13463 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:140,734,617
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 1036249 as yet unmatched pairs. 10698 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:144,364,136
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 1033725 as yet unmatched pairs. 8152 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:150,793,963
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 1032812 as yet unmatched pairs. 7216 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr7:152,136,781
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 1027925 as yet unmatched pairs. 2306 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr8:6,643,149
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 1025191 as yet unmatched pairs. 55682 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:21,984,741
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 1022713 as yet unmatched pairs. 53184 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr8:24,294,080
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 1019870 as yet unmatched pairs. 50322 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:33,558,709
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 1017526 as yet unmatched pairs. 47969 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 59s. Last read position: chr8:39,023,201
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 1014986 as yet unmatched pairs. 45419 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:47,939,551
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 1013060 as yet unmatched pairs. 43483 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:61,680,982
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 1012134 as yet unmatched pairs. 42532 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr8:72,071,748
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 1007668 as yet unmatched pairs. 38047 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:94,128,278
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 1011455 as yet unmatched pairs. 41807 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:98,190,150
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 1003004 as yet unmatched pairs. 33344 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:100,925,016
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 1004961 as yet unmatched pairs. 35266 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:118,110,976
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 999057 as yet unmatched pairs. 29325 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,658
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 1002704 as yet unmatched pairs. 32951 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr8:142,664,687
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 993058 as yet unmatched pairs. 23265 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,795,470
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 990350 as yet unmatched pairs. 20535 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,894
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 988603 as yet unmatched pairs. 18787 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,193
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 987393 as yet unmatched pairs. 17577 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,634
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 987322 as yet unmatched pairs. 17495 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,497
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 984942 as yet unmatched pairs. 15112 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,329
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 982636 as yet unmatched pairs. 12803 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,986,153
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 977031 as yet unmatched pairs. 7182 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,094
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 975767 as yet unmatched pairs. 5915 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:145,052,629
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 971440 as yet unmatched pairs. 1578 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr9:14,868,912
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 967977 as yet unmatched pairs. 46784 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr9:33,797,954
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 965764 as yet unmatched pairs. 44532 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:35,714,317
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 963116 as yet unmatched pairs. 41868 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr9:69,254,207
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 960610 as yet unmatched pairs. 39336 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:86,352,831
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 958045 as yet unmatched pairs. 36741 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:93,561,197
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 955411 as yet unmatched pairs. 34093 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:100,098,795
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 953245 as yet unmatched pairs. 31889 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:111,383,273
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 950414 as yet unmatched pairs. 29022 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,988
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 948143 as yet unmatched pairs. 26734 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:125,149,655
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 945212 as yet unmatched pairs. 23781 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:127,886,635
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 942560 as yet unmatched pairs. 21117 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:128,582,700
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 940459 as yet unmatched pairs. 19008 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:130,076,342
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 936736 as yet unmatched pairs. 15269 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr9:131,625,957
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 934782 as yet unmatched pairs. 13298 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,774,857
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 932131 as yet unmatched pairs. 10635 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,515,623
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 929541 as yet unmatched pairs. 8017 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:137,106,688
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 925875 as yet unmatched pairs. 4334 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:137,717,131
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 922564 as yet unmatched pairs. 1016 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr10:5,936,568
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 919538 as yet unmatched pairs. 48936 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr10:18,674,111
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 916985 as yet unmatched pairs. 46364 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:32,015,537
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 916682 as yet unmatched pairs. 46040 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,590
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 913080 as yet unmatched pairs. 42418 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:50,091,432
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 910303 as yet unmatched pairs. 39621 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:69,103,953
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 908554 as yet unmatched pairs. 37855 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:73,376,068
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 906263 as yet unmatched pairs. 35537 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:77,816,612
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 902798 as yet unmatched pairs. 32061 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:84,214,286
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 900804 as yet unmatched pairs. 30057 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:92,974,205
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 897697 as yet unmatched pairs. 26939 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:96,949,063
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 895402 as yet unmatched pairs. 24625 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:100,913,184
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 892833 as yet unmatched pairs. 22042 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:102,488,154
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 890293 as yet unmatched pairs. 19479 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr10:111,004,712
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 887568 as yet unmatched pairs. 16734 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:117,374,829
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 885569 as yet unmatched pairs. 14712 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:122,570,176
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 894669 as yet unmatched pairs. 23795 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:122,586,068
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 889547 as yet unmatched pairs. 18669 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr10:122,595,609
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 887064 as yet unmatched pairs. 16181 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:122,605,063
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 884635 as yet unmatched pairs. 13743 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:122,611,238
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 880110 as yet unmatched pairs. 9218 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:122,631,227
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 885950 as yet unmatched pairs. 15043 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:128,103,451
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 873501 as yet unmatched pairs. 2580 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr11:289,987
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 871182 as yet unmatched pairs. 120665 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:320,679
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 877249 as yet unmatched pairs. 126720 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:608,568
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 865136 as yet unmatched pairs. 114601 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:763,812
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 861883 as yet unmatched pairs. 111340 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,082,545
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 860255 as yet unmatched pairs. 109687 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,483
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 856406 as yet unmatched pairs. 105810 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,064
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 856434 as yet unmatched pairs. 105836 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,258,961
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 853868 as yet unmatched pairs. 103268 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:2,572,047
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 850630 as yet unmatched pairs. 100023 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr11:6,217,711
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 847294 as yet unmatched pairs. 96674 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,839
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 848296 as yet unmatched pairs. 97672 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:11,271,125
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 841571 as yet unmatched pairs. 90941 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:17,169,651
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 838988 as yet unmatched pairs. 88330 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:27,385,299
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 837352 as yet unmatched pairs. 86677 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:35,139,323
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 839096 as yet unmatched pairs. 88400 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr11:46,307,854
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 834047 as yet unmatched pairs. 83324 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:47,274,823
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 829695 as yet unmatched pairs. 78960 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:57,491,766
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 826594 as yet unmatched pairs. 75849 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:59,610,532
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 824392 as yet unmatched pairs. 73638 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:61,790,512
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 821364 as yet unmatched pairs. 70594 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,034
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 820372 as yet unmatched pairs. 69584 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,570
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 819277 as yet unmatched pairs. 68478 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,789,627
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 814719 as yet unmatched pairs. 63906 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:64,227,606
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 812330 as yet unmatched pairs. 61490 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:64,340,954
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 810177 as yet unmatched pairs. 59328 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,542
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 805309 as yet unmatched pairs. 54445 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,797
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 809039 as yet unmatched pairs. 58171 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,591,977
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 798596 as yet unmatched pairs. 47643 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,945
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 798787 as yet unmatched pairs. 47822 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:66,341,538
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 792297 as yet unmatched pairs. 41315 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:67,279,199
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 789875 as yet unmatched pairs. 38867 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:67,585,210
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 790343 as yet unmatched pairs. 39321 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:68,551,123
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 783771 as yet unmatched pairs. 32732 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:70,422,957
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 782544 as yet unmatched pairs. 31489 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:72,232,301
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 778507 as yet unmatched pairs. 27444 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr11:75,193,353
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 775701 as yet unmatched pairs. 24615 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:78,124,093
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 772402 as yet unmatched pairs. 21310 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:93,750,376
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 769860 as yet unmatched pairs. 18752 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:102,840,166
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 769048 as yet unmatched pairs. 17922 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:112,088,968
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 767773 as yet unmatched pairs. 16633 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr11:117,282,807
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 762751 as yet unmatched pairs. 11594 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:118,899,113
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 760255 as yet unmatched pairs. 9083 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:121,557,303
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 757664 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:126,408,313
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 754983 as yet unmatched pairs. 3798 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:130,200,064
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 756286 as yet unmatched pairs. 5053 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 3s. Last read position: chr12:1,965,593
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 749509 as yet unmatched pairs. 73496 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:6,329,942
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 747325 as yet unmatched pairs. 71285 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,766,676
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 744849 as yet unmatched pairs. 68800 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:8,049,424
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 741836 as yet unmatched pairs. 65776 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,585
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 744765 as yet unmatched pairs. 68667 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:22,525,688
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 737316 as yet unmatched pairs. 61199 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:43,772,921
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 734671 as yet unmatched pairs. 58523 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:48,941,032
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 733051 as yet unmatched pairs. 56889 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,269,914
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 732208 as yet unmatched pairs. 56033 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:50,995,727
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 727802 as yet unmatched pairs. 51610 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,769
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 740474 as yet unmatched pairs. 64245 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:53,309,219
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 722579 as yet unmatched pairs. 46330 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:54,340,546
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 721099 as yet unmatched pairs. 44839 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:56,128,471
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 718354 as yet unmatched pairs. 42090 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:56,602,139
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 715509 as yet unmatched pairs. 39233 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,717
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 716069 as yet unmatched pairs. 39785 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:57,193,933
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 713073 as yet unmatched pairs. 36775 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,716,445
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 709612 as yet unmatched pairs. 33299 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:68,611,003
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 705596 as yet unmatched pairs. 29275 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:79,690,185
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 703451 as yet unmatched pairs. 27115 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:98,594,034
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 703438 as yet unmatched pairs. 27084 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:104,339,195
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 700042 as yet unmatched pairs. 23664 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:110,339,669
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 697841 as yet unmatched pairs. 21455 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:112,405,325
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 694793 as yet unmatched pairs. 18389 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:116,008,717
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 691220 as yet unmatched pairs. 14805 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:120,224,256
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 689109 as yet unmatched pairs. 12680 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:122,130,849
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 688548 as yet unmatched pairs. 12102 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:123,586,907
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 684565 as yet unmatched pairs. 8107 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:130,872,588
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 683114 as yet unmatched pairs. 6647 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:132,782,332
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 677861 as yet unmatched pairs. 1391 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr13:24,222,941
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 675958 as yet unmatched pairs. 27449 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr13:27,968,466
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 676135 as yet unmatched pairs. 27610 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr13:37,580,623
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 669825 as yet unmatched pairs. 21256 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr13:45,338,705
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 673843 as yet unmatched pairs. 25261 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr13:51,942,477
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 664941 as yet unmatched pairs. 16349 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr13:75,834,244
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 662626 as yet unmatched pairs. 14021 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr13:98,424,618
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 660366 as yet unmatched pairs. 11752 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr13:109,782,559
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 657479 as yet unmatched pairs. 8851 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr13:110,424,859
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 656186 as yet unmatched pairs. 7543 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr13:112,785,135
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 651417 as yet unmatched pairs. 2767 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr14:20,383,178
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 648653 as yet unmatched pairs. 54920 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:22,841,933
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 646127 as yet unmatched pairs. 52379 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:23,959,903
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 643365 as yet unmatched pairs. 49610 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:24,372,558
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 640482 as yet unmatched pairs. 46726 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:35,808,771
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 638658 as yet unmatched pairs. 44877 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:52,038,863
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 635873 as yet unmatched pairs. 41974 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:55,658,578
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 635068 as yet unmatched pairs. 41155 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:64,431,792
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 631341 as yet unmatched pairs. 37408 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,104
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 629302 as yet unmatched pairs. 35361 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:73,543,500
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 626071 as yet unmatched pairs. 32110 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr14:76,154,668
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 623627 as yet unmatched pairs. 29663 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 3s. Last read position: chr14:91,485,648
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 621142 as yet unmatched pairs. 27158 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:96,241,162
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 618703 as yet unmatched pairs. 24705 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr14:102,033,395
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 616267 as yet unmatched pairs. 22251 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:103,519,861
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 624967 as yet unmatched pairs. 30937 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:104,701,710
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 610930 as yet unmatched pairs. 16887 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,380,999
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 607001 as yet unmatched pairs. 12953 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,848
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 617862 as yet unmatched pairs. 23806 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,197
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 606513 as yet unmatched pairs. 12448 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,363
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 656627 as yet unmatched pairs. 62560 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,080
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 619448 as yet unmatched pairs. 25378 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,211
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 599305 as yet unmatched pairs. 5223 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:27,871,189
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 593459 as yet unmatched pairs. 37240 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:38,090,157
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 591236 as yet unmatched pairs. 35016 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr15:40,779,272
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 588473 as yet unmatched pairs. 32234 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:42,450,936
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 585790 as yet unmatched pairs. 29550 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,807
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 588595 as yet unmatched pairs. 32347 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:45,109,918
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 585462 as yet unmatched pairs. 29200 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:51,464,775
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 578361 as yet unmatched pairs. 22097 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:60,468,113
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 575914 as yet unmatched pairs. 19645 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:65,579,465
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 573496 as yet unmatched pairs. 17219 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:72,208,623
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 572366 as yet unmatched pairs. 16078 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:74,926,800
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 570488 as yet unmatched pairs. 14193 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr15:78,270,545
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 565211 as yet unmatched pairs. 8907 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:84,783,792
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 563028 as yet unmatched pairs. 6714 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:89,792,168
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 561825 as yet unmatched pairs. 5506 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr15:92,104,302
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 558065 as yet unmatched pairs. 1740 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr16:293,646
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 555696 as yet unmatched pairs. 98937 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:715,259
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 552059 as yet unmatched pairs. 95295 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:1,777,184
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 549924 as yet unmatched pairs. 93154 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:2,170,721
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 545887 as yet unmatched pairs. 89113 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:2,765,256
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 544104 as yet unmatched pairs. 87326 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr16:3,068,190
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 541888 as yet unmatched pairs. 85108 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:4,694,029
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 536970 as yet unmatched pairs. 80189 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:11,839,771
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 533992 as yet unmatched pairs. 77194 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:14,876,690
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 533930 as yet unmatched pairs. 77132 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:15,030,011
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 532435 as yet unmatched pairs. 75627 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:16,122,072
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 528631 as yet unmatched pairs. 71813 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:16,324,440
