File Info

Filename
samplesheet.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/e8227dd82b6f1c24842f8d3e2ae9b1/samplesheet.csv
Size
28.4 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:SAMPLESHEET_FROM_MERGED (samplesheet)
Attempt

Content

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sample,sample_type,fastq_1,fastq_2,strandedness
FFPE_HD789_01_RNA_13_B23MVV7LT4_1,POSITIVE_CONTROL ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3c624468276cce347b8e7d60e730e6/FFPE_HD789_01_RNA_13_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3c624468276cce347b8e7d60e730e6/FFPE_HD789_01_RNA_13_B23MVV7LT4_1_R2.fastq.gz,reverse
FFPE_V4_0002_RNA_0001_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/428090b0f171fa0f135969444f4a49/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/428090b0f171fa0f135969444f4a49/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00569_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/75/39d8650bc975863ecf4afebeee41c8/tih_rna_sample_00569_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/75/39d8650bc975863ecf4afebeee41c8/tih_rna_sample_00569_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00570_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/406d5593bb1998db9e0f2f36e280c6/tih_rna_sample_00570_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/406d5593bb1998db9e0f2f36e280c6/tih_rna_sample_00570_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00572_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/e1a8ed3051bc6ebb44e62f990acf39/tih_rna_sample_00572_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/e1a8ed3051bc6ebb44e62f990acf39/tih_rna_sample_00572_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00574_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/b2d7e730dcea6d25fabd0917fce200/tih_rna_sample_00574_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/b2d7e730dcea6d25fabd0917fce200/tih_rna_sample_00574_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00575_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/f8aae9fd5d36c603c9de451ade4d99/tih_rna_sample_00575_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/f8aae9fd5d36c603c9de451ade4d99/tih_rna_sample_00575_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00576_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/549cdb46828f8a98eaf7c6a8abf918/tih_rna_sample_00576_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/549cdb46828f8a98eaf7c6a8abf918/tih_rna_sample_00576_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00581_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/ac5b054876f943b9171432a42b8b1c/tih_rna_sample_00581_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/ac5b054876f943b9171432a42b8b1c/tih_rna_sample_00581_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00582_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/75/4e1e0d99c3115024a3cacf5d17d2f0/tih_rna_sample_00582_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/75/4e1e0d99c3115024a3cacf5d17d2f0/tih_rna_sample_00582_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00583_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/10/91c88421f9d9c43200ad27900f4b6f/tih_rna_sample_00583_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/10/91c88421f9d9c43200ad27900f4b6f/tih_rna_sample_00583_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00584_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/00/95fe6b7e2f3b370af3e771a956bae2/tih_rna_sample_00584_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/00/95fe6b7e2f3b370af3e771a956bae2/tih_rna_sample_00584_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00586_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/a96ad33741e69ca97a03339e9ab3b4/tih_rna_sample_00586_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/a96ad33741e69ca97a03339e9ab3b4/tih_rna_sample_00586_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00588_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/6f5a83f5c8ce7263522c9e987afec8/tih_rna_sample_00588_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/6f5a83f5c8ce7263522c9e987afec8/tih_rna_sample_00588_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00591_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/3fe948bf69fd609bd4546fd92ffb52/tih_rna_sample_00591_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/3fe948bf69fd609bd4546fd92ffb52/tih_rna_sample_00591_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00592_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/12b16d4eaa13d9be6a0b03cd352e8a/tih_rna_sample_00592_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/12b16d4eaa13d9be6a0b03cd352e8a/tih_rna_sample_00592_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00594_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ca4096b197627f79d56e9584e66dad/tih_rna_sample_00594_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ca4096b197627f79d56e9584e66dad/tih_rna_sample_00594_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00596_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/5d13b6552d701c41f455f3d5f18929/tih_rna_sample_00596_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/5d13b6552d701c41f455f3d5f18929/tih_rna_sample_00596_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00598_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7f6f6d7f40375d0be5ca3b01c397b2/tih_rna_sample_00598_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7f6f6d7f40375d0be5ca3b01c397b2/tih_rna_sample_00598_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00599_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ae6b63d6425c98b99d543120f96851/tih_rna_sample_00599_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ae6b63d6425c98b99d543120f96851/tih_rna_sample_00599_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00602_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/56/e7332706e95efdf7ac209a9a39892d/tih_rna_sample_00602_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/56/e7332706e95efdf7ac209a9a39892d/tih_rna_sample_00602_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00604_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/941ae977ea58cc26f9e2bdf40102d3/tih_rna_sample_00604_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/941ae977ea58cc26f9e2bdf40102d3/tih_rna_sample_00604_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00612_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/52/62dc7948d91866afed35795fe23988/tih_rna_sample_00612_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/52/62dc7948d91866afed35795fe23988/tih_rna_sample_00612_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00613_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/21/3359abdd8814e5e1ea599e1149b4d7/tih_rna_sample_00613_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/21/3359abdd8814e5e1ea599e1149b4d7/tih_rna_sample_00613_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00614_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/bb214782e39e6237202dd682187366/tih_rna_sample_00614_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/bb214782e39e6237202dd682187366/tih_rna_sample_00614_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00616_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/04f8eac5923da2611b04e89791a6dc/tih_rna_sample_00616_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/04f8eac5923da2611b04e89791a6dc/tih_rna_sample_00616_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00618_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/71/13d9fe63cddc214abc026bc6f1a532/tih_rna_sample_00618_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/71/13d9fe63cddc214abc026bc6f1a532/tih_rna_sample_00618_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00619_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d0302074403ce2d325cae0a97ec416/tih_rna_sample_00619_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d0302074403ce2d325cae0a97ec416/tih_rna_sample_00619_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00622_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0b51f5cc671330c14bbf1b7d2bb020/tih_rna_sample_00622_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0b51f5cc671330c14bbf1b7d2bb020/tih_rna_sample_00622_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00624_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/54/d85991a9a9b8bfc473e07b6970715a/tih_rna_sample_00624_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/54/d85991a9a9b8bfc473e07b6970715a/tih_rna_sample_00624_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00626_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/97/d25b4315038cfca72e099b62775ca8/tih_rna_sample_00626_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/97/d25b4315038cfca72e099b62775ca8/tih_rna_sample_00626_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00628_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/8e3b64e345ca8ee996845907c72390/tih_rna_sample_00628_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/8e3b64e345ca8ee996845907c72390/tih_rna_sample_00628_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00629_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/26/9d4388cc974bf7e23261d190e81e3c/tih_rna_sample_00629_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/26/9d4388cc974bf7e23261d190e81e3c/tih_rna_sample_00629_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00635_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/a828a497e62de95dce0f823b8e33d7/tih_rna_sample_00635_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/a828a497e62de95dce0f823b8e33d7/tih_rna_sample_00635_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00636_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/c80bea5b4a69a33be776927c7ec598/tih_rna_sample_00636_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/c80bea5b4a69a33be776927c7ec598/tih_rna_sample_00636_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00637_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/05/5f7ca2f9c71b5f45e1e9e54c2ac4e8/tih_rna_sample_00637_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/05/5f7ca2f9c71b5f45e1e9e54c2ac4e8/tih_rna_sample_00637_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00638_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e88b5fe3ee56d90f8900c658bd66b6/tih_rna_sample_00638_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e88b5fe3ee56d90f8900c658bd66b6/tih_rna_sample_00638_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00639_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a43ec33efc2d224b34e9346c8d50a3/tih_rna_sample_00639_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a43ec33efc2d224b34e9346c8d50a3/tih_rna_sample_00639_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00641_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/fa3787139aa03f0ed937a8e45f1e2c/tih_rna_sample_00641_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/fa3787139aa03f0ed937a8e45f1e2c/tih_rna_sample_00641_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00643_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2bb8c8a7264478fc1c47c5c1dff285/tih_rna_sample_00643_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2bb8c8a7264478fc1c47c5c1dff285/tih_rna_sample_00643_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00644_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/e3223657f54a078e4e013740146e6f/tih_rna_sample_00644_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/e3223657f54a078e4e013740146e6f/tih_rna_sample_00644_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00649_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/80/6ee07cd1880e0be44abd9fbe7c0412/tih_rna_sample_00649_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/80/6ee07cd1880e0be44abd9fbe7c0412/tih_rna_sample_00649_B23MVV7LT4_1_R2.fastq.gz,reverse
tih_rna_sample_00650_B23MVV7LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/17/47596fd298853b98f9e2b0c41da579/tih_rna_sample_00650_B23MVV7LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/17/47596fd298853b98f9e2b0c41da579/tih_rna_sample_00650_B23MVV7LT4_1_R2.fastq.gz,reverse
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