Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/d24f908a50d67e4d1a2077da80bbca/tih_rna_sample_00581_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/e9d8028c80b01a78057a1352308241/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/e9d8028c80b01a78057a1352308241/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/a3db6d7b373701d4c7adfd92bb28a6/tih_rna_sample_00581_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NFE2L1--CDK5RAP3
starfusion
arriba
AC136431.1--PKD1P5
starfusion
ZNF124--CSRP1
starfusion
arriba
ITPR1--SETMAR
starfusion
arriba
TLK2P1--AC110079.1
starfusion
SCYL1--AP000769.4
arriba
SCYL1--AP000769.1
arriba
TVP23C--CDRT4
arriba
STAG1--AL023754.1
arriba
RRP1B--HSF2BP
arriba
ITCH--RUSC2
arriba
STAG1--AL023754.2
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing NFE2L1--CDK5RAP3:   0%|          | 0/12 [00:00<?, ?it/s]
Processing NFE2L1--CDK5RAP3:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]
Processing AC136431.1--PKD1P5:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]
Processing AC136431.1--PKD1P5:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing ZNF124--CSRP1:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]     
Processing ZNF124--CSRP1:  25%|██▌       | 3/12 [00:00<00:00,  9.54it/s]
Processing ITPR1--SETMAR:  25%|██▌       | 3/12 [00:00<00:00,  9.54it/s]
Processing ITPR1--SETMAR:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]
Processing TLK2P1--AC110079.1:  42%|████▏     | 5/12 [00:00<00:00,  9.60it/s]
Processing SCYL1--AP000769.4:  42%|████▏     | 5/12 [00:00<00:00,  9.60it/s] 
Processing SCYL1--AP000769.4:  50%|█████     | 6/12 [00:00<00:00,  9.61it/s]
Processing SCYL1--AP000769.1:  50%|█████     | 6/12 [00:00<00:00,  9.61it/s]
Processing SCYL1--AP000769.1:  58%|█████▊    | 7/12 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 7/12 [00:00<00:00,  9.62it/s]    
Processing TVP23C--CDRT4:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s]
Processing STAG1--AL023754.1:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s]
Processing STAG1--AL023754.1:  75%|███████▌  | 9/12 [00:00<00:00,  9.63it/s]
Processing RRP1B--HSF2BP:  75%|███████▌  | 9/12 [00:00<00:00,  9.63it/s]    
Processing RRP1B--HSF2BP:  83%|████████▎ | 10/12 [00:01<00:00,  9.64it/s]
Processing ITCH--RUSC2:  83%|████████▎ | 10/12 [00:01<00:00,  9.64it/s]  
Processing ITCH--RUSC2:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]
Processing STAG1--AL023754.2:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]
Processing STAG1--AL023754.2: 100%|██████████| 12/12 [00:01<00:00,  9.64it/s]
Processing STAG1--AL023754.2: 100%|██████████| 12/12 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory