Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/2a279fd5a9f98a64f6bcfce17d0c60/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/2a279fd5a9f98a64f6bcfce17d0c60/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0e131d051e1c2aec66758007368190/tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/0eaac37a0c5a44ae4c844ffe4e352c/tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 288983387
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	288983387
Known Splicing Events:	286464683
Partial Novel Splicing Events:	1664333
Novel Splicing Events:	756088
Filtered Splicing Events:	98283

Total splicing  Junctions:	506175
Known Splicing Junctions:	266349
Partial Novel Splicing Junctions:	142864
Novel Splicing Junctions:	96962

===================================================================
Create BED file ...
Create Interact file ...