File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/63246d4028df7aab7b6236d7980bbc/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:02:10
                             Started mapping on |	Jun 08 10:08:36
                                    Finished on |	Jun 08 10:53:51
       Mapping speed, Million of reads per hour |	325.04

                          Number of input reads |	245131577
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	235083840
                        Uniquely mapped reads % |	95.90%
                          Average mapped length |	249.12
                       Number of splices: Total |	231680850
            Number of splices: Annotated (sjdb) |	228425195
                       Number of splices: GT/AG |	228954299
                       Number of splices: GC/AG |	1512678
                       Number of splices: AT/AC |	179950
               Number of splices: Non-canonical |	1033923
                      Mismatch rate per base, % |	0.33%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7212392
             % of reads mapped to multiple loci |	2.94%
        Number of reads mapped to too many loci |	337819
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2222186
                 % of reads unmapped: too short |	0.91%
                Number of reads unmapped: other |	275340
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%