Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/89938d078103a88601fa8c6bff5145/tih_rna_sample_00586_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/c7b030d8a666baf588be18a6149f0b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/c7b030d8a666baf588be18a6149f0b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory