File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/3e8b864b55a8710d5970c15b92bc8b/.command.log
Size
10.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00570_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/3e8b864b55a8710d5970c15b92bc8b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/33dc146957b23c3cee2cd8f5cb2919/tih_rna_sample_00570_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/559ad856793568f20a9c5737494c7f/tih_rna_sample_00570_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/3e8b864b55a8710d5970c15b92bc8b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/48 [00:00<?, ?it/s]FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
DPAGT1--PGR
starfusion
arriba
TLK2--AC240565.1
starfusion
AP3M1--PPP3CB
starfusion
arriba
EVI5--DNAI4
starfusion
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGA9
arriba
AC092807.3--DDAH1
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
OTUD4--HERC5
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
CEPT1--ZNF43
arriba
CEPT1--ZNF208
arriba

Processing FSIP1--AC013652.1:   0%|          | 0/48 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   2%|▏         | 1/48 [00:00<00:05,  9.21it/s]
Processing TLK2P1--AC110079.1:   2%|▏         | 1/48 [00:00<00:05,  9.21it/s]
Processing TLK2P1--AC110079.1:   4%|▍         | 2/48 [00:00<00:04,  9.46it/s]
Processing DPAGT1--PGR:   4%|▍         | 2/48 [00:00<00:04,  9.46it/s]       
Processing DPAGT1--PGR:   6%|▋         | 3/48 [00:00<00:04,  9.54it/s]
Processing TLK2--AC240565.1:   6%|▋         | 3/48 [00:00<00:04,  9.54it/s]
Processing TLK2--AC240565.1:   8%|▊         | 4/48 [00:00<00:04,  9.58it/s]
Processing AP3M1--PPP3CB:   8%|▊         | 4/48 [00:00<00:04,  9.58it/s]   
Processing AP3M1--PPP3CB:  10%|█         | 5/48 [00:00<00:04,  9.60it/s]
Processing EVI5--DNAI4:  10%|█         | 5/48 [00:00<00:04,  9.60it/s]  
Processing EVI5--DNAI4:  12%|█▎        | 6/48 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA8:  12%|█▎        | 6/48 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA8:  15%|█▍        | 7/48 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  15%|█▍        | 7/48 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  17%|█▋        | 8/48 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  17%|█▋        | 8/48 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  19%|█▉        | 9/48 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  19%|█▉        | 9/48 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  21%|██        | 10/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA10:  21%|██        | 10/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA10:  23%|██▎       | 11/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  23%|██▎       | 11/48 [00:01<00:03,  9.63it/s] 
Processing PCDHGB2--PCDHGB7:  25%|██▌       | 12/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  25%|██▌       | 12/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  27%|██▋       | 13/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  27%|██▋       | 13/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  29%|██▉       | 14/48 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  29%|██▉       | 14/48 [00:01<00:03,  9.64it/s] 
Processing PCDHGB2--PCDHGC3:  31%|███▏      | 15/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  31%|███▏      | 15/48 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  33%|███▎      | 16/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  33%|███▎      | 16/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  35%|███▌      | 17/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  35%|███▌      | 17/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  38%|███▊      | 18/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  38%|███▊      | 18/48 [00:01<00:03,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  40%|███▉      | 19/48 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  40%|███▉      | 19/48 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  42%|████▏     | 20/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  42%|████▏     | 20/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  44%|████▍     | 21/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  44%|████▍     | 21/48 [00:02<00:02,  9.64it/s] 
Processing PCDHGA5--PCDHGB7:  46%|████▌     | 22/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  46%|████▌     | 22/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  48%|████▊     | 23/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  48%|████▊     | 23/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  50%|█████     | 24/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGC3:  50%|█████     | 24/48 [00:02<00:02,  9.64it/s] 
Processing PCDHGA5--PCDHGC3:  52%|█████▏    | 25/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  52%|█████▏    | 25/48 [00:02<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  54%|█████▍    | 26/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGA8:  54%|█████▍    | 26/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGA8:  56%|█████▋    | 27/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGC4:  56%|█████▋    | 27/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGC4:  58%|█████▊    | 28/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGC5:  58%|█████▊    | 28/48 [00:02<00:02,  9.63it/s]
Processing PCDHGA4--PCDHGC5:  60%|██████    | 29/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGB6:  60%|██████    | 29/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGB6:  62%|██████▎   | 30/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA10:  62%|██████▎   | 30/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA10:  65%|██████▍   | 31/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGB7:  65%|██████▍   | 31/48 [00:03<00:01,  9.63it/s] 
Processing PCDHGA4--PCDHGB7:  67%|██████▋   | 32/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA12:  67%|██████▋   | 32/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA12:  69%|██████▉   | 33/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA11:  69%|██████▉   | 33/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA11:  71%|███████   | 34/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGC3:  71%|███████   | 34/48 [00:03<00:01,  9.63it/s] 
Processing PCDHGA4--PCDHGC3:  73%|███████▎  | 35/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA9:  73%|███████▎  | 35/48 [00:03<00:01,  9.63it/s]
Processing PCDHGA4--PCDHGA9:  75%|███████▌  | 36/48 [00:03<00:01,  9.63it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 36/48 [00:03<00:01,  9.63it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 37/48 [00:03<00:01,  9.63it/s]
Processing STX16--NPEPL1:  77%|███████▋  | 37/48 [00:03<00:01,  9.63it/s]    
Processing STX16--NPEPL1:  79%|███████▉  | 38/48 [00:03<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  79%|███████▉  | 38/48 [00:03<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  81%|████████▏ | 39/48 [00:04<00:00,  9.64it/s]
Processing OTUD4--HERC5:  81%|████████▏ | 39/48 [00:04<00:00,  9.64it/s] 
Processing OTUD4--HERC5:  83%|████████▎ | 40/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHA13:  83%|████████▎ | 40/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHA13:  85%|████████▌ | 41/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHAC1:  85%|████████▌ | 41/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHAC1:  88%|████████▊ | 42/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHAC2:  88%|████████▊ | 42/48 [00:04<00:00,  9.62it/s]
Processing PCDHA6--PCDHAC2:  90%|████████▉ | 43/48 [00:04<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC1:  90%|████████▉ | 43/48 [00:04<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC1:  92%|█████████▏| 44/48 [00:04<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  92%|█████████▏| 44/48 [00:04<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  94%|█████████▍| 45/48 [00:04<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  94%|█████████▍| 45/48 [00:04<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  96%|█████████▌| 46/48 [00:04<00:00,  9.63it/s]
Processing CEPT1--ZNF43:  96%|█████████▌| 46/48 [00:04<00:00,  9.63it/s]   
Processing CEPT1--ZNF43:  98%|█████████▊| 47/48 [00:04<00:00,  9.63it/s]
Processing CEPT1--ZNF208:  98%|█████████▊| 47/48 [00:04<00:00,  9.63it/s]
Processing CEPT1--ZNF208: 100%|██████████| 48/48 [00:04<00:00,  9.63it/s]
Processing CEPT1--ZNF208: 100%|██████████| 48/48 [00:04<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory