Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/c98eba84c70d6134b31a28101c40b3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/d3c4889fac8bddf20c6ee2cee3691b/tih_rna_sample_00572_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/c98eba84c70d6134b31a28101c40b3/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 219817146
unpaired = 3959431
MERGED PAIRED END READS = 219817146
MATES PROCESSED = 443593723
TOTAL READS     = 223776577
DISTINCT READS  = 1.01679e+08
DISTINCT COUNTS = 903
MAX COUNT       = 876150
COUNTS OF 1     = 5.15638e+07
MAX TERMS       = 100
OBSERVED COUNTS (876151)
1	51563841
2	24348820
3	11832025
4	5935314
5	3107617
6	1710162
7	991943
8	606881
9	388600
10	261365
11	181140
12	131661
13	97520
14	75069
15	58907
16	47100
17	38317
18	31747
19	26487
20	22257
21	19172
22	16728
23	14523
24	12887
25	11209
26	10025
27	9189
28	8201
29	7412
30	6457
31	6011
32	5489
33	5035
34	4636
35	4211
36	3883
37	3703
38	3334
39	3211
40	2843
41	2765
42	2575
43	2352
44	2275
45	2078
46	1929
47	1900
48	1760
49	1612
50	1608
51	1462
52	1334
53	1358
54	1270
55	1132
56	1122
57	1048
58	1052
59	972
60	945
61	891
62	849
63	801
64	814
65	719
66	719
67	672
68	651
69	648
70	596
71	601
72	543
73	593
74	554
75	521
76	486
77	482
78	433
79	460
80	453
81	417
82	415
83	405
84	338
85	379
86	341
87	341
88	338
89	330
90	328
91	283
92	273
93	274
94	304
95	267
96	243
97	235
98	241
99	235
100	243
101	240
102	217
103	201
104	198
105	207
106	170
107	220
108	194
109	171
110	181
111	175
112	196
113	148
114	163
115	172
116	149
117	156
118	141
119	161
120	138
121	158
122	152
123	138
124	131
125	137
126	128
127	118
128	133
129	117
130	119
131	113
132	95
133	107
134	78
135	92
136	86
137	95
138	108
139	96
140	87
141	90
142	98
143	83
144	85
145	70
146	73
147	78
148	99
149	75
150	88
151	64
152	85
153	63
154	69
155	71
156	66
157	58
158	70
159	66
160	74
161	68
162	58
163	55
164	63
165	54
166	54
167	49
168	60
169	66
170	61
171	45
172	44
173	52
174	60
175	50
176	38
177	49
178	40
179	42
180	45
181	55
182	49
183	38
184	35
185	42
186	43
187	38
188	34
189	40
190	35
191	44
192	32
193	32
194	46
195	33
196	37
197	27
198	35
199	30
200	34
201	31
202	28
203	24
204	30
205	32
206	36
207	30
208	31
209	37
210	30
211	27
212	36
213	34
214	31
215	23
216	32
217	25
218	29
219	26
220	25
221	32
222	24
223	22
224	25
225	28
226	25
227	21
228	25
229	28
230	22
231	36
232	21
233	29
234	24
235	19
236	14
237	22
238	14
239	20
240	15
241	12
242	19
243	21
244	9
245	19
246	15
247	22
248	27
249	12
250	21
251	27
252	15
253	13
254	12
255	15
256	19
257	22
258	19
259	10
260	6
261	17
262	12
263	17
264	17
265	14
266	29
267	14
268	18
269	17
270	7
271	17
272	16
273	13
274	15
275	19
276	16
277	18
278	8
279	12
280	15
281	22
282	15
283	9
284	14
285	15
286	9
287	4
288	10
289	9
290	13
291	10
292	13
293	10
294	7
295	9
296	9
297	15
298	5
299	17
300	5
301	12
302	11
303	10
304	12
305	9
306	15
307	17
308	11
309	4
310	13
311	3
312	8
313	14
314	7
315	9
316	6
317	8
318	12
319	13
320	9
321	7
322	6
323	6
324	7
325	5
326	3
327	6
328	3
329	6
330	7
331	13
332	6
333	6
334	9
335	9
336	5
337	9
338	6
339	9
340	8
341	3
342	9
343	8
344	9
345	13
346	5
347	7
348	6
349	5
350	2
351	6
352	3
353	11
354	2
355	9
356	7
357	7
358	3
359	8
360	9
361	3
362	6
363	7
364	3
365	6
366	6
367	3
368	4
369	6
370	2
371	3
372	8
373	3
374	4
375	3
376	5
377	4
378	4
379	3
380	7
381	4
382	8
383	6
384	4
385	8
386	3
387	3
388	3
389	4
390	8
391	5
392	5
393	3
394	6
395	6
396	5
397	10
398	2
399	7
400	8
401	3
402	4
403	4
404	2
405	4
406	8
407	8
408	2
409	4
410	3
411	5
412	4
413	3
414	3
415	6
416	2
417	8
418	5
419	1
420	4
421	4
422	3
423	9
424	5
425	5
426	4
427	2
428	5
429	3
430	4
431	1
432	5
433	4
434	5
435	6
436	1
437	3
438	5
439	5
440	5
441	5
442	3
443	1
444	3
445	5
446	2
447	6
448	4
449	2
450	3
451	3
453	4
454	2
455	4
456	1
457	10
458	6
459	6
460	3
461	5
462	3
463	4
464	1
465	3
466	2
467	6
468	3
469	3
470	5
471	4
472	4
473	3
474	3
475	4
478	1
481	4
482	3
483	3
484	1
485	2
486	5
487	1
488	2
489	1
492	3
493	2
494	5
495	2
496	3
497	3
498	3
500	1
501	1
502	2
503	3
505	1
506	3
507	1
508	2
509	3
510	3
511	1
512	2
513	4
515	4
516	1
517	5
518	2
519	2
520	4
521	2
522	3
523	1
524	1
525	4
526	3
527	3
528	3
529	1
530	3
531	1
532	5
533	2
534	1
535	2
536	1
537	3
539	3
541	2
542	2
543	2
544	2
545	3
546	5
547	1
548	2
551	1
552	1
553	1
554	2
555	5
556	3
557	4
558	5
559	3
560	2
562	2
564	4
566	1
567	1
568	1
569	3
570	1
572	1
573	3
574	4
575	2
576	4
578	4
579	2
580	1
581	1
583	3
584	1
585	2
586	1
588	3
589	1
590	2
591	1
592	2
593	1
594	3
595	1
598	2
599	1
600	3
601	2
602	2
603	2
604	1
605	1
607	2
608	1
610	1
611	2
612	1
615	1
616	1
617	2
619	2
621	1
622	2
623	2
624	2
626	4
629	1
630	1
631	3
632	1
634	2
635	1
636	1
637	2
638	1
639	3
641	1
642	1
643	1
644	3
646	1
647	1
650	2
651	1
653	3
655	1
656	1
657	1
659	1
660	1
666	1
668	1
669	4
670	1
671	2
674	2
675	1
676	1
677	1
678	2
679	1
680	1
682	1
683	1
684	1
685	1
687	1
688	3
690	1
693	1
694	2
697	2
698	3
699	1
700	6
701	2
702	1
703	1
704	3
706	1
708	1
713	1
714	1
715	2
717	1
719	1
724	1
725	1
727	1
729	2
730	1
731	2
735	1
738	1
741	1
745	2
747	1
749	3
753	1
756	1
759	3
760	1
763	2
765	1
767	3
772	1
773	1
780	2
781	1
782	1
784	1
786	1
789	1
790	1
793	1
795	2
796	1
797	1
802	1
806	1
807	2
809	2
811	1
813	1
815	1
817	1
823	1
824	1
825	2
828	1
830	2
831	1
834	1
835	1
842	1
843	1
845	1
846	1
852	1
855	3
860	2
864	1
866	2
867	1
870	1
874	1
876	1
877	1
878	1
880	1
887	1
888	1
889	2
891	1
900	1
902	1
903	1
904	1
923	2
932	1
933	1
936	1
946	1
953	1
957	1
965	1
969	2
972	1
978	1
981	1
982	1
983	2
987	1
989	1
999	1
1006	1
1007	1
1013	1
1014	1
1020	1
1022	1
1028	1
1036	1
1050	2
1056	2
1057	1
1060	1
1068	1
1072	1
1081	1
1093	2
1100	1
1102	1
1106	1
1109	1
1111	1
1117	1
1121	1
1126	1
1127	1
1131	1
1136	1
1137	1
1142	1
1144	1
1150	1
1155	1
1159	1
1168	1
1170	1
1175	1
1176	1
1184	2
1186	1
1194	1
1197	1
1212	1
1217	1
1221	1
1238	1
1241	1
1260	1
1269	1
1275	1
1276	1
1277	1
1280	1
1286	1
1296	1
1300	1
1302	1
1308	1
1315	1
1323	1
1329	1
1335	1
1341	1
1346	1
1353	1
1355	1
1364	2
1368	1
1396	1
1404	1
1409	1
1424	1
1429	1
1435	1
1438	1
1441	1
1448	1
1464	1
1465	1
1467	1
1473	1
1484	1
1488	1
1495	1
1502	1
1506	1
1507	1
1508	1
1513	1
1516	1
1535	1
1549	1
1553	1
1560	1
1566	1
1567	1
1569	1
1579	1
1581	1
1592	1
1599	1
1628	1
1652	1
1673	1
1684	1
1688	1
1703	1
1709	1
1744	1
1753	1
1779	1
1794	1
1807	1
1808	1
1835	2
1905	1
1906	1
1912	1
1936	2
1997	1
2002	1
2007	1
2010	1
2017	1
2018	1
2037	1
2044	1
2066	1
2107	1
2121	1
2152	1
2184	1
2254	1
2260	1
2311	1
2373	1
2396	1
2403	1
2473	1
2501	1
2523	1
2572	1
2610	1
2666	1
2735	1
2785	1
2839	1
2976	1
3009	1
3280	1
3310	1
3418	1
3874	1
4562	1
5451	1
6713	1
14501	1
17544	1
876150	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._............_.._..................................._.._............
._..._...._...._.._................._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]