Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/4180c47a93835431d059aed33cc9dc/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/85079f43b4564751631583024116e1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/85079f43b4564751631583024116e1/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 292328673
unpaired = 5537324
MERGED PAIRED END READS = 292328673
MATES PROCESSED = 590194670
TOTAL READS     = 297865997
DISTINCT READS  = 1.11847e+08
DISTINCT COUNTS = 746
MAX COUNT       = 1207781
COUNTS OF 1     = 4.60846e+07
MAX TERMS       = 100
OBSERVED COUNTS (1207782)
1	46084589
2	26430706
3	15407843
4	8995995
5	5305437
6	3196511
7	1978972
8	1259872
9	825543
10	559765
11	389546
12	279114
13	204617
14	153889
15	117985
16	92157
17	74401
18	59604
19	48952
20	41008
21	34388
22	29714
23	25104
24	22141
25	19080
26	16753
27	14970
28	12967
29	11769
30	10770
31	9375
32	8526
33	7669
34	7138
35	6541
36	5947
37	5396
38	5005
39	4715
40	4142
41	3936
42	3651
43	3392
44	3164
45	2981
46	2792
47	2500
48	2376
49	2280
50	2208
51	1978
52	1844
53	1860
54	1658
55	1518
56	1515
57	1538
58	1340
59	1239
60	1219
61	1118
62	1079
63	1038
64	970
65	975
66	881
67	870
68	783
69	739
70	737
71	723
72	684
73	663
74	632
75	611
76	567
77	539
78	539
79	528
80	527
81	471
82	463
83	409
84	412
85	409
86	393
87	353
88	367
89	396
90	388
91	359
92	314
93	313
94	269
95	284
96	266
97	287
98	281
99	238
100	260
101	239
102	227
103	204
104	190
105	203
106	172
107	187
108	183
109	196
110	185
111	170
112	157
113	155
114	170
115	167
116	162
117	143
118	174
119	162
120	133
121	130
122	123
123	138
124	134
125	127
126	128
127	117
128	108
129	96
130	113
131	97
132	98
133	98
134	98
135	94
136	85
137	102
138	66
139	102
140	94
141	100
142	75
143	80
144	75
145	71
146	76
147	84
148	74
149	74
150	74
151	61
152	61
153	71
154	58
155	65
156	72
157	50
158	56
159	58
160	59
161	59
162	54
163	54
164	49
165	45
166	51
167	58
168	37
169	53
170	48
171	42
172	54
173	48
174	41
175	45
176	48
177	40
178	34
179	36
180	45
181	41
182	46
183	31
184	35
185	34
186	27
187	32
188	32
189	41
190	48
191	28
192	31
193	36
194	32
195	34
196	37
197	31
198	25
199	22
200	26
201	23
202	24
203	29
204	27
205	32
206	21
207	26
208	38
209	26
210	28
211	27
212	21
213	21
214	23
215	20
216	19
217	18
218	16
219	20
220	20
221	15
222	17
223	20
224	17
225	22
226	17
227	11
228	17
229	14
230	17
231	23
232	15
233	16
234	13
235	21
236	11
237	12
238	13
239	9
240	13
241	12
242	16
243	18
244	18
245	13
246	17
247	14
248	13
249	14
250	10
251	9
252	13
253	18
254	12
255	9
256	13
257	11
258	13
259	5
260	16
261	10
262	18
263	12
264	13
265	10
266	8
267	10
268	11
269	11
270	6
271	9
272	13
273	9
274	5
275	4
276	10
277	16
278	9
279	12
280	9
281	5
282	4
283	15
284	14
285	12
286	4
287	16
288	9
289	7
290	8
291	9
292	9
293	9
294	3
295	7
296	7
297	6
298	7
299	6
300	11
301	12
302	7
303	5
304	10
305	6
306	8
307	5
308	11
309	8
310	3
311	6
312	8
313	4
314	5
315	7
316	6
317	4
318	10
319	4
320	4
321	4
322	5
323	3
324	4
325	4
326	5
327	9
328	4
329	4
330	2
332	4
333	4
334	3
335	5
336	6
337	7
338	7
339	2
340	6
341	8
342	2
343	2
344	6
345	4
346	1
347	1
348	5
349	4
350	4
351	1
352	4
353	6
354	5
355	2
356	3
357	5
358	3
359	2
360	3
361	4
362	3
363	5
364	4
365	7
366	1
367	3
368	2
369	2
370	2
371	3
372	2
373	3
374	4
375	2
376	3
377	1
378	7
379	3
380	4
381	2
382	2
383	2
384	2
385	5
387	4
388	1
389	3
390	2
391	5
392	5
394	3
395	2
396	8
397	5
398	2
399	2
400	3
401	1
403	1
404	2
405	2
406	5
407	2
408	2
409	5
410	3
411	1
412	5
413	2
414	2
415	2
416	3
417	2
418	4
419	3
420	2
421	3
422	1
423	6
424	1
425	3
426	1
427	1
428	4
430	2
431	2
432	1
433	1
434	2
435	1
436	1
437	2
438	1
439	2
440	2
441	1
443	2
444	2
445	1
446	3
447	1
448	1
451	1
452	2
453	5
454	2
456	1
457	2
458	2
459	1
460	3
462	2
463	2
465	2
467	4
468	1
469	3
470	2
471	3
472	2
473	2
474	1
475	2
476	3
478	2
479	2
480	2
481	2
482	1
483	1
484	1
485	1
486	1
487	3
488	1
489	1
490	1
493	1
494	4
495	4
496	1
497	1
498	1
499	2
500	2
501	1
502	1
503	4
504	2
506	1
507	1
512	1
513	1
514	1
515	1
516	1
517	2
519	1
520	2
522	4
524	1
526	1
527	1
529	2
530	1
532	1
533	2
538	3
540	2
543	1
544	1
547	2
548	1
549	1
550	2
551	1
552	3
555	1
558	1
559	1
560	1
561	1
562	1
564	1
565	1
566	2
567	1
568	1
572	2
575	1
580	1
585	1
586	1
589	1
590	2
592	1
593	2
598	1
599	2
601	1
604	1
605	1
606	1
610	1
616	2
618	1
619	1
621	1
622	2
623	1
629	2
631	1
635	2
639	1
648	1
650	1
652	2
654	1
657	1
658	1
662	2
664	1
665	1
667	3
676	1
680	1
681	1
683	1
684	1
687	1
691	1
693	1
698	1
699	1
702	1
717	2
721	2
723	1
727	1
728	1
729	1
731	2
739	1
740	1
744	1
746	1
750	1
758	1
761	1
763	2
767	1
768	1
776	1
785	1
786	1
795	1
798	1
801	1
803	1
805	1
806	1
808	1
819	2
821	1
829	1
834	1
837	1
838	1
840	1
848	1
851	1
865	1
869	1
870	2
871	1
876	1
878	1
881	1
882	1
893	1
914	1
915	1
920	1
922	1
929	1
933	1
941	1
953	1
967	1
970	1
981	1
983	1
985	1
995	2
996	1
1000	1
1012	1
1018	1
1028	1
1029	1
1043	1
1072	1
1086	1
1096	1
1111	1
1113	1
1116	1
1131	1
1135	1
1157	1
1170	1
1175	1
1183	1
1203	1
1230	1
1233	1
1239	1
1251	1
1271	1
1272	1
1275	1
1292	1
1383	1
1387	1
1457	1
1672	1
1685	1
1702	1
1724	1
1759	1
1760	1
1763	1
1804	1
1807	1
1810	1
1822	1
1860	1
1863	1
1870	1
1886	1
1891	1
1894	1
1900	1
1909	1
1926	1
1941	1
1946	1
1961	1
1964	1
1968	2
1987	1
2004	1
2044	1
2098	1
2113	1
2135	1
2138	1
2145	1
2158	1
2186	1
2188	1
2193	1
2222	1
2240	1
2248	1
2252	1
2274	1
2278	1
2281	1
2313	1
2324	1
2346	1
2348	1
2352	1
2367	1
2383	1
2389	1
2450	1
2512	1
2536	1
2553	1
2759	1
2777	1
2794	1
2837	1
2854	1
2856	1
2887	1
2904	1
3017	1
3077	1
3095	1
3188	1
3475	1
3480	1
3621	1
3933	1
4075	1
4452	1
4921	1
6947	1
7886	1
9484	1
10074	1
27615	1
1207781	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._............................................................_.......
..............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]