File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/9101786210d3791719fa47a15d4b1d/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 179
  Pass (FILTER=PASS): 6 (3.4%)
  Fail (FILTER=FAIL): 173 (96.6%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 6
  All 6 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 63
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 19
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 17
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 9
  confidence_below_min(low<high): 9
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 8
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 8
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
  aih_curated_blacklist: 1
  total_reads_below_min(3.0<8.0): 1

Breakdown by confidence:
  high: 6 pass, 2 fail (total: 8)
  low: 0 pass, 55 fail (total: 55)
  medium: 0 pass, 116 fail (total: 116)
Arriba filter: 179 rows -> 6 PASS; wrote tih_rna_sample_00660_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00660_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00660_B23MVV7LT4_1.arriba.fusions.filter_summary.txt