Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/344fc3a1fcd6cf048c9036a1352190/tih_rna_sample_00680_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/7b0fa16cfcf95a0cd0819e8725ccfa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/7b0fa16cfcf95a0cd0819e8725ccfa/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory