Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/8c6df9a8821dba3bf7564c59f9cea8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/8c6df9a8821dba3bf7564c59f9cea8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/97aae6c4ac77c4bdf6f9180de0c8d5/tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/b4dbc69e53e388a11fbdb3e8c95a30/tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1