Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d0af62adcf3708d8f27235d1b1fb37/tih_rna_sample_00598_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/9842716f2b03b3ef57a79c29d25e97/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/9842716f2b03b3ef57a79c29d25e97/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/4ddf15cd938156f0b383719b3fd795/tih_rna_sample_00598_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PPP1R12A--SYT1
starfusion
arriba
RUNDC1--ADGRD1
starfusion
arriba
ARHGEF7--CCDC122
starfusion
arriba
PIAS2--RIT2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
NEDD4L--HSPA13
starfusion
arriba
JMJD1C--FRMD4A
starfusion
arriba
UNC5C--UNC5C
arriba
TVP23C--CDRT4
arriba
ARHGEF7--LACC1
arriba
BMPR1B--UNC5C
arriba
STX16--NPEPL1
arriba
C1QTNF3--AMACR
arriba
KLRC4--KLRK1
arriba
GPC1--LINC01937
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing PPP1R12A--SYT1:   0%|          | 0/15 [00:00<?, ?it/s]
Processing PPP1R12A--SYT1:   7%|▋         | 1/15 [00:00<00:01,  9.20it/s]
Processing RUNDC1--ADGRD1:   7%|▋         | 1/15 [00:00<00:01,  9.20it/s]
Processing RUNDC1--ADGRD1:  13%|█▎        | 2/15 [00:00<00:01,  9.45it/s]
Processing ARHGEF7--CCDC122:  13%|█▎        | 2/15 [00:00<00:01,  9.45it/s]
Processing ARHGEF7--CCDC122:  20%|██        | 3/15 [00:00<00:01,  9.53it/s]
Processing PIAS2--RIT2:  20%|██        | 3/15 [00:00<00:01,  9.53it/s]     
Processing PIAS2--RIT2:  27%|██▋       | 4/15 [00:00<00:01,  9.57it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 4/15 [00:00<00:01,  9.57it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 5/15 [00:00<00:01,  9.60it/s]
Processing NEDD4L--HSPA13:  33%|███▎      | 5/15 [00:00<00:01,  9.60it/s]    
Processing NEDD4L--HSPA13:  40%|████      | 6/15 [00:00<00:00,  9.61it/s]
Processing JMJD1C--FRMD4A:  40%|████      | 6/15 [00:00<00:00,  9.61it/s]
Processing JMJD1C--FRMD4A:  47%|████▋     | 7/15 [00:00<00:00,  9.62it/s]
Processing UNC5C--UNC5C:  47%|████▋     | 7/15 [00:00<00:00,  9.62it/s]  
Processing UNC5C--UNC5C:  53%|█████▎    | 8/15 [00:00<00:00,  9.55it/s]
Processing TVP23C--CDRT4:  53%|█████▎    | 8/15 [00:00<00:00,  9.55it/s]
Processing TVP23C--CDRT4:  60%|██████    | 9/15 [00:00<00:00,  9.58it/s]
Processing ARHGEF7--LACC1:  60%|██████    | 9/15 [00:00<00:00,  9.58it/s]
Processing ARHGEF7--LACC1:  67%|██████▋   | 10/15 [00:01<00:00,  9.60it/s]
Processing BMPR1B--UNC5C:  67%|██████▋   | 10/15 [00:01<00:00,  9.60it/s] 
Processing BMPR1B--UNC5C:  73%|███████▎  | 11/15 [00:01<00:00,  9.61it/s]
Processing STX16--NPEPL1:  73%|███████▎  | 11/15 [00:01<00:00,  9.61it/s]
Processing STX16--NPEPL1:  80%|████████  | 12/15 [00:01<00:00,  9.62it/s]
Processing C1QTNF3--AMACR:  80%|████████  | 12/15 [00:01<00:00,  9.62it/s]
Processing C1QTNF3--AMACR:  87%|████████▋ | 13/15 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  87%|████████▋ | 13/15 [00:01<00:00,  9.63it/s]  
Processing KLRC4--KLRK1:  93%|█████████▎| 14/15 [00:01<00:00,  9.63it/s]
Processing GPC1--LINC01937:  93%|█████████▎| 14/15 [00:01<00:00,  9.63it/s]
Processing GPC1--LINC01937: 100%|██████████| 15/15 [00:01<00:00,  9.63it/s]
Processing GPC1--LINC01937: 100%|██████████| 15/15 [00:01<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory