Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/edc90179d880f4dd82b77f5a60bdee/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/dbce374c62c9e1a70a6dfe47a892da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/dbce374c62c9e1a70a6dfe47a892da/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3a629bdeef588d9d7d8be6eacf91b0/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 139409375
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	139409375
Known Splicing Events:	137759631
Partial Novel Splicing Events:	963933
Novel Splicing Events:	620088
Filtered Splicing Events:	65723

Total splicing  Junctions:	286712
Known Splicing Junctions:	206636
Partial Novel Splicing Junctions:	52375
Novel Splicing Junctions:	27701

===================================================================
Create BED file ...
Create Interact file ...