Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/f7934d7e91b541e331ea75c1887455/tih_rna_sample_00624_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/a7f3b3a7c1308f8fbbc8c2e46d2a00/tih_rna_sample_00624_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/90e41cc945a2199bf401e9fb63ca43/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/90e41cc945a2199bf401e9fb63ca43/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory