File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/053858bf6f4cfc8f59547f10bbfeac/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00596_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/053858bf6f4cfc8f59547f10bbfeac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/053858bf6f4cfc8f59547f10bbfeac/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/4180c47a93835431d059aed33cc9dc/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/d352a80c2b869749f08decd2043de4/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 319612793
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	319612793
Known Splicing Events:	314997037
Partial Novel Splicing Events:	2024817
Novel Splicing Events:	2456781
Filtered Splicing Events:	134158

Total splicing  Junctions:	569759
Known Splicing Junctions:	285636
Partial Novel Splicing Junctions:	165157
Novel Splicing Junctions:	118966

===================================================================
Create BED file ...
Create Interact file ...