File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/7aaff889b509718724682a75fd589c/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 11 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 325
  Pass (FILTER=PASS): 41 (12.6%)
  Fail (FILTER=FAIL): 284 (87.4%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 11
  All 11 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 81
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 41
  confidence_below_min(low<high): 22
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 22
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 17
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 12
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
  total_reads_below_min(5.0<8.0): 2

Breakdown by confidence:
  high: 41 pass, 4 fail (total: 45)
  low: 0 pass, 139 fail (total: 139)
  medium: 0 pass, 141 fail (total: 141)
Arriba filter: 325 rows -> 41 PASS; wrote tih_rna_sample_00764_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00764_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00764_B23MVV7LT4_1.arriba.fusions.filter_summary.txt