Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/db656108731ba2de3a43e386ace28f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/db656108731ba2de3a43e386ace28f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0e201f0255b51ccc6c52864a1766dd/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT FFPE_HD789_01_RNA_13_B23MVV7LT4_1.md.bam --METRICS_FILE FFPE_HD789_01_RNA_13_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:36:36.818 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:36:36 GMT 2026] MarkDuplicates --INPUT FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT FFPE_HD789_01_RNA_13_B23MVV7LT4_1.md.bam --METRICS_FILE FFPE_HD789_01_RNA_13_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:36:36 GMT 2026] Executing as ?@nf-79db656108731ba2de3a43e386ace28f-b42b2-7lkrq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:36:36 MarkDuplicates Start of doWork freeMemory: 105828328; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:36:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:36:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,053,864
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 8206 as yet unmatched pairs. 4100 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,527,710
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 9307 as yet unmatched pairs. 1312 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:3,787,208
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 12978 as yet unmatched pairs. 1264 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,015,374
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 17074 as yet unmatched pairs. 2164 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:10,119,575
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 18153 as yet unmatched pairs. 495 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:11,970,685
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 21805 as yet unmatched pairs. 871 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:16,133,249
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 26182 as yet unmatched pairs. 2424 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,112,808
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 28478 as yet unmatched pairs. 1417 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:20,776,639
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 30690 as yet unmatched pairs. 827 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:22,892,914
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 33883 as yet unmatched pairs. 912 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:24,669,143
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 35910 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:26,795,213
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 38880 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:28,535,066
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 44549 as yet unmatched pairs. 3096 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:31,790,891
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 45787 as yet unmatched pairs. 1105 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,772,079
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 49441 as yet unmatched pairs. 1826 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:35,418,457
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 51372 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:37,880,109
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 54191 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:40,069,757
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 57672 as yet unmatched pairs. 1123 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:43,172,143
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 59530 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:44,645,240
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 64408 as yet unmatched pairs. 1786 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:46,193,318
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 66836 as yet unmatched pairs. 1559 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:52,423,792
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 68441 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,228
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 75908 as yet unmatched pairs. 4731 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:67,413,120
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 77716 as yet unmatched pairs. 3571 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:84,670,651
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 77044 as yet unmatched pairs. 482 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:92,841,768
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 80507 as yet unmatched pairs. 1237 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:108,157,473
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 82415 as yet unmatched pairs. 843 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:110,342,070
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 86109 as yet unmatched pairs. 1759 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:114,397,793
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 88546 as yet unmatched pairs. 1477 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:116,944,931
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 90820 as yet unmatched pairs. 1128 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,506
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 95954 as yet unmatched pairs. 3469 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:146,116,001
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 94320 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:149,055,678
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 95757 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,841,056
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 98124 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,215
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 100077 as yet unmatched pairs. 1294 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:150,625,630
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 103910 as yet unmatched pairs. 2305 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:151,660,797
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 104499 as yet unmatched pairs. 251 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:153,642,282
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 107866 as yet unmatched pairs. 1440 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,930
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 117756 as yet unmatched pairs. 8659 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:154,965,640
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 119583 as yet unmatched pairs. 7813 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:155,198,571
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 115113 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,915,939
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 118254 as yet unmatched pairs. 919 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,212
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 123294 as yet unmatched pairs. 2366 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:156,544,407
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 124621 as yet unmatched pairs. 712 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:160,093,838
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 127751 as yet unmatched pairs. 788 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:162,581,307
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 130693 as yet unmatched pairs. 947 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,497
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 133196 as yet unmatched pairs. 1020 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:179,118,756
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 135151 as yet unmatched pairs. 440 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:183,124,679
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 138744 as yet unmatched pairs. 1075 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:186,337,013
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 142326 as yet unmatched pairs. 2168 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:200,850,066
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 143055 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:203,020,846
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 146197 as yet unmatched pairs. 795 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:206,393,595
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 149189 as yet unmatched pairs. 1378 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:209,630,725
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 153530 as yet unmatched pairs. 2621 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:215,579,031
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 154044 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:223,747,031
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 161778 as yet unmatched pairs. 5781 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,343
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 163627 as yet unmatched pairs. 5079 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:228,335,246
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 161982 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,383
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 168807 as yet unmatched pairs. 3363 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:244,055,159
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 168817 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:248,856,361
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 171803 as yet unmatched pairs. 788 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:10,128,924
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 175969 as yet unmatched pairs. 173299 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:15,603,852
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 184043 as yet unmatched pairs. 181340 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:23,642,624
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 180270 as yet unmatched pairs. 177536 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:27,053,482
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 183087 as yet unmatched pairs. 180313 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,621,304
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 186230 as yet unmatched pairs. 183424 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,463,249
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 190530 as yet unmatched pairs. 187694 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 288352 as yet unmatched pairs. 178442 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 986336 as yet unmatched pairs. 123314 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 1479248 as yet unmatched pairs. 84489 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 1487714 as yet unmatched pairs. 83881 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:33,347,443
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 1584094 as yet unmatched pairs. 76515 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:42,288,253
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 1584041 as yet unmatched pairs. 76406 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,778
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 1583342 as yet unmatched pairs. 75654 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:54,973,164
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 1582627 as yet unmatched pairs. 74895 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:61,492,350
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 1574690 as yet unmatched pairs. 66910 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:69,400,399
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 1571357 as yet unmatched pairs. 63534 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:73,572,739
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 1568547 as yet unmatched pairs. 60669 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:74,878,780
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 1565931 as yet unmatched pairs. 58013 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:86,210,525
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 1563067 as yet unmatched pairs. 55079 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:96,283,867
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 1562615 as yet unmatched pairs. 54564 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:99,438,635
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 1558050 as yet unmatched pairs. 49969 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:108,719,540
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 1556127 as yet unmatched pairs. 48002 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:110,087,636
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 1557490 as yet unmatched pairs. 49332 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:112,756,683
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 1551637 as yet unmatched pairs. 43443 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:127,874,044
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 1549371 as yet unmatched pairs. 41066 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:135,772,495
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 1547942 as yet unmatched pairs. 39575 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:158,625,234
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 1545090 as yet unmatched pairs. 36655 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:169,942,575