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 527961 as yet unmatched pairs. 71139 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,885
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 527255 as yet unmatched pairs. 70430 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:18,499,980
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 526653 as yet unmatched pairs. 69824 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:18,829,989
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 523719 as yet unmatched pairs. 66885 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:19,545,840
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 520627 as yet unmatched pairs. 63784 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,400
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 522711 as yet unmatched pairs. 65868 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,482
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 520670 as yet unmatched pairs. 63820 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr16:22,478,649
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 516557 as yet unmatched pairs. 59704 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,060
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 516395 as yet unmatched pairs. 59541 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:24,793,584
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 513567 as yet unmatched pairs. 56703 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:28,379,752
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 513391 as yet unmatched pairs. 56520 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:28,608,568
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 509338 as yet unmatched pairs. 52459 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:28,844,942
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 508368 as yet unmatched pairs. 51484 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,884
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 508016 as yet unmatched pairs. 51123 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,811
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 505243 as yet unmatched pairs. 48349 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,202
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 502048 as yet unmatched pairs. 45150 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,017
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 505085 as yet unmatched pairs. 48186 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,486
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 495635 as yet unmatched pairs. 38733 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,655,194
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 493457 as yet unmatched pairs. 36541 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:30,925,790
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 490963 as yet unmatched pairs. 34013 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,220
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 488268 as yet unmatched pairs. 31308 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr16:47,313,790
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 486195 as yet unmatched pairs. 29224 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 2s. Last read position: chr16:52,439,625
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 482685 as yet unmatched pairs. 25690 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr16:57,041,985
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 480898 as yet unmatched pairs. 23892 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:66,622,012
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 477151 as yet unmatched pairs. 20141 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:67,878,997
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 474011 as yet unmatched pairs. 16992 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr16:69,711,012
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 472394 as yet unmatched pairs. 15366 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,695
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 468626 as yet unmatched pairs. 11593 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:82,068,372
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 465906 as yet unmatched pairs. 8869 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:88,430,303
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 463054 as yet unmatched pairs. 6009 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr16:89,282,878
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 459927 as yet unmatched pairs. 2880 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr17:710,608
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 457062 as yet unmatched pairs. 127993 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr17:1,675,178
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 455196 as yet unmatched pairs. 126118 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:3,950,534
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 451788 as yet unmatched pairs. 122686 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,721
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 453118 as yet unmatched pairs. 124012 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,241,355
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 447966 as yet unmatched pairs. 118860 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,577,458
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 444951 as yet unmatched pairs. 115840 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:12,894,969
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 440937 as yet unmatched pairs. 111825 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:17,496,065
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 438189 as yet unmatched pairs. 109075 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr17:21,004,271
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 435980 as yet unmatched pairs. 106865 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:28,632,942
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 434306 as yet unmatched pairs. 105179 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr17:29,166,317
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 431745 as yet unmatched pairs. 102617 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:31,863,475
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 427964 as yet unmatched pairs. 98834 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:35,766,590
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 425019 as yet unmatched pairs. 95887 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:37,614,223
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 422836 as yet unmatched pairs. 93702 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 2s. Last read position: chr17:38,850,449
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 426669 as yet unmatched pairs. 97526 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,133
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 422427 as yet unmatched pairs. 93284 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:40,022,457
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 416536 as yet unmatched pairs. 87393 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,811
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 414642 as yet unmatched pairs. 85488 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:42,021,643
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 410154 as yet unmatched pairs. 80995 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:42,672,280
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 406859 as yet unmatched pairs. 77699 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr17:44,197,288
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 404729 as yet unmatched pairs. 75568 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:45,116,660
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 401730 as yet unmatched pairs. 72567 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:46,546,217
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 399668 as yet unmatched pairs. 70495 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:47,980,784
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 398413 as yet unmatched pairs. 69231 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:49,404,999
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 397329 as yet unmatched pairs. 68138 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,969
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 413124 as yet unmatched pairs. 83921 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,834
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 405381 as yet unmatched pairs. 76175 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,641
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 407110 as yet unmatched pairs. 77896 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,385,140
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 383079 as yet unmatched pairs. 53860 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr17:51,260,553
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 379768 as yet unmatched pairs. 50539 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 136s. Last read position: chr17:58,357,926
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 383457 as yet unmatched pairs. 54226 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:59,666,509
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 377178 as yet unmatched pairs. 47944 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:61,405,269
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 373061 as yet unmatched pairs. 43822 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:64,072,041
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 369261 as yet unmatched pairs. 40007 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:65,558,380
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 371466 as yet unmatched pairs. 42208 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:72,124,112
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 365154 as yet unmatched pairs. 35889 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:75,263,370
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 361914 as yet unmatched pairs. 32643 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr17:75,616,551
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 359357 as yet unmatched pairs. 30082 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,824,303
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 355474 as yet unmatched pairs. 26188 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:76,627,105
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 353060 as yet unmatched pairs. 23766 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:78,175,081
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 350538 as yet unmatched pairs. 21243 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,861
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 346470 as yet unmatched pairs. 17172 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,874
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 345817 as yet unmatched pairs. 16512 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr17:81,461,608
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 340953 as yet unmatched pairs. 11644 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,165
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 342731 as yet unmatched pairs. 13419 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr17:82,026,968
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 334900 as yet unmatched pairs. 5586 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,236,749
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 332583 as yet unmatched pairs. 3268 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr18:3,255,777
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 329337 as yet unmatched pairs. 11958 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr18:23,526,706
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 326457 as yet unmatched pairs. 9074 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr18:36,033,758
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 324443 as yet unmatched pairs. 7056 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr18:51,196,923
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 321366 as yet unmatched pairs. 3978 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr18:74,253,618
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 319316 as yet unmatched pairs. 1918 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 3s. Last read position: chr19:648,912
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 315873 as yet unmatched pairs. 140139 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr19:1,036,543
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 313493 as yet unmatched pairs. 137759 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:1,300,089
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 309476 as yet unmatched pairs. 133738 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:1,986,466
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 306357 as yet unmatched pairs. 130614 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr19:2,434,297
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 303669 as yet unmatched pairs. 127922 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:3,765,246
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 300011 as yet unmatched pairs. 124255 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:4,793,271
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 296834 as yet unmatched pairs. 121076 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:5,844,285
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 296868 as yet unmatched pairs. 121108 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:7,184,451
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 291578 as yet unmatched pairs. 115815 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:8,400,008
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 289110 as yet unmatched pairs. 113347 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr19:10,284,450
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 285424 as yet unmatched pairs. 109653 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:10,793,788
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 282716 as yet unmatched pairs. 106945 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:11,436,164
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 279826 as yet unmatched pairs. 104042 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr19:12,792,643
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 279352 as yet unmatched pairs. 103567 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr19:13,906,315
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 273509 as yet unmatched pairs. 97723 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,901
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 272261 as yet unmatched pairs. 96474 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,447
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 270346 as yet unmatched pairs. 94554 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:16,876,551
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 264440 as yet unmatched pairs. 88641 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:17,826,737
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 260974 as yet unmatched pairs. 85170 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,342
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 260278 as yet unmatched pairs. 84466 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:19,649,791
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 255431 as yet unmatched pairs. 79614 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:34,393,939
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 254720 as yet unmatched pairs. 78903 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,679
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 252801 as yet unmatched pairs. 76984 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:38,141,224
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 246451 as yet unmatched pairs. 70631 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:38,724,429
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 246217 as yet unmatched pairs. 70397 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:38,907,585
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 241088 as yet unmatched pairs. 65268 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr19:39,870,248
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 241442 as yet unmatched pairs. 65619 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr19:39,886,430
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 244997 as yet unmatched pairs. 69169 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:39,902,726
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 233984 as yet unmatched pairs. 58156 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:40,265,211
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 232394 as yet unmatched pairs. 56566 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:41,344,726
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 227951 as yet unmatched pairs. 52120 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,751
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 245645 as yet unmatched pairs. 69814 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,652
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 258433 as yet unmatched pairs. 82602 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:41,718,136
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 254901 as yet unmatched pairs. 79066 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,935
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 236808 as yet unmatched pairs. 60968 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,393
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 232514 as yet unmatched pairs. 56672 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,511
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 215936 as yet unmatched pairs. 40094 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr19:43,595,196
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 212032 as yet unmatched pairs. 36185 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr19:45,271,642
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 208375 as yet unmatched pairs. 32526 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr19:46,660,920
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 205264 as yet unmatched pairs. 29400 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr19:48,150,088
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 202573 as yet unmatched pairs. 26707 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:48,969,206
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 199809 as yet unmatched pairs. 23930 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,295
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 201095 as yet unmatched pairs. 25216 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr19:49,854,690
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 194214 as yet unmatched pairs. 18333 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:50,276,783
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 191590 as yet unmatched pairs. 15706 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:52,216,513
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 187829 as yet unmatched pairs. 11944 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,971
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 185917 as yet unmatched pairs. 10026 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,426
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 184792 as yet unmatched pairs. 8885 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr19:57,849,927
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 180081 as yet unmatched pairs. 4160 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr20:505,128
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 175643 as yet unmatched pairs. 57442 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr20:3,109,813
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 172214 as yet unmatched pairs. 54010 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr20:5,118,623
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 169881 as yet unmatched pairs. 51671 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr20:17,607,032
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 167990 as yet unmatched pairs. 49780 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr20:17,956,936
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 166447 as yet unmatched pairs. 48236 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr20:25,048,102
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 161910 as yet unmatched pairs. 43687 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 2s. Last read position: chr20:25,295,631
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 164358 as yet unmatched pairs. 46135 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr20:32,234,482
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 156734 as yet unmatched pairs. 38509 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr20:34,534,662
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 156156 as yet unmatched pairs. 37928 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr20:35,503,089
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 150396 as yet unmatched pairs. 32165 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr20:36,549,106
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 147948 as yet unmatched pairs. 29717 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr20:38,517,533
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 145060 as yet unmatched pairs. 26825 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr20:44,419,641
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 143808 as yet unmatched pairs. 25565 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr20:45,882,922
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 139862 as yet unmatched pairs. 21618 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr20:48,951,455
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 137687 as yet unmatched pairs. 19443 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,613
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 134928 as yet unmatched pairs. 16682 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr20:58,701,077
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 132107 as yet unmatched pairs. 13858 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr20:62,260,086
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 130498 as yet unmatched pairs. 12248 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr20:62,881,519
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 126264 as yet unmatched pairs. 8012 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr20:63,567,169
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 123682 as yet unmatched pairs. 5426 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr20:63,995,349
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 119824 as yet unmatched pairs. 1566 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,283
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 117517 as yet unmatched pairs. 21135 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,068
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 116604 as yet unmatched pairs. 20222 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,111
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 114405 as yet unmatched pairs. 18018 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr21:32,609,924
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 112951 as yet unmatched pairs. 16562 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr21:37,108,436
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 110110 as yet unmatched pairs. 13718 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr21:41,473,354
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 112605 as yet unmatched pairs. 16210 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chr21:42,896,950
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 104754 as yet unmatched pairs. 8355 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr21:44,889,399
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 101452 as yet unmatched pairs. 5051 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,509
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 98996 as yet unmatched pairs. 2594 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr22:19,122,067
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 96252 as yet unmatched pairs. 43430 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr22:20,983,061
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 92167 as yet unmatched pairs. 39345 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr22:23,766,145
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 92310 as yet unmatched pairs. 39488 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chr22:26,464,132
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 86892 as yet unmatched pairs. 34069 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,646
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 88452 as yet unmatched pairs. 35629 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr22:31,127,952
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 81153 as yet unmatched pairs. 28329 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr22:36,227,677
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 78544 as yet unmatched pairs. 25717 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr22:36,326,568
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 79171 as yet unmatched pairs. 26344 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chr22:37,755,139
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 73628 as yet unmatched pairs. 20801 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chr22:38,738,606
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 70693 as yet unmatched pairs. 17862 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr22:41,149,919
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 66802 as yet unmatched pairs. 13971 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chr22:42,062,926
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 64536 as yet unmatched pairs. 11704 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr22:45,323,258
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 62088 as yet unmatched pairs. 9256 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr22:50,224,241
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 58407 as yet unmatched pairs. 5573 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr22:50,505,280
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 55309 as yet unmatched pairs. 2475 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 2s. Last read position: chrX:2,490,676
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 51849 as yet unmatched pairs. 43409 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: chrX:15,600,863
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 49245 as yet unmatched pairs. 40805 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chrX:24,211,252
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 46644 as yet unmatched pairs. 38198 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chrX:41,343,286
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 46011 as yet unmatched pairs. 37564 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: chrX:47,448,394
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 41736 as yet unmatched pairs. 33289 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chrX:48,923,904
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 40321 as yet unmatched pairs. 31873 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: chrX:53,194,553
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 37313 as yet unmatched pairs. 28865 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chrX:53,625,787
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 34629 as yet unmatched pairs. 26181 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 1s. Last read position: chrX:67,546,511
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 31210 as yet unmatched pairs. 22762 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chrX:71,556,037
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 31066 as yet unmatched pairs. 22618 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 1s. Last read position: chrX:78,123,270
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 29877 as yet unmatched pairs. 21426 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,248
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 25767 as yet unmatched pairs. 17316 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chrX:119,653,010
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 21913 as yet unmatched pairs. 13462 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chrX:130,665,701
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 19627 as yet unmatched pairs. 11174 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 1s. Last read position: chrX:152,990,893
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 19660 as yet unmatched pairs. 11206 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,953
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 14840 as yet unmatched pairs. 6385 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 2s. Last read position: chrX:154,400,460
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 12513 as yet unmatched pairs. 4056 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 659,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chrX:155,889,541
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 8870 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 660,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,462
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 11162 as yet unmatched pairs. 5328 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 661,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,323
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 5842 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 662,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,613
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 1240 as yet unmatched pairs. 1231 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 662940007 records. 0 pairs never matched.
INFO 2026-06-08 09:14:46 MarkDuplicates After buildSortedReadEndLists freeMemory: 204145256; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:14:46 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:14:52 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:14:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,634
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:15:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,892
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,580
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,497
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,492
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,761
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,229
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,540
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,799
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,719
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,025
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1765
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,774
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,845
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:15:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,822
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder Large duplicate set. size = 1384
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,336
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:15:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,037
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,998
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,453
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,925
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,285
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1925
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,205
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 5432
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,495
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,319
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,639
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,470
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,097
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1719
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,838
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:15:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,702
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder Large duplicate set. size = 1410
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,149
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,356
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder Large duplicate set. size = 1841
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,366
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,424
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:15:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,441
INFO 2026-06-08 09:15:53 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:15:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,814
INFO 2026-06-08 09:16:19 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:16:19 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:17:23 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:17:24 MarkDuplicates After generateDuplicateIndexes freeMemory: 203943200; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:17:24 MarkDuplicates Marking 286331608 records as duplicates.
INFO 2026-06-08 09:17:24 MarkDuplicates Found 38169402 optical duplicate clusters.
INFO 2026-06-08 09:17:24 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:17:42 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:22,781,419
INFO 2026-06-08 09:17:59 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:45,009,657
INFO 2026-06-08 09:18:16 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:119,997,180
INFO 2026-06-08 09:18:33 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:156,786,723
INFO 2026-06-08 09:18:50 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:206,934,467
INFO 2026-06-08 09:19:07 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr2:24,299,916
INFO 2026-06-08 09:19:23 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 16s. Last read position: chr2:54,623,570
INFO 2026-06-08 09:19:40 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 16s. Last read position: chr2:110,091,736
INFO 2026-06-08 09:19:58 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 17s. Last read position: chr2:215,365,526
INFO 2026-06-08 09:20:15 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 17s. Last read position: chr3:15,095,889
INFO 2026-06-08 09:20:32 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 17s. Last read position: chr3:52,679,629
INFO 2026-06-08 09:20:50 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr3:168,044,846
INFO 2026-06-08 09:21:07 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 17s. Last read position: chr4:8,236,341
INFO 2026-06-08 09:21:25 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 17s. Last read position: chr5:256,508
INFO 2026-06-08 09:21:42 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 17s. Last read position: chr5:132,866,678
INFO 2026-06-08 09:22:00 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 17s. Last read position: chr5:177,097,324
INFO 2026-06-08 09:22:17 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 17s. Last read position: chr6:30,684,847
INFO 2026-06-08 09:22:34 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 17s. Last read position: chr6:44,251,536
INFO 2026-06-08 09:22:51 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 17s. Last read position: chr6:158,787,190
INFO 2026-06-08 09:23:09 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 17s. Last read position: chr7:42,917,493
INFO 2026-06-08 09:23:26 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:01s. Time for last 10,000,000: 17s. Last read position: chr7:100,478,046
INFO 2026-06-08 09:23:42 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 16s. Last read position: chr7:100,995,210
INFO 2026-06-08 09:23:59 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 16s. Last read position: chr7:100,997,479
INFO 2026-06-08 09:24:16 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 16s. Last read position: chr7:100,999,558
INFO 2026-06-08 09:24:32 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 16s. Last read position: chr7:101,001,579
INFO 2026-06-08 09:24:49 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:25s. Time for last 10,000,000: 16s. Last read position: chr7:106,091,889
INFO 2026-06-08 09:25:06 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 17s. Last read position: chr8:21,984,741
INFO 2026-06-08 09:25:24 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 17s. Last read position: chr8:118,110,976
INFO 2026-06-08 09:25:40 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 16s. Last read position: chr8:144,360,094
INFO 2026-06-08 09:25:58 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 17s. Last read position: chr9:115,086,988
INFO 2026-06-08 09:26:15 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 17s. Last read position: chr10:5,936,568
INFO 2026-06-08 09:26:32 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 17s. Last read position: chr10:96,949,063
INFO 2026-06-08 09:26:49 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 17s. Last read position: chr10:122,631,227
INFO 2026-06-08 09:27:06 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 17s. Last read position: chr11:2,572,047
INFO 2026-06-08 09:27:23 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:59s. Time for last 10,000,000: 17s. Last read position: chr11:59,610,532
INFO 2026-06-08 09:27:41 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 17s. Last read position: chr11:65,855,945
INFO 2026-06-08 09:27:58 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 17s. Last read position: chr11:102,840,166
INFO 2026-06-08 09:28:16 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 17s. Last read position: chr12:8,049,424
INFO 2026-06-08 09:28:33 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 17s. Last read position: chr12:56,128,471
INFO 2026-06-08 09:28:50 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 17s. Last read position: chr12:112,405,325
INFO 2026-06-08 09:29:07 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 17s. Last read position: chr13:45,338,705
INFO 2026-06-08 09:29:25 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 17s. Last read position: chr14:24,372,558
INFO 2026-06-08 09:29:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 17s. Last read position: chr14:102,033,395
INFO 2026-06-08 09:29:59 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:35s. Time for last 10,000,000: 16s. Last read position: chr15:38,090,157
INFO 2026-06-08 09:30:16 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 17s. Last read position: chr15:78,270,545
INFO 2026-06-08 09:30:34 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 17s. Last read position: chr16:4,694,029
INFO 2026-06-08 09:30:51 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 17s. Last read position: chr16:21,405,400
INFO 2026-06-08 09:31:08 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr16:29,859,202
INFO 2026-06-08 09:31:25 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 17s. Last read position: chr16:67,878,997
INFO 2026-06-08 09:31:43 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 17s. Last read position: chr17:7,241,355
INFO 2026-06-08 09:32:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 17s. Last read position: chr17:38,850,449
INFO 2026-06-08 09:32:17 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 17s. Last read position: chr17:49,404,999
INFO 2026-06-08 09:32:35 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 17s. Last read position: chr17:65,558,380
INFO 2026-06-08 09:32:52 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:27s. Time for last 10,000,000: 17s. Last read position: chr17:81,845,165
INFO 2026-06-08 09:33:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 17s. Last read position: chr19:1,300,089
INFO 2026-06-08 09:33:27 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:02s. Time for last 10,000,000: 17s. Last read position: chr19:11,436,164
INFO 2026-06-08 09:33:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 17s. Last read position: chr19:35,267,679
INFO 2026-06-08 09:34:01 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 16s. Last read position: chr19:41,715,652
INFO 2026-06-08 09:34:19 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:55s. Time for last 10,000,000: 18s. Last read position: chr19:49,497,295
INFO 2026-06-08 09:34:37 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:13s. Time for last 10,000,000: 18s. Last read position: chr20:17,607,032
INFO 2026-06-08 09:34:55 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 18s. Last read position: chr20:45,882,922
INFO 2026-06-08 09:35:13 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:48s. Time for last 10,000,000: 17s. Last read position: chr21:8,444,111
INFO 2026-06-08 09:35:30 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:06s. Time for last 10,000,000: 17s. Last read position: chr22:26,464,132
INFO 2026-06-08 09:35:49 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:24s. Time for last 10,000,000: 18s. Last read position: chr22:50,224,241
INFO 2026-06-08 09:36:07 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:18:42s. Time for last 10,000,000: 17s. Last read position: chrX:67,546,511
INFO 2026-06-08 09:36:26 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:19:02s. Time for last 10,000,000: 19s. Last read position: GL000220.1:115,462
INFO 2026-06-08 09:36:40 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:36:40 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:36:41 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:36:41 MarkDuplicates Before output close freeMemory: 203265792; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:36:41 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:36:41 MarkDuplicates After output close freeMemory: 104150368; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:36:41 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.00 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory