Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d87df96d0681a710629f79dc302b5d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f65016ba237998926cb8c2773f2ba9/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d87df96d0681a710629f79dc302b5d/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00574_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00574_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:49:37.651 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:49:37 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00574_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00574_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:49:37 GMT 2026] Executing as ?@nf-a5d87df96d0681a710629f79dc302b5d-6cf7a-5n79f on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:49:37 MarkDuplicates Start of doWork freeMemory: 105491840; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:49:37 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:49:37 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,355,123
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 3801 as yet unmatched pairs. 729 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:2,402,281
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 7212 as yet unmatched pairs. 1168 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,013,638
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 10106 as yet unmatched pairs. 962 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:10,629,665
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 11982 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:12,506,923
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 14704 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:16,627,240
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 17166 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,597,039
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 20074 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,832,573
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 23510 as yet unmatched pairs. 1021 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,885,336
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 27166 as yet unmatched pairs. 1721 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,961,793
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 28871 as yet unmatched pairs. 795 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,779,556
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 31336 as yet unmatched pairs. 727 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:28,577,505
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 33554 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:31,672,826
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 37976 as yet unmatched pairs. 1698 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,657,436
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 40556 as yet unmatched pairs. 1466 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:35,466,619
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 42279 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:37,803,887
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 44828 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:39,453,739
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 48075 as yet unmatched pairs. 950 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:42,697,249
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 50172 as yet unmatched pairs. 469 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:43,671,735
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 52847 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:45,640,174
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 55650 as yet unmatched pairs. 389 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:51,361,183
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 58531 as yet unmatched pairs. 695 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:54,205,113
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 60898 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:62,123,032
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 63153 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:75,761,330
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 65438 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:88,784,611
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 67813 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:94,903,494
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 70990 as yet unmatched pairs. 1125 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:109,194,525
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 72948 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:109,737,550
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 79035 as yet unmatched pairs. 4125 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:113,653,921
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 77781 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:116,984,714
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 80517 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:119,941,624
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 84625 as yet unmatched pairs. 2068 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:144,063,309
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 84524 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:146,101,855
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 86244 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:148,550,381
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 88521 as yet unmatched pairs. 1205 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:149,499,082
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 88396 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:150,577,368
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 95582 as yet unmatched pairs. 5016 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:151,265,406
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 93775 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,643,248
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 95888 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,013
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 100985 as yet unmatched pairs. 2924 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,055,792
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 101269 as yet unmatched pairs. 666 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,380,079
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 103566 as yet unmatched pairs. 614 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,251
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 109722 as yet unmatched pairs. 4150 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,514
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 116960 as yet unmatched pairs. 8334 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:156,767,766
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 111960 as yet unmatched pairs. 411 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:160,355,868
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 114827 as yet unmatched pairs. 580 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:162,518,125
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 117677 as yet unmatched pairs. 947 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:170,726,389
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 120380 as yet unmatched pairs. 1221 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:178,464,331
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 121540 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:182,858,202
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 124284 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:186,318,812
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 127667 as yet unmatched pairs. 1137 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:200,973,468
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 128753 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:203,305,616
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 133697 as yet unmatched pairs. 2245 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:204,620,069
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 134049 as yet unmatched pairs. 58 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:208,217,414
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 136855 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:220,139,045
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 139524 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:225,831,901
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 142597 as yet unmatched pairs. 1066 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:228,264,168
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 144618 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,831
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 150138 as yet unmatched pairs. 2786 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:243,664,853
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 150778 as yet unmatched pairs. 810 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 3s. Last read position: chr2:1,643,451
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 153189 as yet unmatched pairs. 152044 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:10,913,217
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 155482 as yet unmatched pairs. 154318 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:20,282,970
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 158187 as yet unmatched pairs. 156994 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:26,188,173
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 160407 as yet unmatched pairs. 159187 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:27,581,390
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 163314 as yet unmatched pairs. 162077 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:32,503,216
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 166208 as yet unmatched pairs. 164937 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 419373 as yet unmatched pairs. 152871 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1124602 as yet unmatched pairs. 119624 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 1359336 as yet unmatched pairs. 108718 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1368594 as yet unmatched pairs. 108431 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:38,071,148
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 1451772 as yet unmatched pairs. 104045 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:43,644,717
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1448854 as yet unmatched pairs. 101108 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:53,854,110
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 1446220 as yet unmatched pairs. 98452 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:55,308,913
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 1443585 as yet unmatched pairs. 95797 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:64,095,139
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 1441466 as yet unmatched pairs. 93654 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:70,943,561
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 1439263 as yet unmatched pairs. 91441 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:74,172,650
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 1436539 as yet unmatched pairs. 88692 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:85,343,652
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 1433668 as yet unmatched pairs. 85791 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:88,067,853
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 1431351 as yet unmatched pairs. 83467 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:96,860,666
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1428953 as yet unmatched pairs. 81053 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:99,594,199
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 1427628 as yet unmatched pairs. 79697 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:106,426,039
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 1424240 as yet unmatched pairs. 76249 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:109,831,399
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1422518 as yet unmatched pairs. 74496 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:113,182,590
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1421885 as yet unmatched pairs. 73857 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:127,763,012
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 1419043 as yet unmatched pairs. 70972 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:131,626,513
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1416346 as yet unmatched pairs. 68245 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:152,389,941
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 1414577 as yet unmatched pairs. 66438 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:162,005,755
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1411845 as yet unmatched pairs. 63678 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:171,785,458
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1409459 as yet unmatched pairs. 61251 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:178,584,312
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 1407282 as yet unmatched pairs. 59035 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:188,988,083
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 1415804 as yet unmatched pairs. 67545 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:188,999,309
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 1410148 as yet unmatched pairs. 61880 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:189,010,341
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 1404227 as yet unmatched pairs. 55946 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:190,659,441
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1396139 as yet unmatched pairs. 47848 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:200,856,682
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 1393834 as yet unmatched pairs. 45527 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:206,149,895
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 1391269 as yet unmatched pairs. 42946 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,001
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 1402908 as yet unmatched pairs. 54541 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,193
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 1410606 as yet unmatched pairs. 62199 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,637
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 1406841 as yet unmatched pairs. 58427 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,868
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 1393839 as yet unmatched pairs. 45423 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,689
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 1388417 as yet unmatched pairs. 39996 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,168
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 1391651 as yet unmatched pairs. 43222 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,188
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 1382327 as yet unmatched pairs. 33883 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,436
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 1383825 as yet unmatched pairs. 35379 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:217,847,674
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 1370685 as yet unmatched pairs. 22219 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:219,224,456
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 1367128 as yet unmatched pairs. 18623 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:226,798,094
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1364532 as yet unmatched pairs. 16014 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:231,798,927
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1361865 as yet unmatched pairs. 13319 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,712
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1361257 as yet unmatched pairs. 12687 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:237,367,043
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1358733 as yet unmatched pairs. 10159 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:237,493,431
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 1356227 as yet unmatched pairs. 7633 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:241,037,278
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 1351485 as yet unmatched pairs. 2853 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:4,800,403
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1348518 as yet unmatched pairs. 67542 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:10,088,827
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 1345633 as yet unmatched pairs. 64621 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:13,629,907
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 1344715 as yet unmatched pairs. 63676 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:25,626,801
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1340951 as yet unmatched pairs. 59884 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:37,452,381
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1338377 as yet unmatched pairs. 57290 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:42,638,474
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 1336134 as yet unmatched pairs. 55020 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:47,409,732
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1333284 as yet unmatched pairs. 52151 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:48,685,646
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1330511 as yet unmatched pairs. 49374 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:49,163,013
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1327555 as yet unmatched pairs. 46413 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:50,273,986
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1325903 as yet unmatched pairs. 44754 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:52,503,357
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 1322419 as yet unmatched pairs. 41258 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:58,078,759
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 1321792 as yet unmatched pairs. 40605 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:66,380,372
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 1317780 as yet unmatched pairs. 36559 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,536
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1315861 as yet unmatched pairs. 34600 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:111,973,767
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 1312812 as yet unmatched pairs. 31529 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:120,093,415
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1310379 as yet unmatched pairs. 29074 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:124,796,419
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 1308697 as yet unmatched pairs. 27380 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:129,257,472
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 1305475 as yet unmatched pairs. 24127 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:133,834,570
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1302306 as yet unmatched pairs. 20941 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:142,187,753
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1300023 as yet unmatched pairs. 18637 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:150,544,446
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 1298749 as yet unmatched pairs. 17343 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:160,438,818
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 1294963 as yet unmatched pairs. 13539 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:179,239,959
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1292681 as yet unmatched pairs. 11219 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:184,300,434
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1291802 as yet unmatched pairs. 10330 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:186,842,729
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 1287831 as yet unmatched pairs. 6345 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:194,137,820
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 1285446 as yet unmatched pairs. 3927 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:196,052,125
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 1283791 as yet unmatched pairs. 2240 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr4:870,889
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 1281154 as yet unmatched pairs. 46495 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,794
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1278645 as yet unmatched pairs. 43967 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:3,127,489
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 1274949 as yet unmatched pairs. 40259 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:7,725,271
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 1271601 as yet unmatched pairs. 36901 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:17,487,210
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1269108 as yet unmatched pairs. 34381 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:39,508,572
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1269152 as yet unmatched pairs. 34395 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:52,744,555
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 1264214 as yet unmatched pairs. 29433 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,253
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1261672 as yet unmatched pairs. 26876 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:76,741,355
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1259721 as yet unmatched pairs. 24895 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:84,743,736
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 1257234 as yet unmatched pairs. 22386 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:89,895,452
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1254728 as yet unmatched pairs. 19869 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:99,906,520
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1252539 as yet unmatched pairs. 17674 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:112,145,682
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 1250459 as yet unmatched pairs. 15575 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:122,230,090
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 1248016 as yet unmatched pairs. 13125 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:139,720,093
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 1245457 as yet unmatched pairs. 10532 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:147,624,988
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 1243132 as yet unmatched pairs. 8173 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:153,585,578
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 1240620 as yet unmatched pairs. 5646 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,369
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 1238869 as yet unmatched pairs. 3886 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr4:185,652,680
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 1236016 as yet unmatched pairs. 1014 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr5:10,254,694
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 1233858 as yet unmatched pairs. 65432 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:14,482,688
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 1231670 as yet unmatched pairs. 63229 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr5:34,686,903
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 1228146 as yet unmatched pairs. 59686 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:40,832,537
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 1225815 as yet unmatched pairs. 57350 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,425
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 1225967 as yet unmatched pairs. 57483 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:66,046,438
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 1221679 as yet unmatched pairs. 53171 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:71,041,506
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1219090 as yet unmatched pairs. 50557 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:76,403,844
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 1216864 as yet unmatched pairs. 48314 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,282
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 1217448 as yet unmatched pairs. 48870 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:95,888,794
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1212220 as yet unmatched pairs. 43608 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:113,001,086
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 1210132 as yet unmatched pairs. 41503 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:131,431,283
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 1207702 as yet unmatched pairs. 39062 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:134,782,989
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1205359 as yet unmatched pairs. 36703 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,394
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 1205913 as yet unmatched pairs. 37245 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:139,476,301
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 1201326 as yet unmatched pairs. 32621 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:141,370,886
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 1198161 as yet unmatched pairs. 29408 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:146,168,227
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 1196567 as yet unmatched pairs. 27795 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:150,121,903
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 1195570 as yet unmatched pairs. 26795 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:150,404,697
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 1201204 as yet unmatched pairs. 32425 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:151,025,479
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 1187923 as yet unmatched pairs. 19144 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr5:154,799,692
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1185359 as yet unmatched pairs. 16562 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,940
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 1189244 as yet unmatched pairs. 20417 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:172,935,227
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 1181434 as yet unmatched pairs. 12578 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:176,500,127
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 1178048 as yet unmatched pairs. 9179 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:178,211,957
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 1175077 as yet unmatched pairs. 6183 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,092
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 1177562 as yet unmatched pairs. 8649 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,958
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 1172540 as yet unmatched pairs. 3609 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,587
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 1167882 as yet unmatched pairs. 78894 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:11,213,568
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 1164512 as yet unmatched pairs. 75508 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:24,716,268
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 1162318 as yet unmatched pairs. 73298 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:28,904,324
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 1159746 as yet unmatched pairs. 70704 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:30,722,573
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 1159148 as yet unmatched pairs. 70096 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:31,581,561
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 1154282 as yet unmatched pairs. 65217 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,969
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 1151794 as yet unmatched pairs. 62725 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,979,488
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 1149924 as yet unmatched pairs. 60853 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:32,053,423
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 1150807 as yet unmatched pairs. 61733 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:32,081,369
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 1147156 as yet unmatched pairs. 58070 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:32,202,102
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 1142168 as yet unmatched pairs. 53066 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:33,293,175
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 1141045 as yet unmatched pairs. 51939 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:34,539,346
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 1137500 as yet unmatched pairs. 48380 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:36,978,132
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1134743 as yet unmatched pairs. 45612 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:43,013,189
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 1131569 as yet unmatched pairs. 42426 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:44,248,644
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 1130758 as yet unmatched pairs. 41603 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:53,270,593
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 1131746 as yet unmatched pairs. 42556 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,551
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 1125144 as yet unmatched pairs. 35937 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:75,151,150
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 1122114 as yet unmatched pairs. 32888 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:83,167,899
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1119240 as yet unmatched pairs. 30003 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:99,401,051
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1117554 as yet unmatched pairs. 28293 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:109,444,250
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 1114158 as yet unmatched pairs. 24868 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:117,602,106
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 1113063 as yet unmatched pairs. 23756 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:122,717,839
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 1109057 as yet unmatched pairs. 19736 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:131,950,117
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 1111520 as yet unmatched pairs. 22187 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:137,871,223
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 1104115 as yet unmatched pairs. 14777 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:144,487,560
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 1102078 as yet unmatched pairs. 12731 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:151,351,742
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 1099826 as yet unmatched pairs. 10454 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,476
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 1096926 as yet unmatched pairs. 7456 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,358
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 1098097 as yet unmatched pairs. 8613 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr6:167,827,169
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 1092702 as yet unmatched pairs. 3198 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr7:849,964
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 1090022 as yet unmatched pairs. 74385 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr7:4,682,643
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 1086281 as yet unmatched pairs. 70633 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,082
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 1093295 as yet unmatched pairs. 77627 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:6,591,705
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 1080539 as yet unmatched pairs. 64860 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:22,145,206
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 1078070 as yet unmatched pairs. 62369 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:30,595,046
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 1075792 as yet unmatched pairs. 60076 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:42,026,271
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 1073387 as yet unmatched pairs. 57666 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:44,117,978
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 1070671 as yet unmatched pairs. 54947 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:55,143,241
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 1068065 as yet unmatched pairs. 52317 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:70,771,696
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 1065801 as yet unmatched pairs. 50010 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:73,692,609
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 1064507 as yet unmatched pairs. 48709 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:75,109,052
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 1061427 as yet unmatched pairs. 45627 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,986
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 1067279 as yet unmatched pairs. 51476 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:80,828,583
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 1057762 as yet unmatched pairs. 41953 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:92,236,411
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 1054627 as yet unmatched pairs. 38813 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr7:94,409,387
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 1059575 as yet unmatched pairs. 43751 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:94,422,964
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 1055013 as yet unmatched pairs. 39177 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,782
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 1047049 as yet unmatched pairs. 31201 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:99,968,263
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 1047419 as yet unmatched pairs. 31551 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,607,479
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 1042564 as yet unmatched pairs. 26685 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:102,227,399
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 1038874 as yet unmatched pairs. 22979 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:103,594,363
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 1036950 as yet unmatched pairs. 21048 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:108,472,508
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 1034850 as yet unmatched pairs. 18929 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr7:127,707,597
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 1036304 as yet unmatched pairs. 20348 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:131,662,015
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 1029800 as yet unmatched pairs. 13824 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:138,918,769
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 1027565 as yet unmatched pairs. 11584 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:143,381,646
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 1025028 as yet unmatched pairs. 9010 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:149,281,608
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 1022874 as yet unmatched pairs. 6850 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:151,235,281
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 1019575 as yet unmatched pairs. 3523 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:157,225,463
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 1017358 as yet unmatched pairs. 1288 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr8:12,731,829
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 1014535 as yet unmatched pairs. 55049 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 74s. Last read position: chr8:22,176,534
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 1012068 as yet unmatched pairs. 52556 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:26,338,959
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 1009402 as yet unmatched pairs. 49883 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:33,489,090
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 1006704 as yet unmatched pairs. 47170 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:37,841,812
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 1003662 as yet unmatched pairs. 44112 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr8:38,424,681
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 1002611 as yet unmatched pairs. 43050 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr8:41,941,330
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 999065 as yet unmatched pairs. 39488 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:47,890,283
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 996104 as yet unmatched pairs. 36512 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:60,742,460
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 993483 as yet unmatched pairs. 33877 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:70,131,869
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 992387 as yet unmatched pairs. 32760 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:81,659,368
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 988970 as yet unmatched pairs. 29319 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr8:96,261,934
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 986388 as yet unmatched pairs. 26724 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,943
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 986665 as yet unmatched pairs. 26995 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:102,839,796
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 982527 as yet unmatched pairs. 22853 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:115,619,896
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 981512 as yet unmatched pairs. 21805 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:122,973,266
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 976802 as yet unmatched pairs. 17068 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,429
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 976930 as yet unmatched pairs. 17167 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:133,262,086
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 972640 as yet unmatched pairs. 12838 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr8:143,810,552
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 968777 as yet unmatched pairs. 8952 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,394
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 967210 as yet unmatched pairs. 7378 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,650
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 964694 as yet unmatched pairs. 4849 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:144,473,183
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 961436 as yet unmatched pairs. 1581 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:5,832,812
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 958526 as yet unmatched pairs. 51594 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:19,276,199
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 956815 as yet unmatched pairs. 49844 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:33,923,362
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 953460 as yet unmatched pairs. 46482 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:35,700,356
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 951306 as yet unmatched pairs. 44325 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr9:41,189,159
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 948181 as yet unmatched pairs. 41183 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:77,319,663
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 946097 as yet unmatched pairs. 39084 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:91,410,153
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 943653 as yet unmatched pairs. 36614 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:97,464,838
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 940947 as yet unmatched pairs. 33890 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,881
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 939734 as yet unmatched pairs. 32663 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:114,168,567
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 936064 as yet unmatched pairs. 28979 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:120,713,860
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 933442 as yet unmatched pairs. 26349 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:122,857,995
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 930289 as yet unmatched pairs. 23182 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:127,682,529
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 927777 as yet unmatched pairs. 20654 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:128,577,425
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 925145 as yet unmatched pairs. 18003 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:129,994,938
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 921993 as yet unmatched pairs. 14843 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr9:131,491,564
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 919682 as yet unmatched pairs. 12517 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:134,690,941
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 916947 as yet unmatched pairs. 9768 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:136,050,007
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 913454 as yet unmatched pairs. 6272 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:136,980,183
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 910408 as yet unmatched pairs. 3215 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr10:237,637
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 907797 as yet unmatched pairs. 46540 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:5,746,452
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 905497 as yet unmatched pairs. 44234 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:11,489,211
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 902331 as yet unmatched pairs. 41050 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:20,164,511
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 900131 as yet unmatched pairs. 38837 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:28,533,898
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 897837 as yet unmatched pairs. 36513 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr10:32,292,550
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 895486 as yet unmatched pairs. 34149 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:37,219,681
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 894972 as yet unmatched pairs. 33624 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,654
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 892699 as yet unmatched pairs. 31320 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:60,059,418
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 888576 as yet unmatched pairs. 27178 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:70,404,387
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 886348 as yet unmatched pairs. 24921 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:73,998,216
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 883794 as yet unmatched pairs. 22352 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr10:79,844,513
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 880800 as yet unmatched pairs. 19349 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:89,225,151
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 878652 as yet unmatched pairs. 17188 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:95,872,160
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 876031 as yet unmatched pairs. 14543 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:100,360,758
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 875116 as yet unmatched pairs. 13622 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:102,424,329
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 870970 as yet unmatched pairs. 9467 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:112,161,677
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 868391 as yet unmatched pairs. 6878 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:119,831,452
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 865775 as yet unmatched pairs. 4257 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:127,137,884
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 863473 as yet unmatched pairs. 1944 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 3s. Last read position: chr11:320,667
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 865075 as yet unmatched pairs. 91957 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,013,915
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 856948 as yet unmatched pairs. 83829 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:3,827,731
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 854119 as yet unmatched pairs. 80996 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:8,730,067
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 851600 as yet unmatched pairs. 78475 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:12,518,477
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 849154 as yet unmatched pairs. 76019 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:32,927,189
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 846612 as yet unmatched pairs. 73448 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:35,663,641
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 844979 as yet unmatched pairs. 71792 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:46,542,962
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 841805 as yet unmatched pairs. 68606 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:57,309,161
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 840767 as yet unmatched pairs. 67561 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:58,570,598
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 836609 as yet unmatched pairs. 63395 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,130,471
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 833899 as yet unmatched pairs. 60680 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,964
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 836379 as yet unmatched pairs. 63149 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,754
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 832790 as yet unmatched pairs. 59553 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,567,508
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 827985 as yet unmatched pairs. 54744 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,797,326
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 824297 as yet unmatched pairs. 51050 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:64,244,810
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 821923 as yet unmatched pairs. 48662 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:65,088,070
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 818329 as yet unmatched pairs. 45057 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,547,794
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 816893 as yet unmatched pairs. 43559 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr11:65,716,824
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 812162 as yet unmatched pairs. 38822 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,229
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 810270 as yet unmatched pairs. 36928 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:67,250,363
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 806417 as yet unmatched pairs. 33066 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:68,423,621
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 803136 as yet unmatched pairs. 29770 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:69,653,188
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 801618 as yet unmatched pairs. 28247 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,427
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 798776 as yet unmatched pairs. 25390 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:73,311,442
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 794958 as yet unmatched pairs. 21571 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:76,860,990
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 792141 as yet unmatched pairs. 18738 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,376
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 791224 as yet unmatched pairs. 17811 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:102,843,422
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 786937 as yet unmatched pairs. 13501 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:114,064,563
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 786149 as yet unmatched pairs. 12702 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:118,473,869
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 782388 as yet unmatched pairs. 8919 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr11:119,311,529
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 779742 as yet unmatched pairs. 6264 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:125,446,099
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 776544 as yet unmatched pairs. 3062 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:130,910,334
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 773991 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr12:2,799,233
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 772235 as yet unmatched pairs. 86866 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:6,330,622
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 769367 as yet unmatched pairs. 83994 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:6,872,240
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 766255 as yet unmatched pairs. 80874 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:7,486,674
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 764650 as yet unmatched pairs. 79255 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,013
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 761732 as yet unmatched pairs. 76328 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:14,882,079
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 762278 as yet unmatched pairs. 76863 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:26,724,733
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 757344 as yet unmatched pairs. 71922 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:45,409,468
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 754548 as yet unmatched pairs. 69108 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:47,985,802
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 753185 as yet unmatched pairs. 67741 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,493
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 749489 as yet unmatched pairs. 64042 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:49,795,609
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 746688 as yet unmatched pairs. 61241 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,527
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 751492 as yet unmatched pairs. 66038 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:53,022,495
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 741936 as yet unmatched pairs. 56475 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,039
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 741772 as yet unmatched pairs. 56304 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:54,409,264
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 736738 as yet unmatched pairs. 51266 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,143,190
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 733863 as yet unmatched pairs. 48384 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:56,638,288
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 732332 as yet unmatched pairs. 46848 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,141,454
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 731147 as yet unmatched pairs. 45662 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:57,201,803
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 727270 as yet unmatched pairs. 41782 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,745,887
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 724244 as yet unmatched pairs. 38750 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:67,306,576
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 721192 as yet unmatched pairs. 35694 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:75,490,506
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 718505 as yet unmatched pairs. 33003 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,854
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 719107 as yet unmatched pairs. 33595 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:96,246,977
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 714393 as yet unmatched pairs. 28870 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:103,934,097
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 712368 as yet unmatched pairs. 26841 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:109,052,701
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 708832 as yet unmatched pairs. 23305 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:110,731,884
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 706097 as yet unmatched pairs. 20570 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr12:113,165,905
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 703686 as yet unmatched pairs. 18146 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:116,911,264
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 700738 as yet unmatched pairs. 15185 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:120,438,147
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 700711 as yet unmatched pairs. 15132 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:122,235,829
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 695239 as yet unmatched pairs. 9651 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:124,012,695
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 693281 as yet unmatched pairs. 7666 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:124,950,427
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 690144 as yet unmatched pairs. 4520 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:132,583,383
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 687383 as yet unmatched pairs. 1739 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:21,140,974
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 685607 as yet unmatched pairs. 20059 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:31,158,815
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 682364 as yet unmatched pairs. 16811 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr13:37,584,031
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 682963 as yet unmatched pairs. 17397 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:45,339,529
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 679376 as yet unmatched pairs. 13783 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:71,559,824
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 675086 as yet unmatched pairs. 9468 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr13:98,449,555
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 672472 as yet unmatched pairs. 6851 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr13:110,195,087
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 670878 as yet unmatched pairs. 5244 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr13:113,306,529
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 667616 as yet unmatched pairs. 1972 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr14:21,211,520
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 665585 as yet unmatched pairs. 42785 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:23,053,588
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 661704 as yet unmatched pairs. 38897 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:24,177,999
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 658767 as yet unmatched pairs. 35956 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:31,135,591
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 656527 as yet unmatched pairs. 33713 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:39,180,931
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 654072 as yet unmatched pairs. 31249 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:52,004,443
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 651643 as yet unmatched pairs. 28728 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:59,330,673
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 649023 as yet unmatched pairs. 26101 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:64,741,094
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 646940 as yet unmatched pairs. 24007 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,368
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 643840 as yet unmatched pairs. 20901 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:74,555,626
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 642027 as yet unmatched pairs. 19083 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,901
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 647132 as yet unmatched pairs. 24174 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,852
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 636565 as yet unmatched pairs. 13604 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:94,590,113
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 634241 as yet unmatched pairs. 11275 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:101,986,036
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 631814 as yet unmatched pairs. 8835 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:103,662,831
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 628582 as yet unmatched pairs. 5599 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,314,931
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 625806 as yet unmatched pairs. 2810 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:106,360,234
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 623015 as yet unmatched pairs. 9 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr15:29,726,913
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 621126 as yet unmatched pairs. 45059 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,911
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 620576 as yet unmatched pairs. 44496 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr15:40,902,919
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 616456 as yet unmatched pairs. 40372 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr15:42,685,289
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 614229 as yet unmatched pairs. 38144 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,070
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 618262 as yet unmatched pairs. 42172 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:48,495,502
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 609962 as yet unmatched pairs. 33855 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:52,609,067
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 607162 as yet unmatched pairs. 31046 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:60,382,360
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 607047 as yet unmatched pairs. 30926 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:63,675,000
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 602508 as yet unmatched pairs. 26378 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:65,530,702
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 599930 as yet unmatched pairs. 23792 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:70,676,471
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 597141 as yet unmatched pairs. 20996 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:73,699,608
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 594921 as yet unmatched pairs. 18760 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:75,352,210
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 591427 as yet unmatched pairs. 15265 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:78,542,515
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 589311 as yet unmatched pairs. 13138 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr15:84,433,128
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 586470 as yet unmatched pairs. 10293 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:88,859,170
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 584192 as yet unmatched pairs. 8014 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:90,271,522
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 581699 as yet unmatched pairs. 5517 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:96,334,551
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 579070 as yet unmatched pairs. 2878 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr16:58,415
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 577161 as yet unmatched pairs. 87161 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr16:653,270
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 573349 as yet unmatched pairs. 83337 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:1,209,185
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 570046 as yet unmatched pairs. 80029 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:1,446,425
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 567742 as yet unmatched pairs. 77725 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:1,961,193
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 563562 as yet unmatched pairs. 73543 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:2,173,316
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 560228 as yet unmatched pairs. 70203 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,760,462
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 561711 as yet unmatched pairs. 71684 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,050
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 559384 as yet unmatched pairs. 69356 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:3,526,468
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 552023 as yet unmatched pairs. 61991 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:4,694,003
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 549216 as yet unmatched pairs. 59182 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:11,676,257
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 546298 as yet unmatched pairs. 56263 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:14,726,154
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 544253 as yet unmatched pairs. 54212 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:15,071,122
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 542823 as yet unmatched pairs. 52781 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr16:16,283,103
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 540590 as yet unmatched pairs. 50542 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,274
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 539798 as yet unmatched pairs. 49746 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:18,519,249
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 539149 as yet unmatched pairs. 49084 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,521
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 536439 as yet unmatched pairs. 46368 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:21,519,953
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 537724 as yet unmatched pairs. 47650 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:21,972,062
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 535551 as yet unmatched pairs. 45476 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,605
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 535213 as yet unmatched pairs. 45136 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr16:24,953,024
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 532160 as yet unmatched pairs. 42077 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:28,727,026
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 529819 as yet unmatched pairs. 39721 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:29,390,253
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 529747 as yet unmatched pairs. 39643 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,242
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 527201 as yet unmatched pairs. 37097 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,119
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 526430 as yet unmatched pairs. 36320 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:30,305,060
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 522632 as yet unmatched pairs. 32508 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:30,723,188
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 520626 as yet unmatched pairs. 30492 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:31,180,171
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 520615 as yet unmatched pairs. 30471 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:46,682,152
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 514358 as yet unmatched pairs. 24211 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:53,640,957
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 511661 as yet unmatched pairs. 21503 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:56,683,164
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 512639 as yet unmatched pairs. 22477 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:67,029,398
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 506160 as yet unmatched pairs. 15993 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:68,558,004
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 503277 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr16:70,663,686
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 501000 as yet unmatched pairs. 10822 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:75,545,826
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 498390 as yet unmatched pairs. 8201 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:85,665,034
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 496116 as yet unmatched pairs. 5902 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:88,811,821
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 492438 as yet unmatched pairs. 2216 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 3s. Last read position: chr17:1,012,742
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 489869 as yet unmatched pairs. 211675 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:1,681,835
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 487808 as yet unmatched pairs. 209608 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:3,624,140
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 484628 as yet unmatched pairs. 206426 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:4,938,810
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 481501 as yet unmatched pairs. 203284 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,222,070
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 479089 as yet unmatched pairs. 200868 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr17:7,503,735
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 476627 as yet unmatched pairs. 198405 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr17:7,857,023
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 474925 as yet unmatched pairs. 196703 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:8,369,660
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 470456 as yet unmatched pairs. 192231 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,232
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 471449 as yet unmatched pairs. 193224 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,809
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 466667 as yet unmatched pairs. 188433 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:27,640,682
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 463345 as yet unmatched pairs. 185110 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:29,097,336
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 460185 as yet unmatched pairs. 181940 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:31,975,501
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 458402 as yet unmatched pairs. 180156 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:35,984,440
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 455998 as yet unmatched pairs. 177746 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:38,467,048
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 453784 as yet unmatched pairs. 175528 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:39,525,969
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 451457 as yet unmatched pairs. 173191 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,766,306
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 448140 as yet unmatched pairs. 169868 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr17:40,628,843
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 446316 as yet unmatched pairs. 168040 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr17:41,763,110
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 444037 as yet unmatched pairs. 165759 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:42,299,856
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 439521 as yet unmatched pairs. 161242 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:42,794,969
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 437235 as yet unmatched pairs. 158945 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:44,014,785
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 435037 as yet unmatched pairs. 156743 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:45,030,110
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 431674 as yet unmatched pairs. 153375 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:46,513,669
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 429285 as yet unmatched pairs. 150977 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:48,051,394
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 429826 as yet unmatched pairs. 151517 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,455
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 443277 as yet unmatched pairs. 164968 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,368
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 448611 as yet unmatched pairs. 170302 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,888
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 466014 as yet unmatched pairs. 187705 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,497
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 491672 as yet unmatched pairs. 213363 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,096
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 509673 as yet unmatched pairs. 231364 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,750
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 477150 as yet unmatched pairs. 198841 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,173
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 476323 as yet unmatched pairs. 198010 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,489
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 470428 as yet unmatched pairs. 192115 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,006
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 461970 as yet unmatched pairs. 183651 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,356
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 493451 as yet unmatched pairs. 215126 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,425
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 476126 as yet unmatched pairs. 197799 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,474
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 461785 as yet unmatched pairs. 183456 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,829
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 477225 as yet unmatched pairs. 198893 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,982
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 483733 as yet unmatched pairs. 205395 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,356
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 487869 as yet unmatched pairs. 209528 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 59s. Last read position: chr17:50,194,727
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 457761 as yet unmatched pairs. 179416 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 75s. Last read position: chr17:50,195,245
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 455187 as yet unmatched pairs. 176840 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,601
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 489917 as yet unmatched pairs. 211570 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,182
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 450778 as yet unmatched pairs. 172431 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,507
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 490153 as yet unmatched pairs. 211804 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,205
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 479976 as yet unmatched pairs. 201618 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,177
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 410007 as yet unmatched pairs. 131648 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,270
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 437162 as yet unmatched pairs. 158801 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,753
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 403506 as yet unmatched pairs. 125145 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,385,178
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 356236 as yet unmatched pairs. 77873 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:57,105,969
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 354043 as yet unmatched pairs. 75676 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:59,620,142
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 357437 as yet unmatched pairs. 79067 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,226
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 351916 as yet unmatched pairs. 73546 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:62,063,067
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 346538 as yet unmatched pairs. 68168 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:63,756,505
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 344681 as yet unmatched pairs. 66299 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:64,519,398
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 340870 as yet unmatched pairs. 62488 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:67,945,835
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 339869 as yet unmatched pairs. 61481 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:69,035,287
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 336833 as yet unmatched pairs. 58438 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:74,749,216
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 337723 as yet unmatched pairs. 59325 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:75,273,443
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 330129 as yet unmatched pairs. 51718 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:75,702,538
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 327813 as yet unmatched pairs. 49401 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr17:76,101,800
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 325103 as yet unmatched pairs. 46687 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:78,117,467
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 321530 as yet unmatched pairs. 43106 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:79,024,480
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 318815 as yet unmatched pairs. 40375 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:80,340,280
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 316584 as yet unmatched pairs. 38135 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,452,024
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 312707 as yet unmatched pairs. 34255 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,559
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 312038 as yet unmatched pairs. 33574 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,055,810
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 308080 as yet unmatched pairs. 29601 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,782
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 324877 as yet unmatched pairs. 46395 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,319
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 308341 as yet unmatched pairs. 29858 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,702
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 318771 as yet unmatched pairs. 40288 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:82,086,422
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 304651 as yet unmatched pairs. 26163 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,169
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 306317 as yet unmatched pairs. 27828 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:82,090,502
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 298098 as yet unmatched pairs. 19604 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr17:82,092,747
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 305356 as yet unmatched pairs. 26854 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr17:82,255,439
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 281199 as yet unmatched pairs. 2692 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr18:2,706,371
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 278299 as yet unmatched pairs. 17964 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr18:10,773,576
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 275854 as yet unmatched pairs. 15516 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr18:23,649,040
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 273225 as yet unmatched pairs. 12881 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr18:35,140,351
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 270702 as yet unmatched pairs. 10356 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr18:45,943,192
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 268428 as yet unmatched pairs. 8076 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr18:55,254,672
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 265896 as yet unmatched pairs. 5540 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,320
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 265499 as yet unmatched pairs. 5143 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:572,620
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 265310 as yet unmatched pairs. 117095 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:1,032,555
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 257407 as yet unmatched pairs. 109192 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:1,434,808
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 253934 as yet unmatched pairs. 105717 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr19:2,246,814
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 250597 as yet unmatched pairs. 102379 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:3,613,213
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 247581 as yet unmatched pairs. 99361 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr19:4,513,636
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 245705 as yet unmatched pairs. 97478 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 2s. Last read position: chr19:5,649,261
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 241872 as yet unmatched pairs. 93641 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:6,718,272
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 239376 as yet unmatched pairs. 91144 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:8,466,334
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 236627 as yet unmatched pairs. 88390 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:10,396,168
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 233102 as yet unmatched pairs. 84865 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:11,359,517
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 230173 as yet unmatched pairs. 81935 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,693
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 228722 as yet unmatched pairs. 80484 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:14,152,540
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 224256 as yet unmatched pairs. 76018 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,664
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 222349 as yet unmatched pairs. 74109 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:16,325,883
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 219328 as yet unmatched pairs. 71084 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:17,784,760
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 215131 as yet unmatched pairs. 66883 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:18,562,109
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 212841 as yet unmatched pairs. 64592 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:19,542,400
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 209183 as yet unmatched pairs. 60933 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:34,393,251
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 206969 as yet unmatched pairs. 58719 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:35,732,719
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 203547 as yet unmatched pairs. 55289 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr19:38,283,726
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 201744 as yet unmatched pairs. 53484 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr19:39,177,683
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 197725 as yet unmatched pairs. 49458 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,623
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 197053 as yet unmatched pairs. 48785 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:40,377,865
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 192878 as yet unmatched pairs. 44607 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:41,281,264
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 189848 as yet unmatched pairs. 41576 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:42,286,880
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 187317 as yet unmatched pairs. 39045 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:44,235,254
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 183281 as yet unmatched pairs. 35004 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr19:45,355,104
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 180068 as yet unmatched pairs. 31787 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:45,775,013
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 176994 as yet unmatched pairs. 28712 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:47,264,799
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 173837 as yet unmatched pairs. 25554 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,877
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 171852 as yet unmatched pairs. 23565 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:49,466,152
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 167821 as yet unmatched pairs. 19534 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,791,970
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 165203 as yet unmatched pairs. 16913 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:51,719,403
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 161616 as yet unmatched pairs. 13325 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:54,162,160
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 159796 as yet unmatched pairs. 11503 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:55,145,544
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 156620 as yet unmatched pairs. 8324 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:55,692,032
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 153434 as yet unmatched pairs. 5135 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr19:57,927,005
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 150760 as yet unmatched pairs. 2459 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr20:1,375,533
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 149101 as yet unmatched pairs. 43467 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr20:3,861,396
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 145125 as yet unmatched pairs. 39491 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr20:17,949,064
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 142356 as yet unmatched pairs. 36721 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr20:25,675,625
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 139728 as yet unmatched pairs. 34093 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:34,740,775
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 136762 as yet unmatched pairs. 31118 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,206
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 135423 as yet unmatched pairs. 29779 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:40,688,429
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 132580 as yet unmatched pairs. 26933 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:44,906,611
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 128712 as yet unmatched pairs. 23065 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:45,946,231
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 126490 as yet unmatched pairs. 20840 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:48,645,882
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 125164 as yet unmatched pairs. 19514 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr20:50,510,454
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 121480 as yet unmatched pairs. 15829 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr20:53,953,560
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 118415 as yet unmatched pairs. 12764 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,057
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 119868 as yet unmatched pairs. 14215 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:62,324,489
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 113548 as yet unmatched pairs. 7894 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr20:63,287,593
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 110594 as yet unmatched pairs. 4940 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:63,967,430
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 106982 as yet unmatched pairs. 1327 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,905
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 104622 as yet unmatched pairs. 23862 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr21:14,965,038
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 104371 as yet unmatched pairs. 23607 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:29,062,165
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 101103 as yet unmatched pairs. 20338 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr21:33,599,213
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 98398 as yet unmatched pairs. 17631 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr21:37,191,379
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 95837 as yet unmatched pairs. 15066 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr21:43,421,747
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 92930 as yet unmatched pairs. 12159 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr21:45,505,165
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 90153 as yet unmatched pairs. 9382 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr21:45,998,932
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 88307 as yet unmatched pairs. 7536 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr21:46,121,089
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 90592 as yet unmatched pairs. 9817 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr22:17,085,134
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 81119 as yet unmatched pairs. 37495 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr22:20,145,377
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 77785 as yet unmatched pairs. 34161 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr22:23,182,052
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 75560 as yet unmatched pairs. 31931 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:24,233,896
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 72485 as yet unmatched pairs. 28856 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr22:28,799,062
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 74452 as yet unmatched pairs. 30819 records in RAM.
INFO 2026-06-08 09:11:08 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr22:30,334,623
INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 67059 as yet unmatched pairs. 23426 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:33,650,508
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 64441 as yet unmatched pairs. 20808 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr22:37,024,193
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 61346 as yet unmatched pairs. 17713 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr22:38,597,319
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 58092 as yet unmatched pairs. 14459 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,117,673
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 55496 as yet unmatched pairs. 11863 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:42,631,418
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 53644 as yet unmatched pairs. 10010 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr22:46,394,215
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 50127 as yet unmatched pairs. 6493 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr22:50,447,160
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 46615 as yet unmatched pairs. 2981 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chrX:2,490,097
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 42894 as yet unmatched pairs. 37669 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:9,692,154
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 40519 as yet unmatched pairs. 35294 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:23,988,072
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 37984 as yet unmatched pairs. 32753 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:41,346,327
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 36192 as yet unmatched pairs. 30961 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chrX:48,059,784
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 32917 as yet unmatched pairs. 27686 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:52,948,143
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 30441 as yet unmatched pairs. 25208 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chrX:53,992,783
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 27920 as yet unmatched pairs. 22687 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:68,717,823
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 25188 as yet unmatched pairs. 19955 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chrX:72,275,688
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 22424 as yet unmatched pairs. 17191 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:100,831,533
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 20463 as yet unmatched pairs. 15230 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:110,676,303
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 18151 as yet unmatched pairs. 12918 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chrX:129,794,073
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 15241 as yet unmatched pairs. 10002 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:149,930,683
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 13013 as yet unmatched pairs. 7774 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,032,498
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 10370 as yet unmatched pairs. 5131 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,411,811
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 7885 as yet unmatched pairs. 2646 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chrM:10,181
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 5008 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: KI270733.1:126,201
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 3198 as yet unmatched pairs. 3184 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 628881773 records. 0 pairs never matched.
INFO 2026-06-08 09:12:47 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140016; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:47 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:12:51 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:12:51 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder Large duplicate set. size = 1595
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,402
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,058
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,542
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:13:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,694
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,610
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,587
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,076
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1748
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,642
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,384
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,355
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,269
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,616
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,267
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,396
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1719
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,540
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,010
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,714
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,577
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1614
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,637
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,857
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,309
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,671
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1480
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,445
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,060
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:13:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,427
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1288
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,838
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1645
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,579
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,422
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,043
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,187
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,733
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,187
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,390
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,464
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,703
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,009
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,401
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 2059
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,766
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,260
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,185
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 2281
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,945
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,191
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,694
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,505
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,764
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 2767
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,003
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,257
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,359
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,018
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1728
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,962
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1436
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,565
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 2572
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,478
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,723
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,473
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,418
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,849
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1288
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,144
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,091
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,252
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1742
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1752
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,459
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1806
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,250
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 3038
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,605
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,419
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,625
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,891
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1904
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,634
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,360
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,913
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,718
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,351
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,641
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,154
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,482
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:13:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,803
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,049
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 2260
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,150
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,847
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,492
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,506
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,327
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1885
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,069
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,634
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,627
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,497
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,420
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,405
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,298
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,829
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,573
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,071
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 2075
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,637
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,348
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 09:13:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,785
INFO 2026-06-08 09:13:44 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:13:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,707
INFO 2026-06-08 09:14:12 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:14:12 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:15:04 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:15:05 MarkDuplicates After generateDuplicateIndexes freeMemory: 203903896; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:15:05 MarkDuplicates Marking 284054933 records as duplicates.
INFO 2026-06-08 09:15:05 MarkDuplicates Found 28842983 optical duplicate clusters.
INFO 2026-06-08 09:15:05 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:15:28 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:22s. Time for last 10,000,000: 22s. Last read position: chr1:23,961,793
INFO 2026-06-08 09:15:46 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:40s. Time for last 10,000,000: 18s. Last read position: chr1:45,640,174
INFO 2026-06-08 09:16:03 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:57s. Time for last 10,000,000: 17s. Last read position: chr1:116,984,714
INFO 2026-06-08 09:16:20 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 17s. Last read position: chr1:155,055,792
INFO 2026-06-08 09:16:37 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 16s. Last read position: chr1:186,318,812
INFO 2026-06-08 09:16:55 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 17s. Last read position: chr2:1,643,451
INFO 2026-06-08 09:17:12 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:06s. Time for last 10,000,000: 17s. Last read position: chr2:38,071,148
INFO 2026-06-08 09:17:29 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 17s. Last read position: chr2:99,594,199
INFO 2026-06-08 09:17:47 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 17s. Last read position: chr2:188,988,083
INFO 2026-06-08 09:18:05 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 17s. Last read position: chr2:215,397,689
INFO 2026-06-08 09:18:22 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 17s. Last read position: chr2:237,493,431
INFO 2026-06-08 09:18:40 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 17s. Last read position: chr3:49,163,013
INFO 2026-06-08 09:18:57 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 17s. Last read position: chr3:133,834,570
INFO 2026-06-08 09:19:15 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 17s. Last read position: chr4:1,805,794
INFO 2026-06-08 09:19:32 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 17s. Last read position: chr4:99,906,520
INFO 2026-06-08 09:19:50 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 17s. Last read position: chr5:34,686,903
INFO 2026-06-08 09:20:08 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 17s. Last read position: chr5:134,782,989
INFO 2026-06-08 09:20:25 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 17s. Last read position: chr5:172,935,227
INFO 2026-06-08 09:20:42 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 17s. Last read position: chr6:31,581,561
INFO 2026-06-08 09:21:00 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 17s. Last read position: chr6:44,248,644
INFO 2026-06-08 09:21:17 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 17s. Last read position: chr6:137,871,223
INFO 2026-06-08 09:21:34 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 17s. Last read position: chr7:22,145,206
INFO 2026-06-08 09:21:52 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:46s. Time for last 10,000,000: 17s. Last read position: chr7:92,236,411
INFO 2026-06-08 09:22:10 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 17s. Last read position: chr7:131,662,015
INFO 2026-06-08 09:22:27 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 17s. Last read position: chr8:37,841,812
INFO 2026-06-08 09:22:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 17s. Last read position: chr8:115,619,896
INFO 2026-06-08 09:23:02 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 17s. Last read position: chr9:33,923,362
INFO 2026-06-08 09:23:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 17s. Last read position: chr9:127,682,529
INFO 2026-06-08 09:23:37 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 17s. Last read position: chr10:20,164,511
INFO 2026-06-08 09:23:55 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 17s. Last read position: chr10:95,872,160
INFO 2026-06-08 09:24:12 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 17s. Last read position: chr11:12,518,477
INFO 2026-06-08 09:24:30 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 17s. Last read position: chr11:62,797,326
INFO 2026-06-08 09:24:47 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 17s. Last read position: chr11:73,311,442
INFO 2026-06-08 09:25:05 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:59s. Time for last 10,000,000: 17s. Last read position: chr12:6,330,622
INFO 2026-06-08 09:25:22 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:17s. Time for last 10,000,000: 17s. Last read position: chr12:52,054,527
INFO 2026-06-08 09:25:40 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 17s. Last read position: chr12:75,490,506
INFO 2026-06-08 09:25:58 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 17s. Last read position: chr12:124,012,695
INFO 2026-06-08 09:26:15 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 17s. Last read position: chr13:113,306,529
INFO 2026-06-08 09:26:33 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 17s. Last read position: chr14:74,555,626
INFO 2026-06-08 09:26:51 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 17s. Last read position: chr15:40,902,919
INFO 2026-06-08 09:27:08 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 17s. Last read position: chr15:75,352,210
INFO 2026-06-08 09:27:26 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 18s. Last read position: chr16:1,961,193
INFO 2026-06-08 09:27:43 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 17s. Last read position: chr16:18,318,274
INFO 2026-06-08 09:28:01 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 17s. Last read position: chr16:30,070,119
INFO 2026-06-08 09:28:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 17s. Last read position: chr16:75,545,826
INFO 2026-06-08 09:28:36 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 17s. Last read position: chr17:8,369,660
INFO 2026-06-08 09:28:53 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 17s. Last read position: chr17:40,628,843
INFO 2026-06-08 09:29:11 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 17s. Last read position: chr17:50,186,888
INFO 2026-06-08 09:29:28 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 17s. Last read position: chr17:50,192,829
INFO 2026-06-08 09:29:45 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 17s. Last read position: chr17:50,199,270
INFO 2026-06-08 09:30:02 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 17s. Last read position: chr17:69,035,287
INFO 2026-06-08 09:30:20 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 17s. Last read position: chr17:82,055,810
INFO 2026-06-08 09:30:37 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 17s. Last read position: chr18:10,773,576
INFO 2026-06-08 09:30:54 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:49s. Time for last 10,000,000: 17s. Last read position: chr19:3,613,213
INFO 2026-06-08 09:31:12 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:07s. Time for last 10,000,000: 17s. Last read position: chr19:16,325,883
INFO 2026-06-08 09:31:30 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 17s. Last read position: chr19:41,281,264
INFO 2026-06-08 09:31:47 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:41s. Time for last 10,000,000: 17s. Last read position: chr19:54,162,160
INFO 2026-06-08 09:32:04 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:59s. Time for last 10,000,000: 17s. Last read position: chr20:40,688,429
INFO 2026-06-08 09:32:22 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 17s. Last read position: chr21:8,258,905
INFO 2026-06-08 09:32:39 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:33s. Time for last 10,000,000: 17s. Last read position: chr22:20,145,377
INFO 2026-06-08 09:32:56 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:51s. Time for last 10,000,000: 17s. Last read position: chr22:46,394,215
INFO 2026-06-08 09:33:14 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:08s. Time for last 10,000,000: 17s. Last read position: chrX:72,275,688
INFO 2026-06-08 09:33:31 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:26s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:33:36 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:33:36 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:33:36 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:33:36 MarkDuplicates Before output close freeMemory: 203868824; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:33:37 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:33:37 MarkDuplicates After output close freeMemory: 104110168; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:33:37 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.99 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory