Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/af89c25e4f6a188a0098fa76ebee42/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/0f71a0c154cf351fb20ae48f0bca50/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/06c2d4721a1880f0c93d310501f4f9/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3 Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/af89c25e4f6a188a0098fa76ebee42/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/56f3ba5098a26e57a4657ff13fdc3b/tih_rna_sample_00582_B23MVV7LT4_1.FusionInspector.fusions.tsv ==> STAGING COMPLETE (8 inputs) Loading annotation Read 3041209 records Warning in parseGtfAttribute("exon_number", exons) : Failed to parse 'exon_number' attribute of 8 record(s). Loading protein domains Read 134356 records Drawing fusion #1: RABL6:DAPK1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #2: TLK2P1:AC110079.1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #3: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #4: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #5: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #6: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #7: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #8: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #9: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #10: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #11: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #12: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #13: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #14: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #15: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #16: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #17: TLK2:AC240565.1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #18: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #19: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #20: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #21: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #22: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #23: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #24: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #25: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #26: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #27: EFL1:GOLGA6L11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #28: SUSD1:CORO2A [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #29: KLRC4:KLRK1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Done