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 1541663 as yet unmatched pairs. 33173 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:177,219,595
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 1540532 as yet unmatched pairs. 32016 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:186,668,788
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 1537555 as yet unmatched pairs. 28995 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:197,420,314
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 1535633 as yet unmatched pairs. 27045 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:201,761,289
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 1532557 as yet unmatched pairs. 23939 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:208,326,326
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 1529546 as yet unmatched pairs. 20870 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,435,710
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 1528810 as yet unmatched pairs. 20121 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:218,650,459
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 1524410 as yet unmatched pairs. 15647 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:221,748,625
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 1520527 as yet unmatched pairs. 11725 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:231,062,651
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 1518876 as yet unmatched pairs. 10022 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:232,407,634
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 1516054 as yet unmatched pairs. 7143 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:240,130,828
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 1512778 as yet unmatched pairs. 3777 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:241,633,596
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 1511420 as yet unmatched pairs. 2364 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:10,085,908
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 1507437 as yet unmatched pairs. 85181 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:14,129,414
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 1504451 as yet unmatched pairs. 82103 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:31,533,174
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 1503530 as yet unmatched pairs. 81098 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:38,141,134
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 1499749 as yet unmatched pairs. 77272 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,122
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 1496877 as yet unmatched pairs. 74356 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:45,516,143
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 1493510 as yet unmatched pairs. 70946 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:47,772,868
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 1490499 as yet unmatched pairs. 67890 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:48,604,281
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 1488991 as yet unmatched pairs. 66340 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:49,100,262
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 1485986 as yet unmatched pairs. 63312 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:49,713,320
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 1481493 as yet unmatched pairs. 58795 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:51,398,784
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 1477984 as yet unmatched pairs. 55251 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,528,184
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 1476283 as yet unmatched pairs. 53493 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:57,240,493
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 1472634 as yet unmatched pairs. 49802 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:63,990,732
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 1470222 as yet unmatched pairs. 47336 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:98,593,377
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 1468036 as yet unmatched pairs. 45051 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:101,821,888
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 1465150 as yet unmatched pairs. 42117 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:116,645,776
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 1462569 as yet unmatched pairs. 39486 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:124,773,800
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 1460751 as yet unmatched pairs. 37617 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:128,060,162
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1459924 as yet unmatched pairs. 36761 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:129,570,920
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 1454414 as yet unmatched pairs. 31207 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:136,151,217
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 1451224 as yet unmatched pairs. 27951 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:146,070,789
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 1449116 as yet unmatched pairs. 25765 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:154,293,780
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 1446672 as yet unmatched pairs. 23274 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:169,381,215
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 1443223 as yet unmatched pairs. 19774 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:180,968,233
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 1442283 as yet unmatched pairs. 18784 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:184,304,310
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 1441933 as yet unmatched pairs. 18395 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:185,473,583
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1435632 as yet unmatched pairs. 12053 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:193,648,851
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 1434087 as yet unmatched pairs. 10454 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:195,778,912
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 1435227 as yet unmatched pairs. 11570 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,861
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1444606 as yet unmatched pairs. 20927 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,035
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 1442050 as yet unmatched pairs. 18368 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,947
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 1431544 as yet unmatched pairs. 7847 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:197,622,187
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1424572 as yet unmatched pairs. 806 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr4:1,655,487
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1421110 as yet unmatched pairs. 40576 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr4:2,513,675
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 1418818 as yet unmatched pairs. 38247 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:6,674,565
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 1414887 as yet unmatched pairs. 34261 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:19,814,059
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 1412075 as yet unmatched pairs. 31378 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:38,137,216
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 1409872 as yet unmatched pairs. 28983 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:47,451,538
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 1407482 as yet unmatched pairs. 26530 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:56,977,432
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 1404768 as yet unmatched pairs. 23784 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:75,955,972
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 1402100 as yet unmatched pairs. 21053 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:82,354,139
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 1401184 as yet unmatched pairs. 20096 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:90,309,266
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 1396351 as yet unmatched pairs. 15232 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr4:107,659,959
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 1394298 as yet unmatched pairs. 13126 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:122,239,715
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 1392038 as yet unmatched pairs. 10806 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:143,911,436
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 1388986 as yet unmatched pairs. 7706 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:151,703,271
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 1387031 as yet unmatched pairs. 5708 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:174,508,724
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 1384460 as yet unmatched pairs. 3088 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:186,707,844
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 1382401 as yet unmatched pairs. 979 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 3s. Last read position: chr5:1,878,107
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1378985 as yet unmatched pairs. 77816 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:14,280,409
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1382941 as yet unmatched pairs. 81726 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,808
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 1377523 as yet unmatched pairs. 76283 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:33,448,575
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 1372766 as yet unmatched pairs. 71483 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:38,978,629
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 1367778 as yet unmatched pairs. 66449 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:55,347,099
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 1365415 as yet unmatched pairs. 64048 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:67,162,671
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 1363086 as yet unmatched pairs. 61641 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:72,196,147
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 1361189 as yet unmatched pairs. 59696 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:77,440,885
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 1358713 as yet unmatched pairs. 57193 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:87,379,821
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1356840 as yet unmatched pairs. 55266 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:98,856,417
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 1354167 as yet unmatched pairs. 52534 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:119,509,188
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 1353190 as yet unmatched pairs. 51492 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:132,210,494
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 1349025 as yet unmatched pairs. 47293 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:134,225,626
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 1347522 as yet unmatched pairs. 45742 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:137,639,871
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 1343123 as yet unmatched pairs. 41296 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:138,561,767
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 1342742 as yet unmatched pairs. 40890 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:140,482,598
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 1338437 as yet unmatched pairs. 36524 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:141,571,970
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 1337080 as yet unmatched pairs. 35140 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:146,203,621
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 1332707 as yet unmatched pairs. 30723 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,563
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1334103 as yet unmatched pairs. 32091 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:151,799,951
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1331401 as yet unmatched pairs. 29344 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:160,010,635
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 1325119 as yet unmatched pairs. 23002 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,054
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1368198 as yet unmatched pairs. 66057 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,953
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1350905 as yet unmatched pairs. 48744 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:173,318,193
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1320095 as yet unmatched pairs. 17903 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:177,306,454
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1318357 as yet unmatched pairs. 16135 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:178,204,985
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1313899 as yet unmatched pairs. 11637 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,238
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1311561 as yet unmatched pairs. 9247 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,449
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1321932 as yet unmatched pairs. 19591 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,100
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1325737 as yet unmatched pairs. 23353 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr6:3,226,167
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1301545 as yet unmatched pairs. 81080 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr6:10,697,364
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1298675 as yet unmatched pairs. 78180 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:24,533,621
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1295655 as yet unmatched pairs. 75076 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,932
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1297346 as yet unmatched pairs. 76732 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:27,133,348
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1300679 as yet unmatched pairs. 80053 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:27,837,914
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1288639 as yet unmatched pairs. 67994 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:30,345,179
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 1286933 as yet unmatched pairs. 66268 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:30,896,662
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 1283559 as yet unmatched pairs. 62837 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,176
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1282732 as yet unmatched pairs. 61989 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,779,281
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1278787 as yet unmatched pairs. 58005 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,979,502
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 1274674 as yet unmatched pairs. 53876 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:33,276,215
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1274392 as yet unmatched pairs. 53576 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:33,680,374
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 1273121 as yet unmatched pairs. 52270 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:34,982,767
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1266260 as yet unmatched pairs. 45354 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:37,369,067
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1262882 as yet unmatched pairs. 41906 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:43,129,060
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1262720 as yet unmatched pairs. 41702 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:44,232,964
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 1257895 as yet unmatched pairs. 36856 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:47,533,625
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 1254470 as yet unmatched pairs. 33400 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,487
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1252981 as yet unmatched pairs. 31777 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:75,666,924
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1249894 as yet unmatched pairs. 28594 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:87,257,011
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 1246983 as yet unmatched pairs. 25661 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:100,848,679
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1244617 as yet unmatched pairs. 23260 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:111,344,003
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1241647 as yet unmatched pairs. 20254 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:122,454,190
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1239875 as yet unmatched pairs. 18473 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:136,362,551
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 1237043 as yet unmatched pairs. 15576 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:144,730,367
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 1233641 as yet unmatched pairs. 12153 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,518
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 1231850 as yet unmatched pairs. 10348 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,999
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1232258 as yet unmatched pairs. 10718 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,259
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1246917 as yet unmatched pairs. 25362 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:167,911,380
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1223358 as yet unmatched pairs. 1777 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 3s. Last read position: chr7:1,471,141
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1223024 as yet unmatched pairs. 102891 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr7:2,658,405
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 1216482 as yet unmatched pairs. 96307 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:5,513,708
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1211495 as yet unmatched pairs. 91280 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,186
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1241290 as yet unmatched pairs. 121048 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:6,402,340
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1207630 as yet unmatched pairs. 87353 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:21,429,954
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 1203288 as yet unmatched pairs. 82962 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:27,748,517
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 1201598 as yet unmatched pairs. 81243 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:37,921,192
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1197994 as yet unmatched pairs. 77618 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:44,568,140
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1196519 as yet unmatched pairs. 76098 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr7:48,101,815
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1194550 as yet unmatched pairs. 74090 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:56,051,797
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1190415 as yet unmatched pairs. 69932 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,218
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 1189182 as yet unmatched pairs. 68659 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:73,738,688
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1184906 as yet unmatched pairs. 64366 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr7:75,198,031
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 1183832 as yet unmatched pairs. 63266 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,828
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 1195695 as yet unmatched pairs. 75100 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:82,952,781
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1177237 as yet unmatched pairs. 56578 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr7:92,397,921
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1175980 as yet unmatched pairs. 55292 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr7:97,864,481
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1175966 as yet unmatched pairs. 55258 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:99,354,072
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1182761 as yet unmatched pairs. 62016 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,094,198
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1171289 as yet unmatched pairs. 50528 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,554,249
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1163962 as yet unmatched pairs. 43184 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,885,749
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1161536 as yet unmatched pairs. 40723 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:102,446,891
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1157459 as yet unmatched pairs. 36633 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:105,118,000
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 1155425 as yet unmatched pairs. 34579 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:112,330,107
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1152796 as yet unmatched pairs. 31891 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,615
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1166991 as yet unmatched pairs. 46054 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:116,769,623
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 1169691 as yet unmatched pairs. 48748 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:118,185,541
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1146315 as yet unmatched pairs. 25340 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr7:127,991,029
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1154984 as yet unmatched pairs. 33968 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:129,858,930
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 1141008 as yet unmatched pairs. 19954 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr7:137,905,779
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1141439 as yet unmatched pairs. 20354 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:140,781,617
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1137288 as yet unmatched pairs. 16118 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:144,284,994
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1133767 as yet unmatched pairs. 12581 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,575
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1134361 as yet unmatched pairs. 13149 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:151,236,421
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 1126371 as yet unmatched pairs. 5145 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:157,248,540
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1123404 as yet unmatched pairs. 2140 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 57s. Last read position: chr8:11,845,052
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 1120017 as yet unmatched pairs. 82480 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:22,207,348
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1116995 as yet unmatched pairs. 79432 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:23,852,314
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1115333 as yet unmatched pairs. 77747 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:30,727,647
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1111032 as yet unmatched pairs. 73389 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:39,026,691
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 1109910 as yet unmatched pairs. 72231 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:47,817,471
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1107199 as yet unmatched pairs. 69485 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:51,861,041
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1103310 as yet unmatched pairs. 65573 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:60,853,161
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1101168 as yet unmatched pairs. 63379 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:70,583,310
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1101179 as yet unmatched pairs. 63346 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:86,546,603
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1097719 as yet unmatched pairs. 59868 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:96,333,752
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1094594 as yet unmatched pairs. 56706 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,665
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1099906 as yet unmatched pairs. 61985 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:100,924,929
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1096560 as yet unmatched pairs. 58588 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:108,203,486
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1095399 as yet unmatched pairs. 57386 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:119,801,935
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1084009 as yet unmatched pairs. 45962 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:125,430,728
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1080956 as yet unmatched pairs. 42852 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr8:127,740,632
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1087522 as yet unmatched pairs. 49398 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:140,879,541
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1077507 as yet unmatched pairs. 39310 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,698
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1085955 as yet unmatched pairs. 47725 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr8:143,808,844
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1066929 as yet unmatched pairs. 28677 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,582
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1064118 as yet unmatched pairs. 25851 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,273
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1069127 as yet unmatched pairs. 30848 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,034
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1058746 as yet unmatched pairs. 20442 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,935,013
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1058303 as yet unmatched pairs. 19970 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:144,192,347
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1050790 as yet unmatched pairs. 12433 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:144,423,818
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1045962 as yet unmatched pairs. 7581 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,372
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1048255 as yet unmatched pairs. 9833 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:12,821,575
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1036809 as yet unmatched pairs. 63653 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:32,553,900
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1035593 as yet unmatched pairs. 62405 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,129
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1032765 as yet unmatched pairs. 59541 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:35,741,052
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1028529 as yet unmatched pairs. 55278 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:68,889,082
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1025240 as yet unmatched pairs. 51949 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:83,001,004
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1022812 as yet unmatched pairs. 49483 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:92,242,170
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1021935 as yet unmatched pairs. 48575 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:94,759,979
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1017543 as yet unmatched pairs. 44149 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:101,552,530
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1014439 as yet unmatched pairs. 41019 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr9:111,411,096
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1012229 as yet unmatched pairs. 38766 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:120,439,556
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1009313 as yet unmatched pairs. 35819 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:124,882,546
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1006228 as yet unmatched pairs. 32698 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:127,517,147
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1006907 as yet unmatched pairs. 33356 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:128,309,724
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1001018 as yet unmatched pairs. 27432 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:128,835,623
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 997569 as yet unmatched pairs. 23960 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:130,579,725
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 994785 as yet unmatched pairs. 21163 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:131,512,082
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 991585 as yet unmatched pairs. 17946 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:133,367,398
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 991238 as yet unmatched pairs. 17567 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:136,412,519
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 986553 as yet unmatched pairs. 12842 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:136,862,311
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 982347 as yet unmatched pairs. 8598 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:137,225,593
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 977423 as yet unmatched pairs. 3653 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr10:817,848
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 974100 as yet unmatched pairs. 53430 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:6,215,257
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 971942 as yet unmatched pairs. 51230 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr10:21,756,599
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 968364 as yet unmatched pairs. 47596 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr10:30,845,384
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 966422 as yet unmatched pairs. 45624 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr10:32,929,904
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 968697 as yet unmatched pairs. 47870 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,556
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 964185 as yet unmatched pairs. 43332 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:58,388,682
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 959595 as yet unmatched pairs. 38708 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:68,973,547
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 956997 as yet unmatched pairs. 36077 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:72,338,274
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 953741 as yet unmatched pairs. 32803 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:74,109,147
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 952902 as yet unmatched pairs. 31940 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:79,353,703
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 949577 as yet unmatched pairs. 28564 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:89,003,106
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 946076 as yet unmatched pairs. 25045 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:94,325,047
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 943192 as yet unmatched pairs. 22127 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:97,463,858
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 941930 as yet unmatched pairs. 20845 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:100,983,556
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 938238 as yet unmatched pairs. 17135 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:102,379,386
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 935673 as yet unmatched pairs. 14553 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:104,060,213
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 934538 as yet unmatched pairs. 13390 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:116,951,939
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 930246 as yet unmatched pairs. 9073 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:120,901,094
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 927530 as yet unmatched pairs. 6334 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr10:128,104,025
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 925433 as yet unmatched pairs. 4185 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr11:209,605
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 923411 as yet unmatched pairs. 119690 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:609,053
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 919399 as yet unmatched pairs. 115662 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:893,465
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 917023 as yet unmatched pairs. 113264 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:2,959,827
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 911712 as yet unmatched pairs. 107923 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:6,618,860
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 907427 as yet unmatched pairs. 103615 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:10,752,677
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 904574 as yet unmatched pairs. 100732 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:14,878,126
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 901886 as yet unmatched pairs. 98028 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:19,948,725
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 900768 as yet unmatched pairs. 96894 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:34,089,438
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 898731 as yet unmatched pairs. 94827 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:46,084,155
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 893943 as yet unmatched pairs. 90015 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:47,425,884
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 891588 as yet unmatched pairs. 87639 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr11:57,552,309
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 889526 as yet unmatched pairs. 85554 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:60,902,845
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 889084 as yet unmatched pairs. 85085 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr11:61,964,800
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 889589 as yet unmatched pairs. 85566 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,874
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 882023 as yet unmatched pairs. 77982 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:62,611,286
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 879093 as yet unmatched pairs. 75049 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,881,382
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 885862 as yet unmatched pairs. 81808 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:64,226,802
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 872373 as yet unmatched pairs. 68280 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:64,778,063
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 870948 as yet unmatched pairs. 66850 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:65,183,136
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 867552 as yet unmatched pairs. 63438 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:65,616,317
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 861223 as yet unmatched pairs. 57054 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:65,886,402
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 858478 as yet unmatched pairs. 54290 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,576
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 853883 as yet unmatched pairs. 49680 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:66,688,730
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 850898 as yet unmatched pairs. 46682 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:67,401,138
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 851823 as yet unmatched pairs. 47585 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:68,050,498
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 843616 as yet unmatched pairs. 39358 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:69,643,933
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 852292 as yet unmatched pairs. 48026 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:72,014,181
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 838226 as yet unmatched pairs. 33939 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:74,074,392
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 834072 as yet unmatched pairs. 29764 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:77,624,988
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 832978 as yet unmatched pairs. 28636 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:88,293,832
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 828610 as yet unmatched pairs. 24239 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:102,114,325
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 830107 as yet unmatched pairs. 25707 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:108,514,266
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 823680 as yet unmatched pairs. 19248 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:117,183,763
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 821038 as yet unmatched pairs. 16587 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:118,627,841
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 819780 as yet unmatched pairs. 15310 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:119,090,250
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 816614 as yet unmatched pairs. 12120 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,856
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 819439 as yet unmatched pairs. 14933 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:125,609,446
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 810632 as yet unmatched pairs. 6095 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:130,129,178
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 812651 as yet unmatched pairs. 8090 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 3s. Last read position: chr12:17,347
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 804890 as yet unmatched pairs. 97211 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:4,525,260
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 801883 as yet unmatched pairs. 94172 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:6,536,998
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 808860 as yet unmatched pairs. 101130 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,697
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 801201 as yet unmatched pairs. 93451 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:9,443,559
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 794274 as yet unmatched pairs. 86497 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:14,535,728
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 791186 as yet unmatched pairs. 83378 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:25,209,098
