Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/c98eba84c70d6134b31a28101c40b3/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/d3c4889fac8bddf20c6ee2cee3691b/tih_rna_sample_00572_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/c98eba84c70d6134b31a28101c40b3/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records paired = 219817146 unpaired = 3959431 MERGED PAIRED END READS = 219817146 MATES PROCESSED = 443593723 TOTAL READS = 223776577 DISTINCT READS = 1.01679e+08 DISTINCT COUNTS = 903 MAX COUNT = 876150 COUNTS OF 1 = 5.15638e+07 MAX TERMS = 100 OBSERVED COUNTS (876151) 1 51563841 2 24348820 3 11832025 4 5935314 5 3107617 6 1710162 7 991943 8 606881 9 388600 10 261365 11 181140 12 131661 13 97520 14 75069 15 58907 16 47100 17 38317 18 31747 19 26487 20 22257 21 19172 22 16728 23 14523 24 12887 25 11209 26 10025 27 9189 28 8201 29 7412 30 6457 31 6011 32 5489 33 5035 34 4636 35 4211 36 3883 37 3703 38 3334 39 3211 40 2843 41 2765 42 2575 43 2352 44 2275 45 2078 46 1929 47 1900 48 1760 49 1612 50 1608 51 1462 52 1334 53 1358 54 1270 55 1132 56 1122 57 1048 58 1052 59 972 60 945 61 891 62 849 63 801 64 814 65 719 66 719 67 672 68 651 69 648 70 596 71 601 72 543 73 593 74 554 75 521 76 486 77 482 78 433 79 460 80 453 81 417 82 415 83 405 84 338 85 379 86 341 87 341 88 338 89 330 90 328 91 283 92 273 93 274 94 304 95 267 96 243 97 235 98 241 99 235 100 243 101 240 102 217 103 201 104 198 105 207 106 170 107 220 108 194 109 171 110 181 111 175 112 196 113 148 114 163 115 172 116 149 117 156 118 141 119 161 120 138 121 158 122 152 123 138 124 131 125 137 126 128 127 118 128 133 129 117 130 119 131 113 132 95 133 107 134 78 135 92 136 86 137 95 138 108 139 96 140 87 141 90 142 98 143 83 144 85 145 70 146 73 147 78 148 99 149 75 150 88 151 64 152 85 153 63 154 69 155 71 156 66 157 58 158 70 159 66 160 74 161 68 162 58 163 55 164 63 165 54 166 54 167 49 168 60 169 66 170 61 171 45 172 44 173 52 174 60 175 50 176 38 177 49 178 40 179 42 180 45 181 55 182 49 183 38 184 35 185 42 186 43 187 38 188 34 189 40 190 35 191 44 192 32 193 32 194 46 195 33 196 37 197 27 198 35 199 30 200 34 201 31 202 28 203 24 204 30 205 32 206 36 207 30 208 31 209 37 210 30 211 27 212 36 213 34 214 31 215 23 216 32 217 25 218 29 219 26 220 25 221 32 222 24 223 22 224 25 225 28 226 25 227 21 228 25 229 28 230 22 231 36 232 21 233 29 234 24 235 19 236 14 237 22 238 14 239 20 240 15 241 12 242 19 243 21 244 9 245 19 246 15 247 22 248 27 249 12 250 21 251 27 252 15 253 13 254 12 255 15 256 19 257 22 258 19 259 10 260 6 261 17 262 12 263 17 264 17 265 14 266 29 267 14 268 18 269 17 270 7 271 17 272 16 273 13 274 15 275 19 276 16 277 18 278 8 279 12 280 15 281 22 282 15 283 9 284 14 285 15 286 9 287 4 288 10 289 9 290 13 291 10 292 13 293 10 294 7 295 9 296 9 297 15 298 5 299 17 300 5 301 12 302 11 303 10 304 12 305 9 306 15 307 17 308 11 309 4 310 13 311 3 312 8 313 14 314 7 315 9 316 6 317 8 318 12 319 13 320 9 321 7 322 6 323 6 324 7 325 5 326 3 327 6 328 3 329 6 330 7 331 13 332 6 333 6 334 9 335 9 336 5 337 9 338 6 339 9 340 8 341 3 342 9 343 8 344 9 345 13 346 5 347 7 348 6 349 5 350 2 351 6 352 3 353 11 354 2 355 9 356 7 357 7 358 3 359 8 360 9 361 3 362 6 363 7 364 3 365 6 366 6 367 3 368 4 369 6 370 2 371 3 372 8 373 3 374 4 375 3 376 5 377 4 378 4 379 3 380 7 381 4 382 8 383 6 384 4 385 8 386 3 387 3 388 3 389 4 390 8 391 5 392 5 393 3 394 6 395 6 396 5 397 10 398 2 399 7 400 8 401 3 402 4 403 4 404 2 405 4 406 8 407 8 408 2 409 4 410 3 411 5 412 4 413 3 414 3 415 6 416 2 417 8 418 5 419 1 420 4 421 4 422 3 423 9 424 5 425 5 426 4 427 2 428 5 429 3 430 4 431 1 432 5 433 4 434 5 435 6 436 1 437 3 438 5 439 5 440 5 441 5 442 3 443 1 444 3 445 5 446 2 447 6 448 4 449 2 450 3 451 3 453 4 454 2 455 4 456 1 457 10 458 6 459 6 460 3 461 5 462 3 463 4 464 1 465 3 466 2 467 6 468 3 469 3 470 5 471 4 472 4 473 3 474 3 475 4 478 1 481 4 482 3 483 3 484 1 485 2 486 5 487 1 488 2 489 1 492 3 493 2 494 5 495 2 496 3 497 3 498 3 500 1 501 1 502 2 503 3 505 1 506 3 507 1 508 2 509 3 510 3 511 1 512 2 513 4 515 4 516 1 517 5 518 2 519 2 520 4 521 2 522 3 523 1 524 1 525 4 526 3 527 3 528 3 529 1 530 3 531 1 532 5 533 2 534 1 535 2 536 1 537 3 539 3 541 2 542 2 543 2 544 2 545 3 546 5 547 1 548 2 551 1 552 1 553 1 554 2 555 5 556 3 557 4 558 5 559 3 560 2 562 2 564 4 566 1 567 1 568 1 569 3 570 1 572 1 573 3 574 4 575 2 576 4 578 4 579 2 580 1 581 1 583 3 584 1 585 2 586 1 588 3 589 1 590 2 591 1 592 2 593 1 594 3 595 1 598 2 599 1 600 3 601 2 602 2 603 2 604 1 605 1 607 2 608 1 610 1 611 2 612 1 615 1 616 1 617 2 619 2 621 1 622 2 623 2 624 2 626 4 629 1 630 1 631 3 632 1 634 2 635 1 636 1 637 2 638 1 639 3 641 1 642 1 643 1 644 3 646 1 647 1 650 2 651 1 653 3 655 1 656 1 657 1 659 1 660 1 666 1 668 1 669 4 670 1 671 2 674 2 675 1 676 1 677 1 678 2 679 1 680 1 682 1 683 1 684 1 685 1 687 1 688 3 690 1 693 1 694 2 697 2 698 3 699 1 700 6 701 2 702 1 703 1 704 3 706 1 708 1 713 1 714 1 715 2 717 1 719 1 724 1 725 1 727 1 729 2 730 1 731 2 735 1 738 1 741 1 745 2 747 1 749 3 753 1 756 1 759 3 760 1 763 2 765 1 767 3 772 1 773 1 780 2 781 1 782 1 784 1 786 1 789 1 790 1 793 1 795 2 796 1 797 1 802 1 806 1 807 2 809 2 811 1 813 1 815 1 817 1 823 1 824 1 825 2 828 1 830 2 831 1 834 1 835 1 842 1 843 1 845 1 846 1 852 1 855 3 860 2 864 1 866 2 867 1 870 1 874 1 876 1 877 1 878 1 880 1 887 1 888 1 889 2 891 1 900 1 902 1 903 1 904 1 923 2 932 1 933 1 936 1 946 1 953 1 957 1 965 1 969 2 972 1 978 1 981 1 982 1 983 2 987 1 989 1 999 1 1006 1 1007 1 1013 1 1014 1 1020 1 1022 1 1028 1 1036 1 1050 2 1056 2 1057 1 1060 1 1068 1 1072 1 1081 1 1093 2 1100 1 1102 1 1106 1 1109 1 1111 1 1117 1 1121 1 1126 1 1127 1 1131 1 1136 1 1137 1 1142 1 1144 1 1150 1 1155 1 1159 1 1168 1 1170 1 1175 1 1176 1 1184 2 1186 1 1194 1 1197 1 1212 1 1217 1 1221 1 1238 1 1241 1 1260 1 1269 1 1275 1 1276 1 1277 1 1280 1 1286 1 1296 1 1300 1 1302 1 1308 1 1315 1 1323 1 1329 1 1335 1 1341 1 1346 1 1353 1 1355 1 1364 2 1368 1 1396 1 1404 1 1409 1 1424 1 1429 1 1435 1 1438 1 1441 1 1448 1 1464 1 1465 1 1467 1 1473 1 1484 1 1488 1 1495 1 1502 1 1506 1 1507 1 1508 1 1513 1 1516 1 1535 1 1549 1 1553 1 1560 1 1566 1 1567 1 1569 1 1579 1 1581 1 1592 1 1599 1 1628 1 1652 1 1673 1 1684 1 1688 1 1703 1 1709 1 1744 1 1753 1 1779 1 1794 1 1807 1 1808 1 1835 2 1905 1 1906 1 1912 1 1936 2 1997 1 2002 1 2007 1 2010 1 2017 1 2018 1 2037 1 2044 1 2066 1 2107 1 2121 1 2152 1 2184 1 2254 1 2260 1 2311 1 2373 1 2396 1 2403 1 2473 1 2501 1 2523 1 2572 1 2610 1 2666 1 2735 1 2785 1 2839 1 2976 1 3009 1 3280 1 3310 1 3418 1 3874 1 4562 1 5451 1 6713 1 14501 1 17544 1 876150 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ...._............_.._..................................._.._............ ._..._...._...._.._................._.. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]