File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/fd8a2a47a0b2627a994e00bbc060cd/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:05:14
                             Started mapping on |	Jun 08 10:11:37
                                    Finished on |	Jun 08 10:58:33
       Mapping speed, Million of reads per hour |	340.71

                          Number of input reads |	266509325
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	256791777
                        Uniquely mapped reads % |	96.35%
                          Average mapped length |	258.29
                       Number of splices: Total |	302945525
            Number of splices: Annotated (sjdb) |	298740311
                       Number of splices: GT/AG |	298936600
                       Number of splices: GC/AG |	2389577
                       Number of splices: AT/AC |	251463
               Number of splices: Non-canonical |	1367885
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.13
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.64
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6051072
             % of reads mapped to multiple loci |	2.27%
        Number of reads mapped to too many loci |	533393
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2425723
                 % of reads unmapped: too short |	0.91%
                Number of reads unmapped: other |	707360
                     % of reads unmapped: other |	0.27%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%