File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/d2757dbcc5c2750043fbc21aa0e0c4/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:50:00
                             Started mapping on |	Jun 08 09:56:34
                                    Finished on |	Jun 08 10:46:33
       Mapping speed, Million of reads per hour |	295.64

                          Number of input reads |	246286588
                      Average input read length |	254
                                    UNIQUE READS:
                   Uniquely mapped reads number |	237321434
                        Uniquely mapped reads % |	96.36%
                          Average mapped length |	254.08
                       Number of splices: Total |	261359712
            Number of splices: Annotated (sjdb) |	257450736
                       Number of splices: GT/AG |	257994113
                       Number of splices: GC/AG |	1997092
                       Number of splices: AT/AC |	243421
               Number of splices: Non-canonical |	1125086
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6182781
             % of reads mapped to multiple loci |	2.51%
        Number of reads mapped to too many loci |	273998
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2273585
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	234790
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%