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 788815 as yet unmatched pairs. 80993 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:32,731,412
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 787755 as yet unmatched pairs. 79908 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:47,779,122
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 784442 as yet unmatched pairs. 76571 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:49,044,430
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 781566 as yet unmatched pairs. 73683 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,525
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 786486 as yet unmatched pairs. 78596 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:51,048,919
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 776437 as yet unmatched pairs. 68529 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:52,245,566
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 800460 as yet unmatched pairs. 92537 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:52,517,215
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 773722 as yet unmatched pairs. 65788 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:53,033,907
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 768036 as yet unmatched pairs. 60084 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr12:53,467,261
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 771277 as yet unmatched pairs. 63311 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:54,371,617
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 762643 as yet unmatched pairs. 54639 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:56,158,684
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 764191 as yet unmatched pairs. 56167 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:56,615,343
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 757581 as yet unmatched pairs. 49549 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,276
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 754568 as yet unmatched pairs. 46531 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,526,820
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 751940 as yet unmatched pairs. 43882 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:64,786,005
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 749387 as yet unmatched pairs. 41314 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:70,400,304
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 746817 as yet unmatched pairs. 38720 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:79,047,325
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 744405 as yet unmatched pairs. 36277 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:95,861,169
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 746741 as yet unmatched pairs. 38594 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:103,932,275
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 741747 as yet unmatched pairs. 33578 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:106,851,573
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 736997 as yet unmatched pairs. 28818 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:110,340,724
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 739620 as yet unmatched pairs. 31426 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:112,210,077
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 731598 as yet unmatched pairs. 23383 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:115,966,054
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 729169 as yet unmatched pairs. 20945 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:120,157,880
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 727393 as yet unmatched pairs. 19068 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:120,469,558
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 722620 as yet unmatched pairs. 14273 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr12:122,235,786
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 719697 as yet unmatched pairs. 11332 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr12:123,608,755
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 717604 as yet unmatched pairs. 9217 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:125,134,012
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 714641 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:132,572,302
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 712362 as yet unmatched pairs. 3943 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:20,059,456
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 710360 as yet unmatched pairs. 19692 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr13:27,553,208
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 705727 as yet unmatched pairs. 15043 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:40,941,044
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 703485 as yet unmatched pairs. 12768 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:48,258,223
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 702114 as yet unmatched pairs. 11358 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:75,853,265
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 699421 as yet unmatched pairs. 8640 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:98,829,269
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 695826 as yet unmatched pairs. 5019 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:113,078,684
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 692344 as yet unmatched pairs. 1523 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:21,211,499
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 692394 as yet unmatched pairs. 57552 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:22,926,701
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 687774 as yet unmatched pairs. 52925 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:24,144,194
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 686325 as yet unmatched pairs. 51470 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:31,107,125
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 682237 as yet unmatched pairs. 47362 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:36,519,025
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 679186 as yet unmatched pairs. 44300 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:50,419,953
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 676345 as yet unmatched pairs. 41325 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,041
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 679741 as yet unmatched pairs. 44693 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:60,648,688
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 670876 as yet unmatched pairs. 35810 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:64,521,621
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 668960 as yet unmatched pairs. 33879 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:68,884,833
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 667218 as yet unmatched pairs. 32115 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:73,282,469
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 662823 as yet unmatched pairs. 27675 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,935
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 664875 as yet unmatched pairs. 29703 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:89,984,647
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 657080 as yet unmatched pairs. 21888 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:94,115,916
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 656463 as yet unmatched pairs. 21262 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:101,979,728
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 653483 as yet unmatched pairs. 18273 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:102,081,811
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 655039 as yet unmatched pairs. 19807 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:103,135,253
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 648283 as yet unmatched pairs. 13025 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:104,775,700
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 644338 as yet unmatched pairs. 9048 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,007
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 641105 as yet unmatched pairs. 5809 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:22,577,304
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 635419 as yet unmatched pairs. 48652 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:29,716,678
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 633808 as yet unmatched pairs. 47010 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:34,910,298
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 630528 as yet unmatched pairs. 43720 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:40,856,802
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 628709 as yet unmatched pairs. 41887 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:42,512,973
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 624743 as yet unmatched pairs. 37905 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,374
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 635914 as yet unmatched pairs. 49069 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:48,797,497
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 620029 as yet unmatched pairs. 33172 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:55,192,743
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 619308 as yet unmatched pairs. 32443 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,130
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 620003 as yet unmatched pairs. 33118 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,179
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 618154 as yet unmatched pairs. 31259 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,120
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 619104 as yet unmatched pairs. 32208 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:70,052,465
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 607366 as yet unmatched pairs. 20448 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:73,323,529
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 603636 as yet unmatched pairs. 16708 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:75,210,810
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 601565 as yet unmatched pairs. 14615 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:78,771,516
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 597578 as yet unmatched pairs. 10613 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:84,784,715
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 595708 as yet unmatched pairs. 8726 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:90,068,131
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 592428 as yet unmatched pairs. 5437 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr15:93,020,075
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 589970 as yet unmatched pairs. 2967 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr16:264,051
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 587998 as yet unmatched pairs. 103912 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:686,930
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 582653 as yet unmatched pairs. 98535 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:1,764,396
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 579152 as yet unmatched pairs. 95018 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:2,084,997
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 574986 as yet unmatched pairs. 90832 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,500,415
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 570332 as yet unmatched pairs. 86161 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,029
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 569425 as yet unmatched pairs. 85248 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr16:3,655,893
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 563696 as yet unmatched pairs. 79517 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr16:4,877,025
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 561209 as yet unmatched pairs. 77021 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:11,896,588
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 558043 as yet unmatched pairs. 73833 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:14,951,613
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 555873 as yet unmatched pairs. 71658 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:16,318,024
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 555446 as yet unmatched pairs. 71230 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:18,359,812
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 552984 as yet unmatched pairs. 68768 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:18,868,590
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 550093 as yet unmatched pairs. 65867 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:21,520,026
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 550916 as yet unmatched pairs. 66688 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:22,530,915
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 546558 as yet unmatched pairs. 62308 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:27,226,788
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 545089 as yet unmatched pairs. 60832 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:28,714,382
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 542286 as yet unmatched pairs. 58020 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,590
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 539716 as yet unmatched pairs. 55448 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:29,813,099
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 538550 as yet unmatched pairs. 54278 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:30,081,284
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 536771 as yet unmatched pairs. 52492 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:30,659,513
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 532226 as yet unmatched pairs. 47932 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr16:31,091,174
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 530578 as yet unmatched pairs. 46268 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:46,660,562
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 527101 as yet unmatched pairs. 42762 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:53,879,923
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 524248 as yet unmatched pairs. 39899 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:56,625,799
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 526464 as yet unmatched pairs. 42099 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:58,026,316
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 518723 as yet unmatched pairs. 34348 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:66,884,803
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 515578 as yet unmatched pairs. 31203 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:67,879,065
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 513371 as yet unmatched pairs. 28965 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:69,187,202
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 509003 as yet unmatched pairs. 24591 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:70,331,726
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 506236 as yet unmatched pairs. 21803 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,342
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 503427 as yet unmatched pairs. 18975 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:81,445,529
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 500684 as yet unmatched pairs. 16204 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:85,806,818
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 498193 as yet unmatched pairs. 13704 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,818
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 500043 as yet unmatched pairs. 15547 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:89,282,896
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 489615 as yet unmatched pairs. 5100 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:89,771,775
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 486685 as yet unmatched pairs. 2153 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,193
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 507118 as yet unmatched pairs. 164278 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:1,676,974
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 483972 as yet unmatched pairs. 141127 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:3,663,719
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 480265 as yet unmatched pairs. 137410 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:4,939,148
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 474401 as yet unmatched pairs. 131537 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,732
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 473444 as yet unmatched pairs. 130565 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,323,047
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 468933 as yet unmatched pairs. 126047 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:7,595,870
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 466694 as yet unmatched pairs. 123802 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:8,379,836
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 472901 as yet unmatched pairs. 130000 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,586
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 460521 as yet unmatched pairs. 117612 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:17,817,019
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 459416 as yet unmatched pairs. 116502 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:19,380,692
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 453936 as yet unmatched pairs. 111017 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:28,619,903
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 451417 as yet unmatched pairs. 108496 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:29,087,095
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 448127 as yet unmatched pairs. 105201 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:31,200,467
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 445113 as yet unmatched pairs. 102184 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:35,264,238
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 442563 as yet unmatched pairs. 99627 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:36,435,267
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 439870 as yet unmatched pairs. 96933 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:38,257,015
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 438709 as yet unmatched pairs. 95765 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,201,217
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 449638 as yet unmatched pairs. 106678 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr17:39,723,442
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 439767 as yet unmatched pairs. 96801 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:40,398,579
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 430674 as yet unmatched pairs. 87701 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 122s. Last read position: chr17:41,583,270
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 427801 as yet unmatched pairs. 84818 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:41,855,068
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 422418 as yet unmatched pairs. 79425 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:42,562,906
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 420183 as yet unmatched pairs. 77184 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:43,228,404
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 416353 as yet unmatched pairs. 73325 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:44,397,541
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 413825 as yet unmatched pairs. 70790 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:46,031,575
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 412375 as yet unmatched pairs. 69320 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:47,680,058
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 411733 as yet unmatched pairs. 68674 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:49,817,904
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 406099 as yet unmatched pairs. 63030 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,656,792
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 403351 as yet unmatched pairs. 60265 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr17:56,904,331
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 400726 as yet unmatched pairs. 57638 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:59,644,332
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 404819 as yet unmatched pairs. 61704 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,624
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 402345 as yet unmatched pairs. 59225 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:63,421,507
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 392623 as yet unmatched pairs. 49491 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:64,545,740
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 389945 as yet unmatched pairs. 46809 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:68,043,919
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 389703 as yet unmatched pairs. 46561 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:74,847,446
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 383796 as yet unmatched pairs. 40649 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:75,570,489
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 382114 as yet unmatched pairs. 38957 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:75,756,519
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 383130 as yet unmatched pairs. 39973 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:76,083,482
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 374384 as yet unmatched pairs. 31221 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:77,488,831
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 373923 as yet unmatched pairs. 30745 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:78,993,705
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 367326 as yet unmatched pairs. 24137 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,955
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 365241 as yet unmatched pairs. 22034 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,927
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 373739 as yet unmatched pairs. 30528 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:81,704,272
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 358288 as yet unmatched pairs. 15069 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:81,932,834
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 354229 as yet unmatched pairs. 11002 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr17:82,084,327
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 355868 as yet unmatched pairs. 12625 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:82,238,810
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 350501 as yet unmatched pairs. 7242 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:2,688,443
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 342959 as yet unmatched pairs. 18643 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr18:12,370,885
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 340270 as yet unmatched pairs. 15953 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr18:23,872,994
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 338107 as yet unmatched pairs. 13770 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr18:32,123,516
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 334776 as yet unmatched pairs. 10424 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr18:47,075,284
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 331976 as yet unmatched pairs. 7620 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr18:57,611,651
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 331424 as yet unmatched pairs. 7063 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr18:74,253,520
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 328728 as yet unmatched pairs. 4351 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr19:580,401
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 331549 as yet unmatched pairs. 168841 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:871,928
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 320523 as yet unmatched pairs. 157811 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:1,105,763
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 324252 as yet unmatched pairs. 161538 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr19:1,399,875
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 312753 as yet unmatched pairs. 150031 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:1,615,397
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 309809 as yet unmatched pairs. 147079 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr19:2,121,264
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 307660 as yet unmatched pairs. 144920 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr19:2,438,211
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 303102 as yet unmatched pairs. 140356 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:3,577,919
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 297244 as yet unmatched pairs. 134486 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:4,494,258
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 293361 as yet unmatched pairs. 130587 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:5,244,153
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 291870 as yet unmatched pairs. 129089 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:6,380,239
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 287602 as yet unmatched pairs. 124817 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:7,553,865
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 284442 as yet unmatched pairs. 121653 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:8,485,924
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 291014 as yet unmatched pairs. 128221 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:8,958,430
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 278758 as yet unmatched pairs. 115956 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:10,155,020
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 275566 as yet unmatched pairs. 112761 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:10,683,517
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 275446 as yet unmatched pairs. 112633 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr19:11,214,342
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 268420 as yet unmatched pairs. 105594 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:12,734,348
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 271222 as yet unmatched pairs. 108392 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:13,112,901
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 263115 as yet unmatched pairs. 100270 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr19:14,402,658
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 258682 as yet unmatched pairs. 95830 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,445
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 257377 as yet unmatched pairs. 94523 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:16,523,203
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 252454 as yet unmatched pairs. 89599 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:17,807,789
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 247681 as yet unmatched pairs. 84825 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:18,532,125
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 246700 as yet unmatched pairs. 83835 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:19,337,173
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 240672 as yet unmatched pairs. 77805 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr19:33,379,251
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 238935 as yet unmatched pairs. 76065 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:35,266,708
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 238544 as yet unmatched pairs. 75668 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:36,103,786
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 231357 as yet unmatched pairs. 68471 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:38,632,614
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 230543 as yet unmatched pairs. 67649 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:39,178,539
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 225260 as yet unmatched pairs. 62362 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:39,971,205
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 224232 as yet unmatched pairs. 61333 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr19:40,800,796
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 220418 as yet unmatched pairs. 57513 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,306
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 218488 as yet unmatched pairs. 55579 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:42,286,872
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 215499 as yet unmatched pairs. 52583 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:44,060,461
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 208585 as yet unmatched pairs. 45667 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr19:45,396,633
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 205292 as yet unmatched pairs. 42373 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:46,384,884
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 202629 as yet unmatched pairs. 39707 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:47,353,140
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 198737 as yet unmatched pairs. 35813 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr19:48,616,130
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 208888 as yet unmatched pairs. 45964 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:49,138,352
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 191595 as yet unmatched pairs. 28669 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr19:49,601,823
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 188788 as yet unmatched pairs. 25856 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:49,873,056
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 187431 as yet unmatched pairs. 24496 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:50,979,796
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 181496 as yet unmatched pairs. 18551 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:54,149,746
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 180007 as yet unmatched pairs. 17062 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:55,132,914
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 176596 as yet unmatched pairs. 13650 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:55,455,087
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 172382 as yet unmatched pairs. 9436 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:57,492,937
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 166983 as yet unmatched pairs. 4023 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,596
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 173297 as yet unmatched pairs. 10331 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr20:2,461,683
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 162314 as yet unmatched pairs. 47021 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:3,803,434
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 158429 as yet unmatched pairs. 43130 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:17,607,066
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 156249 as yet unmatched pairs. 40950 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:24,973,645
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 151583 as yet unmatched pairs. 36283 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:32,210,099
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 148704 as yet unmatched pairs. 33402 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:34,742,224
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 145271 as yet unmatched pairs. 29969 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:35,704,491
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 143612 as yet unmatched pairs. 28288 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:38,138,123
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 139547 as yet unmatched pairs. 24220 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:44,500,248
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 137557 as yet unmatched pairs. 22229 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:46,065,048
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 134147 as yet unmatched pairs. 18815 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr20:50,129,639
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 133615 as yet unmatched pairs. 18282 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,762
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 138253 as yet unmatched pairs. 22911 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr20:62,311,729
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 125328 as yet unmatched pairs. 9981 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr20:62,880,442
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 121478 as yet unmatched pairs. 6131 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr20:63,738,650
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 117686 as yet unmatched pairs. 2335 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,989
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 114511 as yet unmatched pairs. 18169 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,946
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 113362 as yet unmatched pairs. 17017 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:26,111,981
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 120167 as yet unmatched pairs. 23819 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr21:33,550,380
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 111235 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr21:37,478,238
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 105191 as yet unmatched pairs. 8831 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr21:43,690,337
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 103122 as yet unmatched pairs. 6762 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,044
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 98656 as yet unmatched pairs. 2293 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chr22:18,170,904
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 95176 as yet unmatched pairs. 44947 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:20,711,411
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 91916 as yet unmatched pairs. 41679 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:23,314,046
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 91473 as yet unmatched pairs. 41229 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:26,492,258
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 85364 as yet unmatched pairs. 35119 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:29,308,284
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 82455 as yet unmatched pairs. 32209 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr22:31,091,431
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 79426 as yet unmatched pairs. 29180 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,742
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 78856 as yet unmatched pairs. 28610 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:37,614,240
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 73911 as yet unmatched pairs. 23662 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr22:38,488,003
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 71584 as yet unmatched pairs. 21333 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr22:40,346,540
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 66865 as yet unmatched pairs. 16611 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:41,636,684
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 66437 as yet unmatched pairs. 16183 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:42,834,301
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 60648 as yet unmatched pairs. 10394 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:49,794,125
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 57542 as yet unmatched pairs. 7287 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:50,448,544
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 55031 as yet unmatched pairs. 4762 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:2,740,844
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 50240 as yet unmatched pairs. 44642 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:21,869,664
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 46602 as yet unmatched pairs. 41002 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:40,692,210
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 44026 as yet unmatched pairs. 38426 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chrX:47,210,026
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 46398 as yet unmatched pairs. 40798 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:49,031,430
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 39081 as yet unmatched pairs. 33481 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chrX:53,538,835
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 36134 as yet unmatched pairs. 30533 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chrX:64,919,052
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 32681 as yet unmatched pairs. 27078 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:71,555,368
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 31600 as yet unmatched pairs. 25997 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:78,113,858
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 32406 as yet unmatched pairs. 26803 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:108,595,513
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 25270 as yet unmatched pairs. 19667 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:123,624,110
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 23865 as yet unmatched pairs. 18262 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,416
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 25549 as yet unmatched pairs. 19946 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chrX:153,787,066
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 18064 as yet unmatched pairs. 12461 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chrX:154,349,708
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 21203 as yet unmatched pairs. 15600 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,752
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 17434 as yet unmatched pairs. 11828 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chrX:154,471,178
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 7799 as yet unmatched pairs. 2193 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,142
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 4927 as yet unmatched pairs. 622 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: KI270711.1:18,234
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 4345 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,680
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 30 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 626078341 records. 0 pairs never matched.
INFO 2026-06-08 08:59:09 MarkDuplicates After buildSortedReadEndLists freeMemory: 204144256; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:59:09 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:59:14 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:59:14 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:00:26 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:00:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:01:36 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:01:48 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792714400; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 09:01:48 MarkDuplicates Marking 262935096 records as duplicates.
INFO 2026-06-08 09:01:48 MarkDuplicates Found 51829056 optical duplicate clusters.
INFO 2026-06-08 09:01:48 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:02:04 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,892,914
INFO 2026-06-08 09:02:22 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:44,645,240
INFO 2026-06-08 09:02:39 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:116,944,931
INFO 2026-06-08 09:02:55 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:154,965,640
INFO 2026-06-08 09:03:12 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 16s. Last read position: chr1:186,337,013
INFO 2026-06-08 09:03:29 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:41s. Time for last 10,000,000: 16s. Last read position: chr1:244,055,159
INFO 2026-06-08 09:03:46 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:58s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:04:02 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:14s. Time for last 10,000,000: 16s. Last read position: chr2:86,210,525
INFO 2026-06-08 09:04:19 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 16s. Last read position: chr2:177,219,595
INFO 2026-06-08 09:04:36 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 17s. Last read position: chr2:240,130,828
INFO 2026-06-08 09:04:54 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 17s. Last read position: chr3:49,100,262
INFO 2026-06-08 09:05:11 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 17s. Last read position: chr3:128,060,162
INFO 2026-06-08 09:05:27 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr3:195,778,912
INFO 2026-06-08 09:05:44 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:55s. Time for last 10,000,000: 16s. Last read position: chr4:47,451,538
INFO 2026-06-08 09:06:00 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 16s. Last read position: chr4:186,707,844
INFO 2026-06-08 09:06:17 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 16s. Last read position: chr5:87,379,821
INFO 2026-06-08 09:06:34 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:45s. Time for last 10,000,000: 16s. Last read position: chr5:150,402,563
INFO 2026-06-08 09:06:50 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 16s. Last read position: chr5:181,238,100
INFO 2026-06-08 09:07:06 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 15s. Last read position: chr6:31,779,281
INFO 2026-06-08 09:07:22 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 16s. Last read position: chr6:75,666,924
INFO 2026-06-08 09:07:38 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 16s. Last read position: chr6:167,911,380
INFO 2026-06-08 09:07:54 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:06s. Time for last 10,000,000: 16s. Last read position: chr7:48,101,815
INFO 2026-06-08 09:08:10 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:22s. Time for last 10,000,000: 15s. Last read position: chr7:100,094,198
INFO 2026-06-08 09:08:26 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 16s. Last read position: chr7:129,858,930
INFO 2026-06-08 09:08:42 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 16s. Last read position: chr8:30,727,647
INFO 2026-06-08 09:08:59 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 16s. Last read position: chr8:108,203,486
INFO 2026-06-08 09:09:15 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 15s. Last read position: chr8:143,935,013
INFO 2026-06-08 09:09:31 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 16s. Last read position: chr9:92,242,170
INFO 2026-06-08 09:09:47 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 16s. Last read position: chr9:131,512,082
INFO 2026-06-08 09:10:04 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 16s. Last read position: chr10:46,010,556
INFO 2026-06-08 09:10:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 16s. Last read position: chr10:102,379,386
INFO 2026-06-08 09:10:36 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 16s. Last read position: chr11:10,752,677
INFO 2026-06-08 09:10:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 16s. Last read position: chr11:62,611,286
INFO 2026-06-08 09:11:08 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:20s. Time for last 10,000,000: 16s. Last read position: chr11:68,050,498
INFO 2026-06-08 09:11:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 15s. Last read position: chr11:119,090,250
INFO 2026-06-08 09:11:40 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 15s. Last read position: chr12:25,209,098
INFO 2026-06-08 09:11:56 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 15s. Last read position: chr12:54,371,617
INFO 2026-06-08 09:12:12 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 15s. Last read position: chr12:106,851,573
INFO 2026-06-08 09:12:28 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 15s. Last read position: chr13:20,059,456
INFO 2026-06-08 09:12:43 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 15s. Last read position: chr14:31,107,125
INFO 2026-06-08 09:12:59 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:11s. Time for last 10,000,000: 15s. Last read position: chr14:94,115,916
INFO 2026-06-08 09:13:15 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 15s. Last read position: chr15:42,512,973
INFO 2026-06-08 09:13:31 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 15s. Last read position: chr15:78,771,516
INFO 2026-06-08 09:13:47 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr16:3,655,893
INFO 2026-06-08 09:14:03 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 15s. Last read position: chr16:28,714,382
INFO 2026-06-08 09:14:19 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 15s. Last read position: chr16:66,884,803
INFO 2026-06-08 09:14:35 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:47s. Time for last 10,000,000: 15s. Last read position: chr17:1,361,193
INFO 2026-06-08 09:14:50 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 15s. Last read position: chr17:19,380,692
INFO 2026-06-08 09:15:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 15s. Last read position: chr17:41,583,270
INFO 2026-06-08 09:15:22 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 15s. Last read position: chr17:59,644,332
INFO 2026-06-08 09:15:37 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 15s. Last read position: chr17:78,993,705
INFO 2026-06-08 09:15:53 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 15s. Last read position: chr18:32,123,516
INFO 2026-06-08 09:16:09 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 16s. Last read position: chr19:2,438,211
INFO 2026-06-08 09:16:25 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 16s. Last read position: chr19:11,214,342
INFO 2026-06-08 09:16:42 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 16s. Last read position: chr19:35,266,708
INFO 2026-06-08 09:16:58 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 15s. Last read position: chr19:46,384,884
INFO 2026-06-08 09:17:13 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 15s. Last read position: chr19:57,492,937
INFO 2026-06-08 09:17:29 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 16s. Last read position: chr20:44,500,248
INFO 2026-06-08 09:17:45 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 15s. Last read position: chr21:33,550,380
INFO 2026-06-08 09:18:01 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 15s. Last read position: chr22:36,285,742
INFO 2026-06-08 09:18:17 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 15s. Last read position: chrX:40,692,210
INFO 2026-06-08 09:18:33 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:44s. Time for last 10,000,000: 16s. Last read position: chrX:153,787,066
INFO 2026-06-08 09:18:48 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:18:48 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:18:48 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:18:48 MarkDuplicates Before output close freeMemory: 201987000; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:18:48 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:18:48 MarkDuplicates After output close freeMemory: 104190600; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:18:48 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.19 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory