File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/62209c32bee968cec2deea5919f273/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00599_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/62209c32bee968cec2deea5919f273/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/0db812b4930a2ff0552f60936bec40/tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/62209c32bee968cec2deea5919f273/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/3eea96f2119946dc75e6181a511bc1/tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 259760330
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	259760330
Known Splicing Events:	257047307
Partial Novel Splicing Events:	1540789
Novel Splicing Events:	1033465
Filtered Splicing Events:	138769

Total splicing  Junctions:	487375
Known Splicing Junctions:	256617
Partial Novel Splicing Junctions:	120667
Novel Splicing Junctions:	110091

===================================================================
Create BED file ...
Create Interact file ...