File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/2ecfba6e0a08d7a25761bacb555b4d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:50:32
                             Started mapping on |	Jun 08 08:56:47
                                    Finished on |	Jun 08 09:24:01
       Mapping speed, Million of reads per hour |	288.21

                          Number of input reads |	130817580
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	125176736
                        Uniquely mapped reads % |	95.69%
                          Average mapped length |	249.71
                       Number of splices: Total |	112851274
            Number of splices: Annotated (sjdb) |	110308632
                       Number of splices: GT/AG |	111235371
                       Number of splices: GC/AG |	811960
                       Number of splices: AT/AC |	68276
               Number of splices: Non-canonical |	735667
                      Mismatch rate per base, % |	0.40%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	3676354
             % of reads mapped to multiple loci |	2.81%
        Number of reads mapped to too many loci |	309004
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1439112
                 % of reads unmapped: too short |	1.10%
                Number of reads unmapped: other |	216374
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%